qupath/qupath issues and pull requests

#1747 - Refactor summary measurements, add tooltips

Pull Request - State: open - Opened by petebankhead 7 days ago

#1746 - Annotations

Issue - State: closed - Opened by tkcaccia 10 days ago - 3 comments
Labels: bug

#1745 - InstanSeg : how to add a threshold

Issue - State: closed - Opened by Aurelie-tech 13 days ago - 1 comment
Labels: question (please use image.sc!)

#1744 - Update BioimageIoTools to handle 0.5 models

Pull Request - State: open - Opened by alanocallaghan 13 days ago

#1743 - Add tooltips to summary measurements

Pull Request - State: open - Opened by petebankhead 13 days ago

#1742 - Add filter text field to below measurement tables

Pull Request - State: closed - Opened by petebankhead 15 days ago - 1 comment

#1741 - Don't use parallel stream to find neighbors

Pull Request - State: closed - Opened by petebankhead 15 days ago

#1740 - Publish more jars to scijava maven

Pull Request - State: closed - Opened by petebankhead about 1 month ago

#1739 - Move project data to trash in EDT

Pull Request - State: open - Opened by petebankhead about 1 month ago - 5 comments

#1738 - QuPath window closes while removing an image from the project

Issue - State: open - Opened by marbre2 about 1 month ago - 4 comments
Labels: bug

#1737 - Update dependencies

Pull Request - State: closed - Opened by petebankhead about 1 month ago

#1736 - Rendered RGB export does not use gamma setting

Issue - State: open - Opened by Rylern about 1 month ago
Labels: bug

#1735 - Reduce errors when expanding nuclei

Pull Request - State: closed - Opened by petebankhead about 1 month ago

#1734 - Mac x64

Pull Request - State: closed - Opened by petebankhead about 1 month ago - 1 comment

#1733 - x86_64 macOS Unable to Use Latest PyTorch via DJL in QuPath 0.6

Issue - State: closed - Opened by jaredbrewer about 1 month ago - 4 comments

#1732 - Using OpenSlide, DICOM J2K wrong color with YBR_ICT and rejects YBR_RCT photometric interpretation

Issue - State: closed - Opened by dclunie about 1 month ago - 4 comments
Labels: bug

#1731 - Lack of code-signing makes installation hard on Windows and Mac

Issue - State: open - Opened by petebankhead about 1 month ago

#1730 - Fix 'Split annotations by lines' bug

Pull Request - State: closed - Opened by petebankhead about 1 month ago

#1729 - 'Split annotations by lines' does not work for z-stacks or time-series if line thickness > 0

Issue - State: closed - Opened by Pascal-bucketbreaker about 1 month ago - 2 comments
Labels: bug

#1728 - Make it possible to build QuPath with Fiji dependencies

Pull Request - State: closed - Opened by petebankhead about 1 month ago

#1727 - Update server metadata with display settings

Pull Request - State: closed - Opened by petebankhead about 1 month ago

#1726 - Channel colors are not stored properly when using saved display settings

Issue - State: closed - Opened by petebankhead about 1 month ago
Labels: bug

#1725 - Linux aarch64 mainline build regression

Issue - State: closed - Opened by cbuscaron about 1 month ago - 3 comments
Labels: bug

#1724 - Update OpenSlide/c-blosc

Pull Request - State: closed - Opened by petebankhead about 2 months ago - 1 comment

#1723 - Update jpackage.yml

Pull Request - State: closed - Opened by alanocallaghan about 2 months ago

#1722 - 'Deselection mode' when pressing Alt

Pull Request - State: closed - Opened by petebankhead about 2 months ago

#1721 - Add linux-arm64 platform

Pull Request - State: closed - Opened by petebankhead about 2 months ago - 2 comments

#1720 - Fix training images

Pull Request - State: closed - Opened by petebankhead about 2 months ago

#1719 - Better building, javadocs

Pull Request - State: closed - Opened by petebankhead about 2 months ago

#1718 - Improve includeBuild behavior

Pull Request - State: closed - Opened by petebankhead about 2 months ago

#1717 - Run gradle build on PR and main

Pull Request - State: closed - Opened by alanocallaghan about 2 months ago

#1716 - Extension manager integration

Pull Request - State: open - Opened by Rylern about 2 months ago - 10 comments

#1715 - add isSpatiallyTransformed to ImageServerMetadata

Pull Request - State: open - Opened by carlocastoldi about 2 months ago - 7 comments

#1714 - Set QuPath version in jpackage

Pull Request - State: closed - Opened by alanocallaghan about 2 months ago

#1713 - Remove not clear

Pull Request - State: closed - Opened by alanocallaghan about 2 months ago - 3 comments

#1712 - Set version in github action from version file

Pull Request - State: closed - Opened by alanocallaghan about 2 months ago

#1711 - Only three channels can be separated in my mIHC data

Issue - State: closed - Opened by huangzr123 about 2 months ago - 1 comment
Labels: bug

#1710 - Simplify config for version & extensions

Pull Request - State: closed - Opened by petebankhead about 2 months ago

#1709 - Improve support for extension development

Pull Request - State: closed - Opened by petebankhead about 2 months ago - 1 comment

#1708 - Parameterise version in gradle and GHA

Pull Request - State: closed - Opened by alanocallaghan about 2 months ago - 1 comment

#1707 - GitHub Action (probably) needs updated for new build scripts

Issue - State: closed - Opened by petebankhead about 2 months ago - 4 comments
Labels: bug

#1706 - Include QuPath version in catalog

Pull Request - State: closed - Opened by petebankhead about 2 months ago

#1706 - Include QuPath version in catalog

Pull Request - State: closed - Opened by petebankhead about 2 months ago

#1705 - Specify includeFlat/Build in properties

Pull Request - State: closed - Opened by petebankhead about 2 months ago

#1704 - Deselect in selection mode

Issue - State: closed - Opened by winglet0996 2 months ago - 1 comment
Labels: enhancement

#1703 - MSI installer tries to install in AppData even when runned in admin

Issue - State: closed - Opened by skid9000 2 months ago - 4 comments
Labels: bug

#1702 - Human-in-the-loop model training for deep-learning-based extensions

Issue - State: closed - Opened by winglet0996 2 months ago - 1 comment
Labels: enhancement

#1701 - Create training image does not work properly for z-stacks / time series

Issue - State: closed - Opened by ajay1685 2 months ago
Labels: bug

#1700 - Fix viewer mouse position

Pull Request - State: closed - Opened by petebankhead 2 months ago

#1699 - Bio-Formats 8.0.1

Pull Request - State: closed - Opened by petebankhead 2 months ago

#1698 - Use FontAwesome cog instead of icomoon

Pull Request - State: closed - Opened by alanocallaghan 2 months ago

#1697 - Mini viewer isn't updated if the aspect ratio of its parent viewer is "portrait" rather than "landscape"

Issue - State: closed - Opened by zindy 2 months ago - 1 comment
Labels: bug