quantumjot/cellx issues and pull requests

#68 - Add float32 test

Pull Request - State: closed - Opened by quantumjot almost 2 years ago

#68 - Add float32 test

Pull Request - State: closed - Opened by quantumjot almost 2 years ago

#67 - Allow float32 as TFRecord format

Pull Request - State: closed - Opened by quantumjot almost 2 years ago

#67 - Allow float32 as TFRecord format

Pull Request - State: closed - Opened by quantumjot almost 2 years ago

#66 - modified image boundary augmentation

Pull Request - State: closed - Opened by chris-soelistyo about 2 years ago

#66 - modified image boundary augmentation

Pull Request - State: closed - Opened by chris-soelistyo about 2 years ago

#65 - adapt the image boundary augmentation for tensorflow

Issue - State: closed - Opened by chris-soelistyo about 2 years ago - 1 comment

#65 - adapt the image boundary augmentation for tensorflow

Issue - State: closed - Opened by chris-soelistyo about 2 years ago - 1 comment

#64 - added new augmentations

Pull Request - State: closed - Opened by chris-soelistyo about 2 years ago
Labels: feature

#64 - added new augmentations

Pull Request - State: closed - Opened by chris-soelistyo about 2 years ago
Labels: feature

#63 - Add new image augmentations: noise, rotation, translation

Issue - State: closed - Opened by chris-soelistyo about 2 years ago

#63 - Add new image augmentations: noise, rotation, translation

Issue - State: closed - Opened by chris-soelistyo about 2 years ago

#62 - add flow field

Pull Request - State: open - Opened by quantumjot almost 3 years ago
Labels: feature

#62 - add flow field

Pull Request - State: open - Opened by quantumjot almost 3 years ago
Labels: feature

#61 - Fix PosixPath error that occurs when running `build_dataset()`

Pull Request - State: closed - Opened by laureho almost 3 years ago - 2 comments

#61 - Fix PosixPath error that occurs when running `build_dataset()`

Pull Request - State: closed - Opened by laureho almost 3 years ago - 2 comments

#60 - update PCA tests to use multivariate normal dist

Pull Request - State: closed - Opened by quantumjot almost 3 years ago

#60 - update PCA tests to use multivariate normal dist

Pull Request - State: closed - Opened by quantumjot almost 3 years ago

#59 - update PCA batch tests

Pull Request - State: closed - Opened by quantumjot almost 3 years ago

#59 - update PCA batch tests

Pull Request - State: closed - Opened by quantumjot almost 3 years ago

#58 - Add extra dataset tests, fix list_tfrecord_files

Pull Request - State: closed - Opened by quantumjot almost 3 years ago
Labels: bug

#58 - Add extra dataset tests, fix list_tfrecord_files

Pull Request - State: closed - Opened by quantumjot almost 3 years ago
Labels: bug

#57 - bug in `list_tfrecord_files`

Issue - State: closed - Opened by quantumjot almost 3 years ago
Labels: bug

#57 - bug in `list_tfrecord_files`

Issue - State: closed - Opened by quantumjot almost 3 years ago
Labels: bug

#56 - clean up dataset dtypes, add tests

Pull Request - State: closed - Opened by quantumjot almost 3 years ago

#56 - clean up dataset dtypes, add tests

Pull Request - State: closed - Opened by quantumjot almost 3 years ago

#55 - allow different dtypes in dataset parsing

Pull Request - State: closed - Opened by quantumjot almost 3 years ago

#55 - allow different dtypes in dataset parsing

Pull Request - State: closed - Opened by quantumjot almost 3 years ago

#54 - add dataset test

Pull Request - State: closed - Opened by quantumjot almost 3 years ago

#54 - add dataset test

Pull Request - State: closed - Opened by quantumjot almost 3 years ago

#53 - add some tests for TFRecord datasets

Issue - State: open - Opened by quantumjot almost 3 years ago

#53 - add some tests for TFRecord datasets

Issue - State: open - Opened by quantumjot almost 3 years ago

#52 - Add functions to traverse TFRecords dataset

Pull Request - State: closed - Opened by KristinaUlicna almost 3 years ago - 2 comments

#52 - Add functions to traverse TFRecords dataset

Pull Request - State: closed - Opened by KristinaUlicna almost 3 years ago - 2 comments

#51 - add function to determine cardinality of tfrecord files

Issue - State: closed - Opened by quantumjot almost 3 years ago

#51 - add function to determine cardinality of tfrecord files

Issue - State: closed - Opened by quantumjot almost 3 years ago

#50 - fix saliency

Pull Request - State: closed - Opened by quantumjot almost 3 years ago

#50 - fix saliency

Pull Request - State: closed - Opened by quantumjot almost 3 years ago

#49 - Fix model loading 3

Pull Request - State: closed - Opened by quantumjot about 3 years ago - 1 comment

#49 - Fix model loading 3

Pull Request - State: closed - Opened by quantumjot about 3 years ago - 1 comment

#48 - set up RTD for this library

Issue - State: open - Opened by quantumjot about 3 years ago
Labels: documentation

#48 - set up RTD for this library

Issue - State: open - Opened by quantumjot about 3 years ago
Labels: documentation

#47 - add SerializationMixin to VAE and UNet and other custom models

Issue - State: open - Opened by quantumjot about 3 years ago
Labels: bug, feature

#47 - add SerializationMixin to VAE and UNet and other custom models

Issue - State: open - Opened by quantumjot about 3 years ago
Labels: bug, feature

#46 - add a test for proper model serialization

Pull Request - State: closed - Opened by quantumjot about 3 years ago - 1 comment

#45 - test custom model saving/loading

Issue - State: closed - Opened by quantumjot about 3 years ago
Labels: bug

#45 - test custom model saving/loading

Issue - State: closed - Opened by quantumjot about 3 years ago
Labels: bug

#44 - fix model serialization and add tests

Pull Request - State: closed - Opened by quantumjot about 3 years ago - 1 comment
Labels: bug

#44 - fix model serialization and add tests

Pull Request - State: closed - Opened by quantumjot about 3 years ago - 1 comment
Labels: bug

#43 - fix model loading

Issue - State: closed - Opened by quantumjot about 3 years ago
Labels: bug

#43 - fix model loading

Issue - State: closed - Opened by quantumjot about 3 years ago
Labels: bug

#42 - InfinitePaddedImage doesn't support loading of Dask Arrays

Issue - State: closed - Opened by KristinaUlicna about 3 years ago - 3 comments

#42 - InfinitePaddedImage doesn't support loading of Dask Arrays

Issue - State: closed - Opened by KristinaUlicna about 3 years ago - 3 comments

#41 - fix encoder layer loading and changed isort precommit

Pull Request - State: closed - Opened by chris-soelistyo about 3 years ago - 4 comments
Labels: bug, feature

#41 - fix encoder layer loading and changed isort precommit

Pull Request - State: closed - Opened by chris-soelistyo about 3 years ago - 4 comments
Labels: bug, feature

#40 - add cellx-predict components

Pull Request - State: closed - Opened by quantumjot about 3 years ago
Labels: feature

#40 - add cellx-predict components

Pull Request - State: closed - Opened by quantumjot about 3 years ago
Labels: feature

#39 - add code for cellx-predict library

Issue - State: closed - Opened by quantumjot about 3 years ago

#39 - add code for cellx-predict library

Issue - State: closed - Opened by quantumjot about 3 years ago

#38 - Created option to select a random image patch for manifold projection

Pull Request - State: closed - Opened by nthndy over 3 years ago

#38 - Created option to select a random image patch for manifold projection

Pull Request - State: closed - Opened by nthndy over 3 years ago

#37 - Update workflow to include code coverage

Pull Request - State: open - Opened by quantumjot over 3 years ago

#37 - Update workflow to include code coverage

Pull Request - State: open - Opened by quantumjot over 3 years ago

#36 - Add a ResNet50 feature extractor

Issue - State: open - Opened by quantumjot over 3 years ago - 1 comment

#35 - Make `extent` and `counts` properties of `ManifoldProjection` class

Issue - State: closed - Opened by quantumjot over 3 years ago - 1 comment

#35 - Make `extent` and `counts` properties of `ManifoldProjection` class

Issue - State: closed - Opened by quantumjot over 3 years ago - 1 comment

#34 - Fix manifold projection

Pull Request - State: closed - Opened by quantumjot over 3 years ago
Labels: bug, feature

#34 - Fix manifold projection

Pull Request - State: closed - Opened by quantumjot over 3 years ago
Labels: bug, feature

#33 - TF docker container uses Python 3.6

Issue - State: closed - Opened by quantumjot over 3 years ago - 1 comment

#33 - TF docker container uses Python 3.6

Issue - State: closed - Opened by quantumjot over 3 years ago - 1 comment

#32 - Reorganise layers

Pull Request - State: closed - Opened by quantumjot over 3 years ago

#32 - Reorganise layers

Pull Request - State: closed - Opened by quantumjot over 3 years ago

#31 - Rename this library

Issue - State: open - Opened by quantumjot almost 4 years ago - 4 comments

#31 - Rename this library

Issue - State: open - Opened by quantumjot almost 4 years ago - 4 comments

#30 - Modify read_annotations for single zip files

Pull Request - State: closed - Opened by KristinaUlicna almost 4 years ago - 1 comment
Labels: feature

#30 - Modify read_annotations for single zip files

Pull Request - State: closed - Opened by KristinaUlicna almost 4 years ago - 1 comment
Labels: feature

#29 - Function read_annotations to read only a specified zipfile

Issue - State: closed - Opened by KristinaUlicna almost 4 years ago - 2 comments

#29 - Function read_annotations to read only a specified zipfile

Issue - State: closed - Opened by KristinaUlicna almost 4 years ago - 2 comments

#28 - [WIP] Prototype API

Pull Request - State: open - Opened by quantumjot almost 4 years ago
Labels: feature

#28 - [WIP] Prototype API

Pull Request - State: open - Opened by quantumjot almost 4 years ago
Labels: feature

#27 - added use_flagged to read_annotations

Pull Request - State: closed - Opened by quantumjot almost 4 years ago
Labels: feature

#27 - added use_flagged to read_annotations

Pull Request - State: closed - Opened by quantumjot almost 4 years ago
Labels: feature

#26 - Added annotation file reader

Pull Request - State: closed - Opened by quantumjot almost 4 years ago
Labels: feature

#26 - Added annotation file reader

Pull Request - State: closed - Opened by quantumjot almost 4 years ago
Labels: feature

#25 - Add heatmap to tools/projection.py

Issue - State: closed - Opened by laureho about 4 years ago - 2 comments

#25 - Add heatmap to tools/projection.py

Issue - State: closed - Opened by laureho about 4 years ago - 2 comments

#24 - Add a fast glimpse extractor

Issue - State: open - Opened by quantumjot about 4 years ago - 2 comments
Labels: feature

#24 - Add a fast glimpse extractor

Issue - State: open - Opened by quantumjot about 4 years ago - 2 comments
Labels: feature

#23 - Add TFRecord dataset utils

Pull Request - State: closed - Opened by quantumjot about 4 years ago
Labels: feature

#23 - Add TFRecord dataset utils

Pull Request - State: closed - Opened by quantumjot about 4 years ago
Labels: feature

#22 - Allow custom up and downsampling layers in U-net

Issue - State: open - Opened by quantumjot about 4 years ago
Labels: bug, feature

#21 - Define `self._image_files` to store image filenames

Issue - State: closed - Opened by laureho about 4 years ago - 1 comment
Labels: bug

#20 - Augmentation docstrings could use improvement

Issue - State: closed - Opened by quantumjot about 4 years ago - 1 comment
Labels: documentation

#19 - Add generic U-net

Pull Request - State: closed - Opened by quantumjot about 4 years ago
Labels: feature

#18 - Fix #14: change manifold indexing

Pull Request - State: closed - Opened by laureho about 4 years ago - 2 comments

#17 - Update ManifoldProjection2D's docstrings

Pull Request - State: closed - Opened by laureho about 4 years ago

#16 - Improve ManifoldProjection2D's docstrings

Pull Request - State: closed - Opened by laureho about 4 years ago - 1 comment

#15 - Manifold projection only uses three channel (RGB) images currently

Issue - State: closed - Opened by quantumjot about 4 years ago - 1 comment
Labels: bug

#14 - Manifold projection doesn't index components correctly

Issue - State: closed - Opened by quantumjot about 4 years ago
Labels: bug

#13 - Docstrings for manifold projection

Issue - State: closed - Opened by quantumjot over 4 years ago - 2 comments
Labels: documentation

GitHub / quantumjot/cellx issues and pull requests