qurit/rt-utils issues and pull requests

#118 - Development

Pull Request - State: open - Opened by qurit-frizi 2 months ago

#117 - Update README.md

Pull Request - State: open - Opened by qurit-frizi 2 months ago

#116 - Add files via upload

Pull Request - State: open - Opened by qurit-frizi 3 months ago

#115 - use_pin_hole (x,y) vs (y,x)

Issue - State: open - Opened by Kimhasen 4 months ago - 1 comment

#114 - RT-Struct does not always align with the original CT Scan

Issue - State: open - Opened by Joshua-Roche 4 months ago - 1 comment

#113 - No SOPClass UID after add_roi

Issue - State: open - Opened by marrissa-mcintosh 5 months ago

#112 - Update README.md

Pull Request - State: closed - Opened by qurit-frizi 5 months ago

#111 - Enhancement for API use

Pull Request - State: open - Opened by VendenIX 5 months ago

#110 - NIfTI to RTStruct - no registration with CT (rotation problem?)

Issue - State: open - Opened by balduz94 5 months ago

#109 - Error when using platipy.dicom.io.nifti_to_rtruct function to convert nii to rtstruct: the Mask must have the number of layers saved (in dimension 3) as an input sequence. Expected 65, result 13

Issue - State: open - Opened by 1413194910 7 months ago

#108 - How to use rt-utils to convert nii files to dicom (rtstruct)?

Issue - State: closed - Opened by 1413194910 7 months ago

#107 - Add ROI from coordinates

Pull Request - State: open - Opened by gacou54 7 months ago - 1 comment

#106 - rt-utils fails on "Radiation therapy simulation head ..."

Issue - State: open - Opened by dyollb 7 months ago

#105 - Fixed corrupt data bug for sequence creation that created a warning in our treatment planning software

Pull Request - State: open - Opened by MLK97 8 months ago

#104 - Handling list of DICOM datasets reference when creating rtstruct

Pull Request - State: open - Opened by gacou54 8 months ago

#103 - Update requirements.txt

Pull Request - State: open - Opened by Brian-Taylor8 8 months ago

#102 - RtStruct saved from nifti appears rotated.

Issue - State: open - Opened by rtdicomexplorer 9 months ago - 5 comments

#101 - Hotfixes for issues 87, 97, 98

Pull Request - State: closed - Opened by jrenslo 10 months ago - 1 comment

#100 - revised get_roi_names for geometric type (#99)

Pull Request - State: open - Opened by mffield 11 months ago

#99 - Return ROI names of geometric type

Issue - State: open - Opened by mffield 11 months ago

#98 - Acquisition Count > 1 not supported

Issue - State: open - Opened by jrenslo 11 months ago

#97 - Nonuniform slice thickness

Issue - State: open - Opened by jrenslo 11 months ago

#96 - fix: SeriesInstanceUID fix (compatibility with other software)

Pull Request - State: open - Opened by code-lukas 12 months ago - 1 comment

#95 - ROIException Error

Issue - State: open - Opened by lionmsk11 about 1 year ago

#94 - Add default values for some DICOM fields

Pull Request - State: open - Opened by jeffbaumes about 1 year ago

#93 - RTs to .nii.gz conversion issue

Issue - State: open - Opened by TmnGitHub about 1 year ago - 1 comment

#92 - PixelSpacing incorrectly taken into account

Issue - State: open - Opened by VincentMorard about 1 year ago - 2 comments

#91 - Add constrain on opencv version

Pull Request - State: closed - Opened by plesqui about 1 year ago

#90 - Gaussian smoothing

Pull Request - State: open - Opened by mathiser over 1 year ago - 6 comments

#89 - Preferred Way to Cite this Repository

Issue - State: closed - Opened by edwardwang1 over 1 year ago - 1 comment

#88 - Empty series and slice mask functions column rather than row first

Issue - State: open - Opened by nieag over 1 year ago - 2 comments

#87 - cv.fillPoly() exception when running rtstruct.get_roi_mask_by_name

Issue - State: open - Opened by tomaroberts over 1 year ago - 10 comments

#86 - Pixelated contours preferred

Issue - State: open - Opened by sunyu0410 over 1 year ago

#85 - Update README.md

Pull Request - State: closed - Opened by qurit-frizi over 1 year ago

#84 - nifti mask to RT-struct dicom

Issue - State: closed - Opened by qurit-frizi over 1 year ago - 6 comments

#83 - File type for ML masks

Issue - State: closed - Opened by MattAWard over 1 year ago - 3 comments

#82 - image(s) that are not contained in input series

Issue - State: open - Opened by karllandheer over 1 year ago

#81 - Round contour.ContourData to 10 decimal places

Pull Request - State: closed - Opened by tomaroberts over 1 year ago - 5 comments

#80 - Apply limit to decimal places of ContourData DICOM item

Issue - State: open - Opened by tomaroberts over 1 year ago - 1 comment

#79 - Support adding ROIs from polygon data

Pull Request - State: open - Opened by zeakey over 1 year ago

#78 - ROI_number attribution

Pull Request - State: open - Opened by FabienRech over 1 year ago - 3 comments

#77 - Add ROIs from polygons

Issue - State: open - Opened by zeakey over 1 year ago - 3 comments

#76 - Rtstruct Referencing Multiple CT Image Series

Issue - State: open - Opened by DJ-CHB over 1 year ago - 2 comments

#75 - Add information and MWE for RTStructMerger to README

Pull Request - State: closed - Opened by rheg49 over 1 year ago

#74 - Add information and MWE for RTStructMerger to README

Pull Request - State: closed - Opened by rheg49 over 1 year ago

#73 - Add DICOM attribute `RTROIInterpretedType` as optional parameter to `add_roi` and `ROIData`

Issue - State: open - Opened by rheg49 over 1 year ago

#72 - Add unit tests for merging RT Structs

Issue - State: open - Opened by asim-shrestha over 1 year ago

#71 - path_length

Issue - State: closed - Opened by FabienRech over 1 year ago - 2 comments

#70 - Add shorthand function to merge two pre-existing RTStruct structure sets

Pull Request - State: closed - Opened by rheg49 over 1 year ago - 6 comments

#69 - Fix missing import

Pull Request - State: closed - Opened by Zhack47 over 1 year ago

#68 - Make ContourSequence optional

Pull Request - State: closed - Opened by MaxenceLarose over 1 year ago - 3 comments

#67 - Contour Sequence should be optional.

Issue - State: closed - Opened by MaxenceLarose over 1 year ago - 1 comment

#66 - ROI_number

Issue - State: open - Opened by FabienRech over 1 year ago - 3 comments

#65 - 🔢 Use existing frame of reference uid if available

Pull Request - State: closed - Opened by asim-shrestha over 1 year ago

#64 - Parameter to reduce the error to a warning #63

Pull Request - State: closed - Opened by Zhack47 almost 2 years ago - 1 comment

#63 - Change from Exception to warning when the rt's ReferencedSOPInstanceUID is different from the CT's SOPInstanceUID

Issue - State: closed - Opened by Zhack47 almost 2 years ago - 1 comment

#62 - ValueError: could not broadcast input array from shape (512,512) into shape (156,105)

Issue - State: open - Opened by Suman-c21 almost 2 years ago - 2 comments

#61 - Error accessing one ROI name

Issue - State: open - Opened by ttkrpink almost 2 years ago - 1 comment

#60 - How to create mask for tandem and ovoid?

Issue - State: open - Opened by Suman-c21 about 2 years ago - 11 comments

#59 - 56: Allow empty ROIs to be inserted

Pull Request - State: closed - Opened by asim-shrestha about 2 years ago

#58 - Switch to using a logger

Issue - State: open - Opened by asim-shrestha about 2 years ago

#57 - 📝 55 - Remove "Skipping empty mask layer" print

Pull Request - State: closed - Opened by asim-shrestha about 2 years ago
Labels: enhancement

#56 - Allow adding empty ROIs

Issue - State: closed - Opened by mathiser about 2 years ago - 4 comments

#55 - Please remove "Skipping empty mask layer" print statement...

Issue - State: closed - Opened by mathiser about 2 years ago - 1 comment

#54 - pydicom 2.1.2 requirement

Issue - State: closed - Opened by tionichm about 2 years ago - 3 comments

#53 - Fix filling of rois when there are holes

Pull Request - State: closed - Opened by igorhlx over 2 years ago

#52 - add roi to existing structure set

Issue - State: open - Opened by nadKo375 over 2 years ago - 1 comment

#51 - suggestion to avoid issue when multiple types of files are in the same folder

Issue - State: open - Opened by EmmaSkarsoe over 2 years ago - 4 comments

#50 - the possibility of changing one of ROIs volumes.

Issue - State: open - Opened by arasheb2001 over 2 years ago - 1 comment

#49 - AttributeError: 'Dataset' object has no attribute 'ContourImageSequence'

Issue - State: closed - Opened by JunMa11 over 2 years ago

#48 - Run Linter on main branch

Pull Request - State: closed - Opened by awtkns over 2 years ago

#47 - add ability to retrieve ROI names in a case insensitive way

Pull Request - State: open - Opened by raffaelespinoni over 2 years ago - 3 comments

#46 - Delete ROI

Issue - State: open - Opened by IlvaHou55 over 2 years ago - 2 comments

#45 - Not compatible with open-cv < 4.0.0

Issue - State: open - Opened by plesqui over 2 years ago

#44 - add ability to retrieve ROI names in a case insensitive way

Issue - State: open - Opened by raffaelespinoni over 2 years ago - 2 comments

#43 - Update in ds_helper to support import to Pinnacle

Pull Request - State: closed - Opened by CaB15 over 2 years ago - 5 comments

#42 - Add Python 3.10 to list of supported versions

Pull Request - State: closed - Opened by awtkns over 2 years ago

#41 - Add Documented Support for Python 3.10

Pull Request - State: closed - Opened by awtkns over 2 years ago - 1 comment

#40 - Add Code Formatter

Pull Request - State: closed - Opened by awtkns over 2 years ago - 1 comment

#39 - Use force=True to force reading in rt_utils/image_helper.py (load_dcm_images_from_path )

Issue - State: open - Opened by xfuren over 2 years ago - 3 comments

#38 - #33 optional rt referenced study sequence

Pull Request - State: closed - Opened by asim-shrestha over 2 years ago

#37 - 35 update

Pull Request - State: closed - Opened by asim-shrestha over 2 years ago

#36 - Ability to load SPECT image masks

Issue - State: open - Opened by asim-shrestha over 2 years ago - 1 comment

#35 - fixing tuple issue and adding meta data independence option

Pull Request - State: closed - Opened by smichi23 almost 3 years ago - 3 comments

#34 - Creating contour sequences with SOPInstanceUID instead of using the MediaStorageSOPInstanceUID

Issue - State: closed - Opened by smichi23 almost 3 years ago - 1 comment

#33 - RTReferencedStudySequence not present in RTSTRUCT dicom file?

Issue - State: closed - Opened by IlvaHou55 almost 3 years ago - 2 comments

#32 - issue with saggital MR scans

Issue - State: open - Opened by ceps1986 almost 3 years ago - 4 comments

#31 - Not support old version DICOM

Issue - State: closed - Opened by doumeng almost 3 years ago

#30 - tuple issue

Issue - State: closed - Opened by Jkallehauge almost 3 years ago - 4 comments

#29 - RTStruct FrameOfReferenceUID is not matching with the reference CT

Issue - State: closed - Opened by jinkoo2 about 3 years ago - 8 comments

#28 - 27 roigeneration algorithm

Pull Request - State: closed - Opened by ThomasBudd about 3 years ago - 6 comments

#27 - AUTOMATIC ROIGenerationAlgorithm

Issue - State: closed - Opened by asim-shrestha about 3 years ago - 1 comment
Labels: enhancement, good first issue, help wanted

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