r-spatialecology/spectre issues and pull requests

#124 - Revert "Updating for CRAN resubmission"

Pull Request - State: closed - Opened by csim063 almost 2 years ago

#123 - Updating for CRAN resubmission

Pull Request - State: closed - Opened by csim063 about 2 years ago - 7 comments

#122 - Update Citation information

Issue - State: open - Opened by mhesselbarth about 2 years ago - 1 comment

#121 - add fixed_species "needs" matrix orientation check

Issue - State: closed - Opened by mspngnbrg over 2 years ago - 1 comment

#120 - Removing manuscript from Git, don't want issues with submission

Pull Request - State: closed - Opened by csim063 about 3 years ago

#119 - :sparkles: Adding printing method for optimization

Pull Request - State: closed - Opened by mhesselbarth about 3 years ago - 7 comments

#118 - :zap: Add autostop feature

Pull Request - State: closed - Opened by bitbacchus about 3 years ago - 6 comments

#117 - :zap: run_optimization_min_conf now allows the continuation of a prev…

Pull Request - State: closed - Opened by bitbacchus about 3 years ago - 1 comment

#116 - Homepage

Issue - State: closed - Opened by mhesselbarth about 3 years ago - 10 comments
Labels: enhancement, question, small effort

#115 - Ensuring CRAN and main are the same post CRAN release

Pull Request - State: closed - Opened by csim063 over 3 years ago

#114 - Version 1.0.2 rerelease

Pull Request - State: closed - Opened by csim063 over 3 years ago - 1 comment

#113 - Version 1.0.2 submission

Pull Request - State: closed - Opened by csim063 over 3 years ago

#112 - "alpha_list", "estimated_gamma", and "target_matrix" (data objects) in data-raw/ obsolete?

Issue - State: open - Opened by mspngnbrg over 3 years ago - 1 comment

#111 - Remove explicit call to gdm

Issue - State: closed - Opened by csim063 over 3 years ago - 6 comments

#110 - parameter naming: target vs. objective

Issue - State: closed - Opened by mspngnbrg over 3 years ago

#109 - fixed seed somewhere?

Issue - State: closed - Opened by mspngnbrg over 3 years ago - 10 comments

#108 - add linebreak after output message

Issue - State: closed - Opened by mspngnbrg over 3 years ago

#107 - Fix integer overflow (memtest) issue

Pull Request - State: closed - Opened by bitbacchus over 3 years ago - 2 comments

#106 - delete vignettes/getting_started_with_spectre.R?

Issue - State: closed - Opened by mspngnbrg over 3 years ago - 2 comments

#105 - Craig cpp

Pull Request - State: closed - Opened by csim063 over 3 years ago - 2 comments

#104 - keep main up to date with release

Pull Request - State: closed - Opened by csim063 over 3 years ago

#103 - Namespace note

Pull Request - State: closed - Opened by csim063 over 3 years ago

#102 - Fix #101

Pull Request - State: closed - Opened by bitbacchus over 3 years ago

#101 - Solaris: test-minconf.cpp:95:69: error: ‘Approx’ was not declared in this scope

Issue - State: closed - Opened by bitbacchus over 3 years ago - 9 comments

#100 - Namespace note

Pull Request - State: closed - Opened by csim063 over 3 years ago

#99 - spectre v1.0

Pull Request - State: closed - Opened by mhesselbarth over 3 years ago

#98 - Clean branches

Issue - State: open - Opened by mhesselbarth over 3 years ago - 2 comments

#97 - dev -> main

Pull Request - State: closed - Opened by bitbacchus over 3 years ago - 1 comment

#96 - Un-diverge dev

Pull Request - State: closed - Opened by bitbacchus over 3 years ago - 1 comment

#95 - Future todo items

Issue - State: open - Opened by csim063 over 3 years ago - 5 comments

#94 - CRAN submission checklist

Issue - State: closed - Opened by mhesselbarth over 3 years ago - 8 comments

#93 - Dev -> Main

Pull Request - State: closed - Opened by bitbacchus over 3 years ago - 3 comments

#92 - Doc cleaning

Pull Request - State: closed - Opened by bitbacchus over 3 years ago

#91 - Clean vignette and readme

Issue - State: closed - Opened by csim063 over 3 years ago

#90 - Vignettes folder

Issue - State: closed - Opened by csim063 over 3 years ago - 4 comments

#89 - Redundant scripts?

Issue - State: closed - Opened by csim063 over 3 years ago

#88 - CMD errors and warnings

Issue - State: closed - Opened by csim063 over 3 years ago - 3 comments

#87 - package NLMR not available for this R-Version - build fail

Issue - State: closed - Opened by mspngnbrg over 3 years ago - 3 comments

#86 - Metropolis & Bray-Curtis, easy implementation

Issue - State: closed - Opened by mspngnbrg over 3 years ago - 3 comments

#85 - Changed the remaining "energy" labels to "error" including in global …

Pull Request - State: closed - Opened by bitbacchus over 3 years ago

#84 - Energy rename

Pull Request - State: closed - Opened by csim063 over 3 years ago - 1 comment

#83 - Doxygen #71

Pull Request - State: closed - Opened by bitbacchus over 3 years ago

#82 - Merge #78 and #79

Pull Request - State: closed - Opened by bitbacchus over 3 years ago

#81 - Warning compilation flag

Issue - State: closed - Opened by mhesselbarth almost 4 years ago - 4 comments

#80 - License

Issue - State: closed - Opened by mhesselbarth almost 4 years ago - 3 comments

#79 - Unkown folders

Issue - State: closed - Opened by mhesselbarth almost 4 years ago - 2 comments

#78 - Vignettes folder

Issue - State: closed - Opened by mhesselbarth almost 4 years ago - 2 comments

#77 - Data folder

Issue - State: closed - Opened by mhesselbarth almost 4 years ago - 5 comments

#76 - Imports and Suggests

Issue - State: closed - Opened by mhesselbarth almost 4 years ago - 10 comments
Labels: discussion needed

#75 - Unit tests missing

Issue - State: closed - Opened by bitbacchus almost 4 years ago - 3 comments

#74 - code coverage and fancy badges

Issue - State: closed - Opened by bitbacchus almost 4 years ago - 5 comments

#73 - C++ Code clean up #48

Pull Request - State: closed - Opened by bitbacchus almost 4 years ago

#72 - Remove spectre_rcpp_dev ?

Issue - State: closed - Opened by bitbacchus almost 4 years ago

#71 - C++ Documentation

Issue - State: closed - Opened by bitbacchus almost 4 years ago

#70 - Perf 2 documentation

Pull Request - State: closed - Opened by bitbacchus almost 4 years ago

#69 - Add Benchmarks

Pull Request - State: closed - Opened by bitbacchus almost 4 years ago

#68 - superfluous code in minconf.cpp ?

Issue - State: closed - Opened by mspngnbrg almost 4 years ago - 1 comment

#67 - :sparkles: Continuous benchmarking #65

Pull Request - State: closed - Opened by bitbacchus almost 4 years ago

#66 - Fixed species #61

Pull Request - State: closed - Opened by bitbacchus almost 4 years ago

#65 - Add continious benchmarking

Issue - State: closed - Opened by bitbacchus almost 4 years ago

#64 - Bugfix#63

Pull Request - State: closed - Opened by bitbacchus almost 4 years ago

#63 - Perfect solution must result in error == 0

Issue - State: closed - Opened by bitbacchus almost 4 years ago - 2 comments

#62 - Replace "Energy" with "Error" everywhere

Issue - State: closed - Opened by bitbacchus almost 4 years ago - 2 comments

#61 - Improved 'fixed_species' parameter

Issue - State: closed - Opened by bitbacchus almost 4 years ago - 4 comments

#60 - unknown macro(s) '\alpha' and '\beta'

Issue - State: closed - Opened by mspngnbrg almost 4 years ago - 1 comment

#59 - Re-enable gh actions with macOS

Issue - State: closed - Opened by bitbacchus almost 4 years ago

#58 - Perf 2 merge

Pull Request - State: closed - Opened by bitbacchus almost 4 years ago

#57 - Perf 2 documentation

Pull Request - State: closed - Opened by csim063 almost 4 years ago

#56 - Fixes #46

Pull Request - State: closed - Opened by bitbacchus almost 4 years ago

#55 - "new" min_conf is very slow

Issue - State: closed - Opened by mspngnbrg about 4 years ago - 1 comment

#54 - Merge dev to update to current state & code cleanup (#48)

Pull Request - State: closed - Opened by bitbacchus about 4 years ago - 3 comments

#53 - add feature "fixed_species" to min_conf algorithm?

Issue - State: closed - Opened by mspngnbrg about 4 years ago - 2 comments

#52 - Add description for min conf algorithm

Issue - State: closed - Opened by bitbacchus about 4 years ago
Labels: medium effort

#51 - Sorensen 2 merge with dev

Pull Request - State: closed - Opened by bitbacchus about 4 years ago

#50 - Check parallelization

Issue - State: closed - Opened by bitbacchus about 4 years ago
Labels: small effort

#49 - Replace "Energy"with RCE

Issue - State: closed - Opened by bitbacchus about 4 years ago
Labels: priority, medium effort

#48 - Code cleanup

Issue - State: closed - Opened by bitbacchus over 4 years ago - 1 comment
Labels: priority, huge effort

#47 - Local minima: accept imperfect solutions (epsilon-replacement)

Issue - State: closed - Opened by mspngnbrg over 4 years ago
Labels: priority, medium effort

#46 - if fixed species > richness at a a site, min_conf_0 gets stuck in a loop

Issue - State: closed - Opened by mspngnbrg over 4 years ago - 1 comment
Labels: bug, priority, small effort

#45 - Accept only solutions where alpha diversity constraint is fulfilled

Issue - State: closed - Opened by bitbacchus over 4 years ago
Labels: medium effort

#44 - Rename master branch -> main branch

Issue - State: closed - Opened by bitbacchus over 4 years ago - 1 comment
Labels: discussion needed

#43 - Allow approximate solutions

Issue - State: closed - Opened by bitbacchus over 4 years ago
Labels: priority, medium effort

#42 - re-implement weighting function for "known species/sites"

Issue - State: closed - Opened by mspngnbrg over 4 years ago - 2 comments

#41 - desired returns of the algorithm

Issue - State: closed - Opened by mspngnbrg over 4 years ago - 1 comment

#40 - naming1: discrepancy D or energy E?

Issue - State: closed - Opened by mspngnbrg over 4 years ago - 2 comments
Labels: discussion needed

#39 - Use R's RNG in Rcpp code

Issue - State: closed - Opened by bitbacchus over 4 years ago - 2 comments
Labels: medium effort

#38 - Add skip-ci option to gh actions

Issue - State: closed - Opened by bitbacchus over 4 years ago - 1 comment

#37 - return "best" solution, instead of last solution

Issue - State: closed - Opened by mspngnbrg over 4 years ago - 4 comments
Labels: priority, small effort

#36 - make spectre stoppable

Issue - State: closed - Opened by mspngnbrg over 4 years ago - 6 comments
Labels: small effort

#35 - [dev] run_optimization_min_conf_0 returns NaN when target is filled w zeros

Issue - State: closed - Opened by bitbacchus over 4 years ago - 1 comment

#28 - Get rid of ggplot2

Issue - State: closed - Opened by mhesselbarth about 5 years ago - 6 comments
Labels: discussion needed

#27 - TODO

Issue - State: closed - Opened by csim063 over 5 years ago - 2 comments

#22 - Inaccurate solutions

Issue - State: closed - Opened by csim063 over 5 years ago - 5 comments

#20 - Weighted species selection for initial solution

Issue - State: closed - Opened by csim063 over 5 years ago - 7 comments
Labels: priority, medium effort

GitHub / r-spatialecology/spectre issues and pull requests