quiltdata/quilt issues and pull requests

#4033 - Quilt3 v6.0.0a5

Pull Request - State: closed - Opened by sir-sigurd 9 days ago - 1 comment

#4032 - Qurator omni

Pull Request - State: open - Opened by nl0 9 days ago - 1 comment

#4031 - Rename Package._fix_sha256() to _calculate_missing_hashes() for clarity

Pull Request - State: open - Opened by sir-sigurd 9 days ago - 1 comment

#4030 - Bump pandocfilters to fix build

Pull Request - State: closed - Opened by sir-sigurd 9 days ago - 2 comments

#4029 - Bump requests from 2.31.0 to 2.32.2 in /lambdas/molecule

Pull Request - State: closed - Opened by dependabot[bot] 9 days ago
Labels: js dependencies, python

#4028 - Bump requests from 2.31.0 to 2.32.2 in /lambdas/s3hash

Pull Request - State: closed - Opened by dependabot[bot] 9 days ago
Labels: js dependencies, python

#4027 - Fix PhysicalKey to URI conversion in Python 3.12 on Windows

Pull Request - State: closed - Opened by dimaryaz 10 days ago - 3 comments

#4026 - Fix test brackets fail

Pull Request - State: closed - Opened by drernie 10 days ago - 2 comments

#4025 - Hotfix: `test_brackets` test

Pull Request - State: closed - Opened by fiskus 11 days ago - 2 comments

#4024 - Fix getting `writeFile` config property

Pull Request - State: closed - Opened by fiskus 11 days ago - 8 comments

#4023 - Update dependency dompurify to ^3.1.5

Pull Request - State: closed - Opened by renovate[bot] 12 days ago - 1 comment
Labels: js dependencies

#4022 - Update dependency loglevel to ^1.9.1

Pull Request - State: closed - Opened by renovate[bot] 12 days ago - 1 comment
Labels: js dependencies

#4021 - Upgrade sentry

Pull Request - State: closed - Opened by nl0 12 days ago - 1 comment

#4020 - Bump amazonlinux from 2023.4.20240528.0 to 2023.4.20240611.0 in /catalog

Pull Request - State: closed - Opened by dependabot[bot] 12 days ago - 1 comment
Labels: js dependencies, docker

#4019 - Bump amazonlinux from 2023.4.20240528.0 to 2023.4.20240611.0 in /s3-proxy

Pull Request - State: closed - Opened by dependabot[bot] 12 days ago - 3 comments
Labels: js dependencies, docker

#4018 - Qurator disclaimer a la ChatGPT

Pull Request - State: closed - Opened by fiskus 13 days ago - 1 comment

#4017 - Docs for multiple roles

Pull Request - State: closed - Opened by nl0 13 days ago - 1 comment

#4016 - Update dependency webpack-dev-server to ^4.15.2

Pull Request - State: closed - Opened by renovate[bot] 13 days ago - 1 comment
Labels: js dependencies

#4015 - Update dependency express to ^4.19.2

Pull Request - State: closed - Opened by renovate[bot] 13 days ago - 1 comment
Labels: js dependencies

#4014 - Update dependency classnames to ^2.5.1

Pull Request - State: closed - Opened by renovate[bot] 13 days ago - 1 comment
Labels: js dependencies

#4013 - Update dependency ajv to ^8.16.0

Pull Request - State: closed - Opened by renovate[bot] 13 days ago - 1 comment
Labels: js dependencies

#4012 - Update dependency typescript to v5

Pull Request - State: closed - Opened by renovate[bot] 14 days ago - 1 comment
Labels: js dependencies

#4011 - Bump urllib3 from 1.26.18 to 1.26.19 in /lambdas/pkgselect

Pull Request - State: closed - Opened by dependabot[bot] 14 days ago - 1 comment
Labels: js dependencies, python

#4010 - Bump urllib3 from 1.26.18 to 1.26.19 in /lambdas/s3hash

Pull Request - State: closed - Opened by dependabot[bot] 14 days ago
Labels: js dependencies, python

#4009 - Delete MARKETING mode support

Pull Request - State: closed - Opened by nl0 14 days ago - 1 comment

#4008 - Fix thumbnail lambda build error caused by numpy@2 release

Pull Request - State: closed - Opened by nl0 15 days ago - 1 comment

#4007 - Quilt3 v6.0.0a4

Pull Request - State: closed - Opened by sir-sigurd 15 days ago - 1 comment

#4006 - Bump urllib3 from 1.26.18 to 1.26.19 in /lambdas/pkgevents

Pull Request - State: closed - Opened by dependabot[bot] 15 days ago
Labels: js dependencies, python

#4005 - Bump urllib3 from 1.26.18 to 1.26.19 in /lambdas/status_reports

Pull Request - State: closed - Opened by dependabot[bot] 15 days ago - 1 comment
Labels: js dependencies, python

#4004 - Bump ws from 6.2.2 to 6.2.3 in /catalog

Pull Request - State: closed - Opened by dependabot[bot] 15 days ago - 2 comments
Labels: js dependencies, javascript

#4003 - Skip bad latest tenacity release to fix CI

Pull Request - State: closed - Opened by sir-sigurd 16 days ago - 1 comment

#4002 - Bump braces from 3.0.2 to 3.0.3 in /catalog

Pull Request - State: closed - Opened by dependabot[bot] 17 days ago - 3 comments
Labels: js dependencies, javascript

#4001 - Disable all actions by `actions = false`

Pull Request - State: closed - Opened by fiskus 19 days ago - 2 comments

#4000 - Bump debian from bullseye-20240513-slim to bullseye-20240612-slim in /lambdas/thumbnail

Pull Request - State: closed - Opened by dependabot[bot] 20 days ago
Labels: js dependencies, docker

#3999 - Drag'n'drop added/existing file entries, add empty folder

Pull Request - State: closed - Opened by fiskus 21 days ago - 7 comments

#3998 - Refactor chunk offsets calculations

Pull Request - State: closed - Opened by sir-sigurd 21 days ago - 1 comment

#3997 - Always use stdlib importlib.metadata

Pull Request - State: closed - Opened by sir-sigurd 26 days ago - 1 comment

#3996 - Better class signatures in docs

Pull Request - State: closed - Opened by sir-sigurd 26 days ago - 1 comment

#3995 - Bump tornado from 6.3.3 to 6.4.1 in /lambdas/preview

Pull Request - State: closed - Opened by dependabot[bot] 26 days ago
Labels: js dependencies, python

#3994 - Use `meta.validating` instead of manually control state

Pull Request - State: closed - Opened by fiskus 28 days ago - 1 comment

#3993 - Drop Python 3.8 support

Pull Request - State: closed - Opened by sir-sigurd 28 days ago - 1 comment

#3992 - Bump amazonlinux from 2023.4.20240416.0 to 2023.4.20240528.0 in /s3-proxy

Pull Request - State: closed - Opened by dependabot[bot] 28 days ago
Labels: js dependencies, docker

#3991 - Bump amazonlinux from 2023.4.20240416.0 to 2023.4.20240528.0 in /catalog

Pull Request - State: closed - Opened by dependabot[bot] 28 days ago
Labels: js dependencies, docker

#3990 - GraphQL-based quilt3.admin API

Pull Request - State: closed - Opened by sir-sigurd 29 days ago - 8 comments

#3989 - Qurator AI Assistant for summarizing file contents using Bedrock API

Pull Request - State: closed - Opened by fiskus about 1 month ago - 1 comment

#3988 - Don't fold GQL `Me` data, split code to `MobileSignIn`/`DesktopSignIn`

Pull Request - State: closed - Opened by fiskus about 1 month ago - 3 comments

#3987 - Bump requests from 2.31.0 to 2.32.2 in /lambdas/preview

Pull Request - State: closed - Opened by dependabot[bot] about 1 month ago
Labels: js dependencies, python

#3986 - Bump requests from 2.31.0 to 2.32.2 in /lambdas/pkgpush

Pull Request - State: closed - Opened by dependabot[bot] about 1 month ago
Labels: js dependencies, python

#3985 - Switch roles UI

Pull Request - State: closed - Opened by fiskus about 1 month ago - 2 comments

#3984 - gql for "me" and role switching

Pull Request - State: closed - Opened by nl0 about 1 month ago - 1 comment

#3983 - TSify `utils/Dialogs` and some related code

Pull Request - State: closed - Opened by nl0 about 1 month ago - 1 comment

#3982 - Multiple roles per user (management + switching, incl. GraphQL & TS)

Pull Request - State: closed - Opened by nl0 about 1 month ago - 11 comments

#3981 - Bump requests from 2.31.0 to 2.32.2 in /lambdas/indexer

Pull Request - State: closed - Opened by dependabot[bot] about 1 month ago
Labels: js dependencies, python

#3980 - Bump requests from 2.31.0 to 2.32.0 in /lambdas/s3select

Pull Request - State: closed - Opened by dependabot[bot] about 1 month ago
Labels: js dependencies, python

#3979 - Use promises for URLs in IGV to have fresh signing each time they used

Pull Request - State: closed - Opened by fiskus about 2 months ago - 4 comments

#3978 - Double the expiration time of URL signing

Pull Request - State: closed - Opened by fiskus about 2 months ago - 2 comments

#3977 - Bump debian from bullseye-20240423-slim to bullseye-20240513-slim in /lambdas/thumbnail

Pull Request - State: closed - Opened by dependabot[bot] about 2 months ago
Labels: js dependencies, docker

#3976 - Update CHANGELOG.md with minor grammatical fix

Pull Request - State: closed - Opened by akarve about 2 months ago - 1 comment

#3975 - Bump jinja2 from 3.1.3 to 3.1.4 in /testdocs

Pull Request - State: closed - Opened by dependabot[bot] about 2 months ago
Labels: js dependencies, python

#3974 - Bump jinja2 from 3.1.3 to 3.1.4 in /lambdas/status_reports

Pull Request - State: closed - Opened by dependabot[bot] about 2 months ago
Labels: js dependencies, python

#3973 - Bump jinja2 from 3.1.3 to 3.1.4 in /lambdas/preview

Pull Request - State: closed - Opened by dependabot[bot] about 2 months ago
Labels: js dependencies, python

#3972 - Bump tqdm from 4.66.1 to 4.66.3 in /lambdas/pkgpush

Pull Request - State: closed - Opened by dependabot[bot] 2 months ago
Labels: js dependencies, python

#3971 - Bump tqdm from 4.66.1 to 4.66.3 in /lambdas/s3hash

Pull Request - State: closed - Opened by dependabot[bot] 2 months ago
Labels: js dependencies, python

#3970 - Bump tqdm from 4.64.0 to 4.66.3 in /testdocs

Pull Request - State: closed - Opened by dependabot[bot] 2 months ago
Labels: js dependencies, python

#3969 - Pass codecov token in CI jobs

Pull Request - State: closed - Opened by sir-sigurd 2 months ago - 1 comment

#3968 - Calculate checksum from local file if upload optimization succeeds

Pull Request - State: closed - Opened by sir-sigurd 2 months ago - 1 comment

#3967 - Catalog: More search UI tweaks

Pull Request - State: closed - Opened by nl0 2 months ago

#3966 - Add docs for package events

Pull Request - State: closed - Opened by sir-sigurd 2 months ago

#3965 - Fix list formatting in EDP docs

Pull Request - State: closed - Opened by sir-sigurd 2 months ago

#3964 - Quilt3 v6.0.0a3

Pull Request - State: closed - Opened by sir-sigurd 2 months ago

#3963 - Bump debian from bullseye-20240408-slim to bullseye-20240423-slim in /lambdas/thumbnail

Pull Request - State: closed - Opened by dependabot[bot] 2 months ago
Labels: js dependencies, docker

#3962 - Robust handling of PFS cookies

Pull Request - State: closed - Opened by nl0 2 months ago - 2 comments

#3961 - Make containers readonlyrootFileSystem=true compatible

Pull Request - State: closed - Opened by sir-sigurd 2 months ago

#3960 - Search UI QoL improvements

Pull Request - State: closed - Opened by nl0 2 months ago

#3959 - Bump amazonlinux from 2023.4.20240401.1 to 2023.4.20240416.0 in /catalog

Pull Request - State: closed - Opened by dependabot[bot] 2 months ago
Labels: js dependencies, docker

#3958 - Bump amazonlinux from 2023.4.20240401.1 to 2023.4.20240416.0 in /s3-proxy

Pull Request - State: closed - Opened by dependabot[bot] 2 months ago - 1 comment
Labels: js dependencies, docker

#3957 - Bump aiohttp from 3.9.2 to 3.9.4 in /lambdas/status_reports

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago
Labels: js dependencies, python

#3956 - Bump aiohttp from 3.9.2 to 3.9.4 in /lambdas/tabular_preview

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago
Labels: js dependencies, python

#3955 - Bump aiohttp from 3.9.3 to 3.9.4 in /lambdas/s3hash

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago
Labels: js dependencies, python

#3954 - Update dependency ngl to ^2.2.2

Pull Request - State: closed - Opened by renovate[bot] 3 months ago
Labels: js dependencies

#3953 - Update dependency echarts to ^5.5.0

Pull Request - State: closed - Opened by renovate[bot] 3 months ago
Labels: js dependencies

#3952 - Update dependency igv to ^2.15.11

Pull Request - State: closed - Opened by renovate[bot] 3 months ago
Labels: js dependencies

#3951 - s3-proxy: remove mentions of REGISTRY_HOST env var

Pull Request - State: closed - Opened by sir-sigurd 3 months ago

#3950 - Move Listing's pagination to the bottom

Pull Request - State: closed - Opened by fiskus 3 months ago - 1 comment

#3949 - Athena: Pre-select first catalog and database

Pull Request - State: closed - Opened by fiskus 3 months ago

#3948 - Fix quilt3 test that fails when there are default creds in .aws/credentials

Pull Request - State: closed - Opened by sir-sigurd 3 months ago

#3947 - Igv: sign `compressedIndexURL`

Pull Request - State: closed - Opened by fiskus 3 months ago

#3946 - Add `"text"` type for quilt_summarize.json

Pull Request - State: closed - Opened by fiskus 3 months ago - 3 comments

#3945 - Quilt3 v6.0.0a2

Pull Request - State: closed - Opened by sir-sigurd 3 months ago - 1 comment

#3944 - Detect unversioned buckets

Issue - State: open - Opened by drernie 3 months ago

#3943 - Quilt3 search

Pull Request - State: closed - Opened by drernie 3 months ago - 4 comments

#3942 - Bump idna from 3.6 to 3.7 in /lambdas/pkgpush

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago
Labels: js dependencies, python

#3942 - Bump idna from 3.6 to 3.7 in /lambdas/pkgpush

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago
Labels: js dependencies, python

#3941 - Bump idna from 3.6 to 3.7 in /lambdas/s3hash

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago
Labels: js dependencies, python

#3941 - Bump idna from 3.6 to 3.7 in /lambdas/s3hash

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago
Labels: js dependencies, python

#3940 - Bump idna from 3.4 to 3.7 in /lambdas/thumbnail

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago - 1 comment
Labels: js dependencies, python

#3940 - Bump idna from 3.4 to 3.7 in /lambdas/thumbnail

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago - 1 comment
Labels: js dependencies, python

#3939 - Bump idna from 3.3 to 3.7 in /lambdas/status_reports

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago
Labels: js dependencies, python

#3939 - Bump idna from 3.3 to 3.7 in /lambdas/status_reports

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago
Labels: js dependencies, python

#3938 - Bump idna from 3.3 to 3.7 in /testdocs

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago - 1 comment
Labels: js dependencies, python

GitHub / quiltdata/quilt issues and pull requests