Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / rabix/benten issues and pull requests

#125 - What are the supported versions of CWL?

Issue - State: open - Opened by miguel76 9 months ago

#124 - Finish rename

Pull Request - State: closed - Opened by mr-c 10 months ago

#123 - Visualization not working on VScode:WSL

Issue - State: open - Opened by martinherrerias 11 months ago

#122 - CWLPreview not working with vscode

Issue - State: open - Opened by tranqsi over 1 year ago - 1 comment

#121 - This PR fixes an URI issue with the webview component

Pull Request - State: closed - Opened by nilshoffmann over 1 year ago

#120 - Bump minimatch from 3.0.4 to 3.1.2 in /vscode-client

Pull Request - State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#118 - Would be great to be able to export the CWL preview image from vscode

Issue - State: open - Opened by green555 about 2 years ago - 1 comment

#116 - Bump minimist from 1.2.5 to 1.2.6 in /vscode-client

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#115 - Add doc for IntelliJ

Pull Request - State: closed - Opened by kinow almost 3 years ago - 2 comments

#114 - learning mode: popups to explain CWL constructs

Issue - State: open - Opened by mr-c almost 3 years ago

#113 - Bump lodash from 4.17.20 to 4.17.21 in /vscode-client

Pull Request - State: open - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#108 - In server packaging get rid of zip stage

Issue - State: open - Opened by ghost over 3 years ago

#107 - Open VSX Listing: Signing the Publisher Agreement

Issue - State: closed - Opened by spoenemann over 3 years ago - 1 comment

#104 - benten trouble with windows network mounts

Issue - State: open - Opened by tetron almost 4 years ago - 1 comment
Labels: bug

#101 - Documentation on hover does not work on VS Code since release 2020.9.15

Issue - State: closed - Opened by ghost almost 4 years ago
Labels: bug

#100 - $include in InitialWorkDirRequirement flagged incorrectly as error

Issue - State: closed - Opened by pvanheus about 4 years ago - 1 comment
Labels: bug

#99 - Add CWL 1.2 release JSON to language definitions and remove the dev versions

Issue - State: closed - Opened by ghost about 4 years ago
Labels: enhancement

#98 - Fill out `listing` field for Directory in sample data generator

Issue - State: open - Opened by ghost about 4 years ago
Labels: enhancement, advanced cwl

#97 - Show command line preview of all tools in a workflow.

Issue - State: open - Opened by ghost about 4 years ago
Labels: enhancement

#96 - Check when field expression to ensure it returns a boolean.

Issue - State: open - Opened by ghost about 4 years ago
Labels: enhancement

#94 - Publish vscode extension in Open VSX registry

Issue - State: closed - Opened by stain about 4 years ago - 2 comments

#93 - User types defined inline (inside the CWL) are not parsed properly

Issue - State: open - Opened by ghost over 4 years ago
Labels: bug, advanced cwl

#91 - Indistinguishable text when previewing CWL under a dark color theme

Issue - State: closed - Opened by nanxstats over 4 years ago - 1 comment
Labels: bug

#90 - Bug in regexp for parsing expressions

Issue - State: open - Opened by ghost over 4 years ago
Labels: bug

#89 - Fix user type hover preview

Issue - State: closed - Opened by ghost over 4 years ago
Labels: bug, annoyance, advanced cwl

#88 - Fix auto-completion for types

Issue - State: open - Opened by ghost over 4 years ago
Labels: bug, advanced cwl

#87 - Validate imported types

Issue - State: open - Opened by ghost over 4 years ago
Labels: enhancement, advanced cwl

#86 - Hovering over a field should display CWL doc + child fields

Issue - State: closed - Opened by ghost over 4 years ago
Labels: enhancement, documentation

#85 - Installing Rabix Benten using pipx 0.15.0.0+ doesn't work

Issue - State: closed - Opened by vemonet over 4 years ago - 3 comments
Labels: documentation

#84 - Can we roll code/schemadef into cwl/linkedschemadeftype?

Issue - State: closed - Opened by ghost over 4 years ago - 1 comment
Labels: internals, refactor

#83 - Initial key completions for requirements expressed as dict do not work

Issue - State: closed - Opened by ghost over 4 years ago
Labels: bug

#82 - Properly handle imported type urls

Issue - State: closed - Opened by ghost over 4 years ago
Labels: bug

#81 - Correctly parse SchemaDef type file as a list

Issue - State: closed - Opened by ghost over 4 years ago
Labels: bug

#80 - Need to be smarter about identifying SchemaDef-d types

Issue - State: closed - Opened by ghost over 4 years ago
Labels: bug

#79 - $include and $import should incorporate error checking

Issue - State: closed - Opened by ghost over 4 years ago
Labels: enhancement

#78 - $include should trigger file browser

Issue - State: closed - Opened by ghost over 4 years ago
Labels: enhancement, advanced cwl

#77 - Why is `Dirent.required_fields` empty?

Issue - State: closed - Opened by ghost over 4 years ago - 1 comment
Labels: bug

#76 - Why is dirent not inferred?

Issue - State: closed - Opened by ghost over 4 years ago
Labels: bug

#75 - Handle $import in hints

Issue - State: closed - Opened by ghost over 4 years ago - 1 comment
Labels: bug

#74 - No stdout / stderr for CommandOutputParameter type

Issue - State: closed - Opened by illusional almost 5 years ago - 2 comments

#73 - Steps with same id should flag problem in workflow

Issue - State: open - Opened by ghost almost 5 years ago
Labels: enhancement

#72 - scatter should parse values for validity

Issue - State: open - Opened by ghost almost 5 years ago
Labels: enhancement, advanced cwl

#70 - Expand acceptable ports for a step to include variables used in expressions

Issue - State: closed - Opened by ghost almost 5 years ago
Labels: bug, advanced cwl

#69 - JS evaluation: allow evaluation of parts of expressions, like variables

Issue - State: open - Opened by ghost almost 5 years ago
Labels: enhancement, icing, advanced cwl

#68 - docs: add note about installing using pipx but from a venv

Issue - State: closed - Opened by ghost almost 5 years ago - 1 comment
Labels: documentation

#67 - auto-completion of edam file types

Issue - State: open - Opened by ghost almost 5 years ago - 4 comments
Labels: enhancement, advanced cwl

#66 - file type linting via edam ontology

Issue - State: open - Opened by ghost almost 5 years ago
Labels: enhancement, advanced cwl

#65 - Fanin/Fan out jump to definition

Issue - State: open - Opened by ghost almost 5 years ago
Labels: enhancement, icing

#64 - Enable parsing of steps from remote files

Issue - State: closed - Opened by ghost almost 5 years ago - 1 comment
Labels: bug

#63 - Hovering over "CommandLineTool" should show preview of command line

Issue - State: open - Opened by ghost almost 5 years ago
Labels: enhancement, icing

#62 - Fix number of lines reported for multiline string.

Issue - State: open - Opened by ghost almost 5 years ago
Labels: bug

#61 - Add warning for unconnected inputs/outputs/ports

Issue - State: closed - Opened by ghost about 5 years ago
Labels: enhancement

#60 - JS evaluation: handle `valueFrom` in `in` field of `step`

Issue - State: closed - Opened by ghost about 5 years ago - 1 comment
Labels: bug

#59 - JS Evaluation: handle multiple parameter references in one field

Issue - State: closed - Opened by ghost about 5 years ago
Labels: bug

#58 - remove `stdout`, stdin` bug fix when official schema is fixed

Issue - State: closed - Opened by ghost about 5 years ago - 1 comment
Labels: internals, refactor

#57 - Refactor `lomtype.py` code

Issue - State: open - Opened by ghost about 5 years ago
Labels: refactor

#56 - Implement `self` for use in expressions

Issue - State: closed - Opened by ghost about 5 years ago
Labels: icing

#55 - Code action to export generated test job inputs

Issue - State: closed - Opened by ghost about 5 years ago - 1 comment
Labels: icing

#54 - User defined, imported type should show on hover

Issue - State: closed - Opened by ghost about 5 years ago
Labels: enhancement, icing, advanced cwl

#53 - Unknown field: name for type CommandInputRecordSchema

Issue - State: closed - Opened by ghost about 5 years ago - 1 comment
Labels: bug

#52 - Handle SchemaDefRequirement

Issue - State: closed - Opened by ghost about 5 years ago
Labels: advanced cwl

#51 - handle $namespaces

Issue - State: closed - Opened by ghost about 5 years ago
Labels: advanced cwl

#50 - Mechanism to evaluate JS

Issue - State: closed - Opened by ghost about 5 years ago - 1 comment
Labels: enhancement, icing

#49 - Create an input JSON from the CWL

Issue - State: closed - Opened by ghost about 5 years ago - 3 comments
Labels: enhancement, icing

#48 - File paths (and picker) does not work on windows

Issue - State: closed - Opened by ghost about 5 years ago
Labels: bug, cross-platform

#47 - Put workflow preview (VS Code) back

Issue - State: closed - Opened by ghost about 5 years ago
Labels: enhancement

#46 - VS Code plugin should auto-install Benten

Issue - State: closed - Opened by ghost about 5 years ago - 1 comment
Labels: enhancement

#45 - Not recognising CommandInputArraySchema

Issue - State: closed - Opened by illusional about 5 years ago - 5 comments
Labels: bug

#44 - Establish commands and command grammar

Issue - State: closed - Opened by ghost about 5 years ago - 1 comment
Labels: enhancement

#43 - Refactor feature: rename port or step

Issue - State: open - Opened by ghost about 5 years ago
Labels: enhancement

#42 - Refactor feature: group steps into sub-workflow

Issue - State: open - Opened by ghost about 5 years ago
Labels: enhancement

#41 - Add several "wild" CWL examples for integrative tests

Issue - State: closed - Opened by ghost about 5 years ago
Labels: internals, testing

#40 - documentation improvements:

Issue - State: closed - Opened by hmenager about 5 years ago - 1 comment
Labels: documentation

#39 - crash when editing a workflow

Issue - State: closed - Opened by hmenager about 5 years ago - 2 comments
Labels: bug

#38 - Refactor languagemodel.py and intelligence.py

Issue - State: closed - Opened by ghost about 5 years ago
Labels: internals, refactor

#37 - Validation errors in list show wrong line no

Issue - State: closed - Opened by ghost over 5 years ago
Labels: bug

#36 - Auto complete port source and outputSource fields

Issue - State: closed - Opened by ghost over 5 years ago
Labels: enhancement

#35 - Translate paths in CWL to Windows paths

Issue - State: closed - Opened by ghost over 5 years ago
Labels: bug, cross-platform

#34 - We can probably get rid of `config.ini`

Issue - State: closed - Opened by ghost over 5 years ago - 2 comments
Labels: refactor

#33 - creating a missing linked file does not reset "missing linked file"

Issue - State: open - Opened by ghost over 5 years ago
Labels: bug, annoyance

#32 - benten/models/workflow.py", line 58, in _definition requires better error catching

Issue - State: closed - Opened by ghost over 5 years ago
Labels: bug, error-tolerance

#31 - Workflow step interface should not break when sub-workflow is missing

Issue - State: closed - Opened by ghost over 5 years ago
Labels: bug, error-tolerance

#30 - Missing fields (e.g. run) should not error out because start/stop marks are missing

Issue - State: closed - Opened by ghost over 5 years ago
Labels: bug, error-tolerance

#29 - Last best model should still indicate issues with current parse

Issue - State: closed - Opened by ghost over 5 years ago - 1 comment
Labels: bug

#28 - Automatically add SubworkflowFeatureRequirement as needed

Issue - State: closed - Opened by ghost over 5 years ago - 1 comment
Labels: enhancement

#27 - Use heuristics and incremental compute to make sync algorithm faster

Issue - State: closed - Opened by ghost over 5 years ago - 1 comment
Labels: internals

#26 - JS evaluator

Issue - State: closed - Opened by ghost over 5 years ago - 1 comment
Labels: icing

#25 - Implement aliases. Implement example alias for `cwl-runner` type call

Issue - State: closed - Opened by ghost over 5 years ago - 1 comment
Labels: enhancement

#24 - Command history + history navigation

Issue - State: closed - Opened by ghost over 5 years ago
Labels: icing

#23 - Breadcrumb strip on top

Issue - State: closed - Opened by ghost over 5 years ago - 1 comment
Labels: enhancement, icing

#22 - Raise issues bar. Click to scroll to next issue

Issue - State: closed - Opened by ghost over 5 years ago
Labels: enhancement, icing

#21 - Process model will sometimes not update after an edit change

Issue - State: closed - Opened by ghost over 5 years ago
Labels: bug, annoyance

#20 - Move command pane to under editor pane. Make it toggle visible/hidden.

Issue - State: closed - Opened by ghost over 5 years ago - 1 comment
Labels: icing

#19 - Lock fields that we know are dict (like `steps`) from going to block

Issue - State: closed - Opened by ghost over 5 years ago
Labels: bug, annoyance

#18 - Refactor sync code to sync only when user switches tab

Issue - State: closed - Opened by ghost over 5 years ago
Labels: internals

#17 - Refactor sync edit algo to avoid chaining

Issue - State: closed - Opened by ghost over 5 years ago - 1 comment
Labels: internals

#16 - RuntimeError: Internal C++ object (ProcessView) already deleted.

Issue - State: closed - Opened by ghost over 5 years ago
Labels: bug, annoyance