Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / qupath/qupath issues and pull requests

#1652 - Javadoc jars are missing from QuPath installations

Issue - State: open - Opened by petebankhead 9 days ago
Labels: bug

#1651 - Prepare for v0.6.0-rc2

Pull Request - State: closed - Opened by petebankhead 9 days ago

#1650 - Support message for TaskRunner

Pull Request - State: closed - Opened by petebankhead 9 days ago

#1649 - Added Zarr writer GUI command

Pull Request - State: closed - Opened by Rylern 10 days ago - 1 comment

#1648 - Delay firing menu items from command list

Pull Request - State: closed - Opened by petebankhead 11 days ago

#1647 - Some commands cannot be run from Command List

Issue - State: closed - Opened by petebankhead 11 days ago
Labels: bug

#1646 - RAM is not freed when opening new images within a project

Issue - State: closed - Opened by GXcells 11 days ago - 1 comment
Labels: bug

#1645 - BioFormats tile size fix

Pull Request - State: closed - Opened by Rylern 11 days ago - 2 comments

#1644 - Shorten Classifications menu for easier access

Issue - State: open - Opened by lacan 11 days ago - 1 comment
Labels: enhancement

#1643 - Ensure tests use UTF-8

Pull Request - State: closed - Opened by petebankhead 13 days ago

#1642 - Update to DJL v0.30.0

Pull Request - State: closed - Opened by petebankhead 13 days ago

#1641 - Zarr writer and ConvertCommand improvements

Pull Request - State: closed - Opened by Rylern 13 days ago - 1 comment

#1640 - Deep Java Library problem

Issue - State: closed - Opened by RAHoebe 13 days ago - 4 comments
Labels: bug

#1639 - Speed up object masking

Pull Request - State: closed - Opened by petebankhead 16 days ago

#1638 - Support remote ome-zarr

Pull Request - State: closed - Opened by petebankhead 16 days ago - 1 comment

#1637 - Back to snapshot version

Pull Request - State: closed - Opened by petebankhead 16 days ago

#1636 - Cannot make DJL pytorch work for instanseg

Issue - State: closed - Opened by GXcells 17 days ago - 1 comment
Labels: bug

#1635 - StarDist extension doesn't work with QuPath 0.6

Issue - State: closed - Opened by ofrag 17 days ago - 3 comments
Labels: bug

#1634 - No CUDA available in instantseg

Issue - State: closed - Opened by GXcells 17 days ago - 1 comment
Labels: bug

#1633 - Update extensions, exclude transitive

Pull Request - State: closed - Opened by petebankhead 18 days ago

#1632 - Update for rc1

Pull Request - State: closed - Opened by petebankhead 18 days ago

#1631 - Attempt to bundle extensions

Pull Request - State: closed - Opened by petebankhead 18 days ago

#1630 - Update ConvertCommand

Pull Request - State: closed - Opened by petebankhead 18 days ago

#1629 - Improve parsing of timepoints

Pull Request - State: closed - Opened by petebankhead 18 days ago

#1628 - Timepoint data is rarely available (or correct)

Issue - State: closed - Opened by petebankhead 18 days ago
Labels: bug

#1627 - Recognize (ome).zarr with drag & drop

Pull Request - State: closed - Opened by petebankhead 19 days ago

#1626 - Upgrade gradle, dependences

Pull Request - State: closed - Opened by petebankhead 19 days ago

#1625 - Add Zarr support for convert-ome command

Pull Request - State: closed - Opened by Rylern 20 days ago - 4 comments

#1624 - Minor fixes

Pull Request - State: closed - Opened by petebankhead 23 days ago

#1623 - Change detection line thickness when upsampling

Pull Request - State: closed - Opened by petebankhead 24 days ago - 2 comments

#1622 - Fix thumbnail reappearing bug in projects

Pull Request - State: closed - Opened by petebankhead 24 days ago

#1621 - Introduce ObjectProcessor interface

Pull Request - State: closed - Opened by petebankhead 25 days ago - 2 comments

#1620 - Better handle symlinks

Pull Request - State: closed - Opened by petebankhead 25 days ago - 5 comments

#1619 - New OverlapFixer class

Pull Request - State: closed - Opened by petebankhead 27 days ago

#1618 - Add Intersection-over-Minimum merger

Pull Request - State: closed - Opened by petebankhead 30 days ago

#1617 - Remove ImageServer.finalize()

Pull Request - State: closed - Opened by petebankhead 30 days ago

#1616 - Update Guava, JTS

Pull Request - State: closed - Opened by petebankhead 30 days ago

#1615 - Reorder cell measurement names

Pull Request - State: closed - Opened by petebankhead about 1 month ago

#1614 - ROI-geometry conversion

Pull Request - State: closed - Opened by petebankhead about 1 month ago

#1613 - Right-click to change TMA core classification

Pull Request - State: closed - Opened by petebankhead about 1 month ago

#1612 - Use headings in templates

Pull Request - State: closed - Opened by petebankhead about 1 month ago

#1611 - Fix spacebar locked on in viewers

Pull Request - State: closed - Opened by petebankhead about 1 month ago

#1610 - Spacebar can be locked in an 'on' position within viewers

Issue - State: closed - Opened by petebankhead about 1 month ago
Labels: bug

#1609 - 有中文汉化包吗

Issue - State: closed - Opened by wangchen789 about 1 month ago - 1 comment
Labels: question (please use image.sc!)

#1608 - Fix minor bugs, warnings & update gradlew

Pull Request - State: closed - Opened by petebankhead about 1 month ago

#1607 - Fix out-of-bounds cell detection

Pull Request - State: closed - Opened by petebankhead about 1 month ago

#1606 - Out-of-bounds tiles can result in detected cells being in the wrong place

Issue - State: closed - Opened by petebankhead about 1 month ago
Labels: bug

#1605 - Extended Validation Code Signing Certificate

Issue - State: closed - Opened by ojdeboer about 1 month ago - 1 comment
Labels: question (please use image.sc!)

#1604 - Reinstate mergedJavadocs

Pull Request - State: closed - Opened by petebankhead about 1 month ago - 1 comment

#1603 - Update to Java 21

Pull Request - State: closed - Opened by petebankhead about 1 month ago - 2 comments

#1602 - Warn if similar classification & default colors

Pull Request - State: closed - Opened by petebankhead about 1 month ago

#1601 - Make viewer options persistent

Pull Request - State: closed - Opened by petebankhead about 1 month ago - 3 comments

#1600 - Support temporary selection mode

Pull Request - State: closed - Opened by petebankhead about 1 month ago

#1599 - Selection mode improvements

Pull Request - State: closed - Opened by petebankhead about 1 month ago

#1598 - Code cleanup

Pull Request - State: closed - Opened by petebankhead about 1 month ago - 1 comment

#1597 - Add findNeighbors support to hierarchy

Pull Request - State: closed - Opened by petebankhead about 1 month ago - 1 comment

#1596 - Update DelaunayTools.java

Pull Request - State: closed - Opened by petebankhead about 1 month ago

#1595 - Fix display of underscores in class names

Pull Request - State: closed - Opened by petebankhead about 1 month ago

#1594 - Cleanup, remove deprecated methods

Pull Request - State: closed - Opened by petebankhead about 1 month ago

#1593 - Streamline PathObject and simplify working with classifications

Pull Request - State: closed - Opened by petebankhead about 1 month ago

#1592 - Improve MeasurementList implementation

Pull Request - State: closed - Opened by petebankhead about 1 month ago

#1591 - MeasurementList is not fully thread-safe

Issue - State: closed - Opened by petebankhead about 1 month ago - 1 comment
Labels: bug

#1590 - Questionable behavior with Delaunay cluster features

Issue - State: open - Opened by petebankhead about 1 month ago - 3 comments
Labels: bug

#1589 - Update dependencies

Pull Request - State: closed - Opened by petebankhead about 1 month ago

#1588 - PathClass in TMA grid view

Pull Request - State: closed - Opened by alanocallaghan about 1 month ago - 7 comments

#1587 - Improve metadata handling for projects and PathObjects

Pull Request - State: closed - Opened by petebankhead about 1 month ago

#1586 - QuPath unable to open images using symbolic links

Issue - State: closed - Opened by Rafael-Silva-Oliveira about 2 months ago - 1 comment
Labels: bug

#1585 - Simplify PathIO

Pull Request - State: closed - Opened by petebankhead about 2 months ago

#1584 - Project sorting improvements

Pull Request - State: closed - Opened by Rylern about 2 months ago - 7 comments

#1583 - Added possibility to copy measurement map color map

Pull Request - State: closed - Opened by Rylern about 2 months ago - 1 comment

#1582 - Improve object name display in viewer

Pull Request - State: closed - Opened by petebankhead about 2 months ago

#1581 - Convert pixel type for BufferedImage and ImageServer

Pull Request - State: closed - Opened by petebankhead about 2 months ago

#1580 - Application keeps crashing/not responding

Issue - State: closed - Opened by spatts14 about 2 months ago - 3 comments
Labels: bug

#1579 - Avoid server loading during DefaultProject.saveImageData() if it was never loaded before

Pull Request - State: closed - Opened by carlocastoldi about 2 months ago - 2 comments

#1578 - Changed fireHierarchyChangedEvent to fireObjectAddedEvent

Pull Request - State: closed - Opened by Rylern about 2 months ago - 2 comments

#1577 - Close store if created in RenderedImageServer

Pull Request - State: closed - Opened by Rylern about 2 months ago - 2 comments

#1576 - Log less eagerly in DnnModel

Pull Request - State: closed - Opened by petebankhead about 2 months ago

#1575 - Use light scrollbars with javadocs

Pull Request - State: closed - Opened by petebankhead about 2 months ago - 1 comment

#1574 - Set Javadoc viewer scrollbars to light mode

Pull Request - State: closed - Opened by Rylern about 2 months ago

#1573 - Make script language fromString ignore case

Pull Request - State: closed - Opened by alanocallaghan about 2 months ago

#1572 - Support TMA core classification

Pull Request - State: closed - Opened by petebankhead about 2 months ago

#1571 - Add GeometryTools.findLargestPolygon(Geometry) method

Pull Request - State: closed - Opened by petebankhead about 2 months ago

#1570 - Split unit tests

Pull Request - State: closed - Opened by alanocallaghan about 2 months ago

#1569 - Dependency updates

Pull Request - State: closed - Opened by petebankhead about 2 months ago

#1563 - Improved methods to access objects from PathObjectHierarchy

Pull Request - State: closed - Opened by petebankhead 2 months ago - 7 comments

#1561 - Thread leak in RenderedImageServer

Issue - State: closed - Opened by jraufeisen 2 months ago - 6 comments
Labels: bug

#1558 - Add Collection<ShapeFeatures> method for adding measurements

Pull Request - State: closed - Opened by alanocallaghan 3 months ago - 6 comments

#1554 - Core code for stain normalization

Pull Request - State: closed - Opened by petebankhead 3 months ago - 3 comments

#1550 - Detection Centroid Distances does not work across detection types (Detections vs Cells)

Issue - State: open - Opened by lacan 3 months ago - 4 comments
Labels: bug

#1544 - Implement scatter plot in measurement table & two measure classifier

Pull Request - State: open - Opened by alanocallaghan 4 months ago - 3 comments

#1522 - ImageJ macro runner can't transfer both cell nuclei & boundaries

Issue - State: open - Opened by petebankhead 5 months ago
Labels: bug

#1517 - Make non-collapsible titledpanes not highlight on mouseover

Pull Request - State: closed - Opened by alanocallaghan 5 months ago - 6 comments

#1489 - Lazy-load ImageServer from ImageData

Pull Request - State: closed - Opened by petebankhead 6 months ago - 9 comments

#1487 - Undo/Redo unexpected behavior after importing from file

Issue - State: closed - Opened by SquidXTV 6 months ago - 4 comments
Labels: bug

#1466 - Added synchronization to NumericMeasurementList

Pull Request - State: closed - Opened by Rylern 8 months ago - 1 comment

#1447 - Change openslide loading behaviour

Pull Request - State: closed - Opened by alanocallaghan 9 months ago - 7 comments

#1444 - ConcurrentModificationException when working with measurements

Issue - State: closed - Opened by petebankhead 9 months ago - 15 comments
Labels: bug

#1436 - "Hide QuPath" on macOS opens "About" window instead of hiding window

Issue - State: closed - Opened by tbedau 10 months ago - 5 comments
Labels: bug, outside-qupath

#1221 - Feature request: Colorbar for measurements maps

Issue - State: closed - Opened by ofrag over 1 year ago
Labels: enhancement