Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / quadbio/Pando issues and pull requests
#64 - model overfitting
Issue -
State: open - Opened by tkisss 5 months ago
#64 - model overfitting
Issue -
State: open - Opened by tkisss 5 months ago
#63 - Pando output - enhancer regions
Issue -
State: open - Opened by valentinaOpazo 5 months ago
#63 - Pando output - enhancer regions
Issue -
State: open - Opened by valentinaOpazo 5 months ago
#62 - regions parameter in initate_grn()
Issue -
State: open - Opened by sylestiel 6 months ago
- 4 comments
#62 - regions parameter in initate_grn()
Issue -
State: open - Opened by sylestiel 6 months ago
- 4 comments
#61 - Question: where to find tutorial seurat object dataset
Issue -
State: closed - Opened by jennymoon90 6 months ago
- 1 comment
#61 - Question: where to find tutorial seurat object dataset
Issue -
State: closed - Opened by jennymoon90 6 months ago
- 1 comment
#60 - a subgraph of the GRN specifying only one "target gene"
Issue -
State: closed - Opened by m03077yhtnt 7 months ago
- 1 comment
#60 - a subgraph of the GRN specifying only one "target gene"
Issue -
State: closed - Opened by m03077yhtnt 7 months ago
- 1 comment
#59 - Question on grn output: how to interpret the grn output where there are list of TFs and their target genes?
Issue -
State: open - Opened by yojetsharma 7 months ago
- 1 comment
#59 - Question on grn output: how to interpret the grn output where there are list of TFs and their target genes?
Issue -
State: open - Opened by yojetsharma 7 months ago
- 1 comment
#58 - Error in as_igraph_vs(graph, from) : Invalid vertex names while running plot_tf_network
Issue -
State: open - Opened by yojetsharma 7 months ago
- 1 comment
#58 - Error in as_igraph_vs(graph, from) : Invalid vertex names while running plot_tf_network
Issue -
State: open - Opened by yojetsharma 7 months ago
- 1 comment
#57 - Error with "method for 'DefaultAssay<-' applied to an object of class "GRNData"
Issue -
State: closed - Opened by yojetsharma 7 months ago
- 5 comments
#57 - Error with "method for 'DefaultAssay<-' applied to an object of class "GRNData"
Issue -
State: closed - Opened by yojetsharma 7 months ago
- 5 comments
#56 - plot_network_graph() only plot target genes
Issue -
State: open - Opened by zhenzuo2 8 months ago
- 1 comment
#56 - plot_network_graph() only plot target genes
Issue -
State: open - Opened by zhenzuo2 8 months ago
- 1 comment
#55 - Questions on integration and interpretation
Issue -
State: closed - Opened by JABioinf 8 months ago
- 3 comments
#55 - Questions on integration and interpretation
Issue -
State: closed - Opened by JABioinf 8 months ago
- 3 comments
#54 - issue in initiate_grn- invalid class "Seurat" object: 'assays' must be a named list
Issue -
State: closed - Opened by heteyszabolcs 8 months ago
- 4 comments
#54 - issue in initiate_grn- invalid class "Seurat" object: 'assays' must be a named list
Issue -
State: closed - Opened by heteyszabolcs 8 months ago
- 4 comments
#53 - Error in find_motifs with invalid version slot in SeuratPlus object
Issue -
State: open - Opened by jsacco1 9 months ago
- 5 comments
#53 - Error in find_motifs with invalid version slot in SeuratPlus object
Issue -
State: open - Opened by jsacco1 9 months ago
- 5 comments
#52 - Advice about a dataset with conditions
Issue -
State: open - Opened by AmelZulji 10 months ago
- 4 comments
#52 - Advice about a dataset with conditions
Issue -
State: open - Opened by AmelZulji 10 months ago
- 4 comments
#51 - Error with findOverlaps function while initiating grn
Issue -
State: open - Opened by niklasbinder 10 months ago
#51 - Error with findOverlaps function while initiating grn
Issue -
State: open - Opened by niklasbinder 10 months ago
#50 - infer_grn errors
Issue -
State: open - Opened by bjstewart1 11 months ago
#50 - infer_grn errors
Issue -
State: open - Opened by bjstewart1 11 months ago
#49 - Question: celltype-specific GRN
Issue -
State: closed - Opened by tkisss 11 months ago
- 2 comments
#49 - Question: celltype-specific GRN
Issue -
State: closed - Opened by tkisss 11 months ago
- 2 comments
#48 - input data normalisation
Issue -
State: open - Opened by bjstewart1 11 months ago
- 7 comments
#48 - input data normalisation
Issue -
State: open - Opened by bjstewart1 11 months ago
- 7 comments
#47 - Where is the Sample Data from Vignettes?
Issue -
State: closed - Opened by TeodoraTockovska 12 months ago
- 1 comment
#46 - `coef()` results was changed
Issue -
State: closed - Opened by mkojima123 about 1 year ago
- 2 comments
#46 - `coef()` results was changed
Issue -
State: closed - Opened by mkojima123 about 1 year ago
- 2 comments
#45 - where to download the tutorial data
Issue -
State: closed - Opened by GouQiao about 1 year ago
#44 - error in initiate_grn()
Issue -
State: closed - Opened by GouQiao about 1 year ago
- 2 comments
#44 - error in initiate_grn()
Issue -
State: closed - Opened by GouQiao about 1 year ago
- 2 comments
#43 - Run pando on dataset with different conditions
Issue -
State: closed - Opened by JoreVW about 1 year ago
- 1 comment
#43 - Run pando on dataset with different conditions
Issue -
State: closed - Opened by JoreVW about 1 year ago
- 1 comment
#42 - Error:infer_grn(),
Issue -
State: open - Opened by wxpbioinfo over 1 year ago
- 4 comments
#42 - Error:infer_grn(),
Issue -
State: open - Opened by wxpbioinfo over 1 year ago
- 4 comments
#41 - Update website link in the readme
Pull Request -
State: closed - Opened by Marius1311 over 1 year ago
#41 - Update website link in the readme
Pull Request -
State: closed - Opened by Marius1311 over 1 year ago
#40 - initiate_grn error
Issue -
State: closed - Opened by zhijunyuu over 1 year ago
- 3 comments
#40 - initiate_grn error
Issue -
State: closed - Opened by zhijunyuu over 1 year ago
- 3 comments
#39 - running time of Pando
Issue -
State: closed - Opened by crystal0721 over 1 year ago
- 1 comment
#39 - running time of Pando
Issue -
State: closed - Opened by crystal0721 over 1 year ago
- 1 comment
#38 - scRNA data only
Issue -
State: closed - Opened by dimurali93 over 1 year ago
- 1 comment
#38 - scRNA data only
Issue -
State: closed - Opened by dimurali93 over 1 year ago
- 1 comment
#37 - infer_grn() parallelization cores not delivering results
Issue -
State: closed - Opened by stran94 over 1 year ago
- 1 comment
#37 - infer_grn() parallelization cores not delivering results
Issue -
State: closed - Opened by stran94 over 1 year ago
- 1 comment
#36 - ERROR in GRN inference
Issue -
State: open - Opened by Usamahussein551980 over 1 year ago
- 2 comments
#36 - ERROR in GRN inference
Issue -
State: open - Opened by Usamahussein551980 over 1 year ago
- 2 comments
#35 - Question: Can Pando be used on an unpaired multiomic dataset?
Issue -
State: closed - Opened by mitchTwoTimes over 1 year ago
- 1 comment
#34 - I need your help
Issue -
State: closed - Opened by Usamahussein551980 over 1 year ago
- 3 comments
#33 - Question: feature selection for network plots, UMAP embedding
Issue -
State: closed - Opened by kstrotjohann over 1 year ago
- 1 comment
#33 - Question: feature selection for network plots, UMAP embedding
Issue -
State: closed - Opened by kstrotjohann over 1 year ago
- 1 comment
#32 - Error in as.igraph.vs(graph, from) : Invalid vertex names
Issue -
State: open - Opened by mitchTwoTimes over 1 year ago
- 2 comments
#32 - Error in as.igraph.vs(graph, from) : Invalid vertex names
Issue -
State: open - Opened by mitchTwoTimes over 1 year ago
- 2 comments
#31 - Question: How to customize GRN plot with metadata
Issue -
State: closed - Opened by mitchTwoTimes over 1 year ago
- 1 comment
#30 - Pando Not Returning Expected GRNs and Limiting Target Genes to a Handful - Possibility of Problem with Mouse Genome?
Issue -
State: open - Opened by Sandman-1 over 1 year ago
- 24 comments
#30 - Pando Not Returning Expected GRNs and Limiting Target Genes to a Handful - Possibility of Problem with Mouse Genome?
Issue -
State: open - Opened by Sandman-1 over 1 year ago
- 24 comments
#29 - Error in infer_grn()
Issue -
State: open - Opened by TerezaClarence over 1 year ago
- 5 comments
#29 - Error in infer_grn()
Issue -
State: open - Opened by TerezaClarence over 1 year ago
- 5 comments
#28 - Direction of regulation / highlighting TFs in the network plot
Issue -
State: closed - Opened by kstrotjohann over 1 year ago
- 2 comments
#28 - Direction of regulation / highlighting TFs in the network plot
Issue -
State: closed - Opened by kstrotjohann over 1 year ago
- 2 comments
#27 - phastCons for Mus musculus
Issue -
State: closed - Opened by sylestiel over 1 year ago
- 3 comments
#27 - phastCons for Mus musculus
Issue -
State: closed - Opened by sylestiel over 1 year ago
- 3 comments
#26 - Infer_grn Function Returning Error
Issue -
State: closed - Opened by Sandman-1 over 1 year ago
- 21 comments
#26 - Infer_grn Function Returning Error
Issue -
State: closed - Opened by Sandman-1 over 1 year ago
- 21 comments
#25 - Update grn.R
Pull Request -
State: open - Opened by Sandman-1 over 1 year ago
#25 - Update grn.R
Pull Request -
State: open - Opened by Sandman-1 over 1 year ago
#24 - Update grn.R
Pull Request -
State: open - Opened by Sandman-1 over 1 year ago
- 1 comment
#24 - Update grn.R
Pull Request -
State: open - Opened by Sandman-1 over 1 year ago
- 1 comment
#23 - Error with plot_tf_network
Issue -
State: closed - Opened by Ping-lin14 almost 2 years ago
- 1 comment
#23 - Error with plot_tf_network
Issue -
State: closed - Opened by Ping-lin14 almost 2 years ago
- 1 comment
#22 - normalization
Issue -
State: closed - Opened by xujiahao778899 almost 2 years ago
#22 - normalization
Issue -
State: closed - Opened by xujiahao778899 almost 2 years ago
#21 - Question on custom motif sets
Issue -
State: closed - Opened by DanielYuhangLi almost 2 years ago
- 2 comments
Labels: question
#21 - Question on custom motif sets
Issue -
State: closed - Opened by DanielYuhangLi almost 2 years ago
- 2 comments
Labels: question
#20 - The model for repressor
Issue -
State: closed - Opened by yamajackr almost 2 years ago
- 1 comment
Labels: enhancement, question
#20 - The model for repressor
Issue -
State: closed - Opened by yamajackr almost 2 years ago
- 1 comment
Labels: enhancement, question
#19 - Module activity between branches (and over pseudotime)
Issue -
State: closed - Opened by anderswe almost 2 years ago
- 6 comments
Labels: question
#19 - Module activity between branches (and over pseudotime)
Issue -
State: closed - Opened by anderswe almost 2 years ago
- 6 comments
Labels: question
#18 - Error "attempt to select less than one element in integerOneIndex"
Issue -
State: closed - Opened by lingfeiwang almost 2 years ago
- 13 comments
#18 - Error "attempt to select less than one element in integerOneIndex"
Issue -
State: closed - Opened by lingfeiwang almost 2 years ago
- 13 comments
#17 - "not-yet-implemented 'Matrix[<-' method"
Issue -
State: closed - Opened by DanielYuhangLi almost 2 years ago
- 3 comments
Labels: bug
#17 - "not-yet-implemented 'Matrix[<-' method"
Issue -
State: closed - Opened by DanielYuhangLi almost 2 years ago
- 3 comments
Labels: bug
#16 - Installation failure due to Matrix.utils dependency
Issue -
State: closed - Opened by vkartha almost 2 years ago
- 4 comments
Labels: bug
#16 - Installation failure due to Matrix.utils dependency
Issue -
State: closed - Opened by vkartha almost 2 years ago
- 4 comments
Labels: bug
#15 - Test data/ vignette data accessibility
Issue -
State: closed - Opened by dimurali93 almost 2 years ago
- 1 comment
Labels: documentation, question
#15 - Test data/ vignette data accessibility
Issue -
State: closed - Opened by dimurali93 almost 2 years ago
- 1 comment
Labels: documentation, question
#14 - badge fix
Pull Request -
State: closed - Opened by FrickTobias almost 2 years ago
- 1 comment
#14 - badge fix
Pull Request -
State: closed - Opened by FrickTobias almost 2 years ago
- 1 comment
#13 - badge fix
Pull Request -
State: closed - Opened by FrickTobias almost 2 years ago
#13 - badge fix
Pull Request -
State: closed - Opened by FrickTobias almost 2 years ago
#12 - plot_module_metrics(muo_data)
Issue -
State: closed - Opened by zhenzuo2 almost 2 years ago
- 1 comment
Labels: bug