Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / qbicsoftware/etl-scripts issues and pull requests

#132 - Sync dev branch

Pull Request - State: closed - Opened by luiskuhn about 1 year ago

#130 - fix/add TODOs for known issues

Pull Request - State: open - Opened by wow-such-code about 1 year ago

#129 - deploy omero56-patch

Pull Request - State: closed - Opened by luiskuhn about 1 year ago

#128 - Patch: upgrade-omero56

Pull Request - State: closed - Opened by luiskuhn about 1 year ago

#127 - prepare next version for deployment

Pull Request - State: closed - Opened by wow-such-code about 1 year ago

#126 - add information for pacbio and preconverted mass spec data

Pull Request - State: closed - Opened by wow-such-code about 1 year ago

#125 - Register Pac Bio data

Pull Request - State: closed - Opened by wow-such-code about 1 year ago

#124 - Check for valid OMERO ID value

Issue - State: open - Opened by luiskuhn about 1 year ago

#123 - Prepare release to production

Pull Request - State: closed - Opened by wow-such-code about 1 year ago

#122 - fix issue for .d folders and missing accession

Pull Request - State: closed - Opened by wow-such-code about 1 year ago

#121 - prepare for production

Pull Request - State: closed - Opened by wow-such-code about 1 year ago

#120 - ETL upgrade (omero56 update/ required ETL features)

Pull Request - State: closed - Opened by luiskuhn about 1 year ago - 1 comment

#119 - sync dev into omero56

Pull Request - State: closed - Opened by luiskuhn about 1 year ago

#117 - handle new nanopore structure with pod5 and some optional folders

Pull Request - State: closed - Opened by wow-such-code over 1 year ago - 1 comment

#116 - sync master

Pull Request - State: closed - Opened by luiskuhn over 1 year ago

#115 - next release

Pull Request - State: closed - Opened by wow-such-code over 1 year ago

#113 - Sync dev

Pull Request - State: closed - Opened by luiskuhn over 1 year ago

#112 - prepare release

Pull Request - State: closed - Opened by wow-such-code almost 2 years ago

#111 - add error handling via email for attachment upload

Pull Request - State: closed - Opened by wow-such-code almost 2 years ago

#110 - Hotfix/imgag fastq vcf processing

Pull Request - State: closed - Opened by wow-such-code almost 2 years ago

#109 - Feature/nanopore parser v4

Pull Request - State: closed - Opened by wow-such-code about 2 years ago

#108 - prepare next version

Pull Request - State: closed - Opened by wow-such-code about 2 years ago

#107 - Fix/omero issues

Pull Request - State: closed - Opened by wow-such-code about 2 years ago - 1 comment

#106 - handle extra basecalling folder

Pull Request - State: closed - Opened by wow-such-code about 2 years ago

#105 - Prepare release

Pull Request - State: closed - Opened by sven1103 over 2 years ago

#104 - remove incoming data if referenced sample is already registered

Pull Request - State: closed - Opened by wow-such-code over 2 years ago - 1 comment

#103 - better check for existing samples

Pull Request - State: closed - Opened by wow-such-code over 2 years ago

#102 - prepare new release

Pull Request - State: closed - Opened by wow-such-code over 2 years ago

#101 - Feature/use sample tracking v2

Pull Request - State: closed - Opened by wow-such-code over 2 years ago

#100 - Hotfix/dm 456 fix vcf registration

Pull Request - State: closed - Opened by wow-such-code over 2 years ago - 1 comment

#99 - return correct regex group to determine experiment number

Pull Request - State: closed - Opened by wow-such-code over 2 years ago

#98 - fix wiff dropbox issue

Pull Request - State: closed - Opened by wow-such-code over 2 years ago

#97 - RegEx to find experiment number fails, if project or space contain numbers

Issue - State: closed - Opened by wow-such-code over 2 years ago
Labels: bug

#96 - Prepare release 1.11.0

Pull Request - State: closed - Opened by wow-such-code almost 3 years ago

#95 - remove some log files dependent on origin lab

Pull Request - State: closed - Opened by wow-such-code almost 3 years ago - 1 comment

#92 - Sync with release 1.10.0

Pull Request - State: closed - Opened by sven1103 over 3 years ago

#91 - Release 1.10.0

Pull Request - State: closed - Opened by sven1103 over 3 years ago

#90 - Allow for sequencing lanes

Pull Request - State: closed - Opened by sven1103 over 3 years ago - 1 comment

#89 - Add ETL logic for MTB project data outside of the routine QUK17 project

Pull Request - State: closed - Opened by sven1103 over 3 years ago

#88 - Support lanes in MTB dropbox

Issue - State: closed - Opened by sven1103 over 3 years ago - 2 comments

#87 - Release 1.9.0 sync

Pull Request - State: closed - Opened by sven1103 over 3 years ago

#86 - Release 1.9.0

Pull Request - State: closed - Opened by sven1103 over 3 years ago - 1 comment

#85 - New ETL written in Java

Pull Request - State: closed - Opened by sven1103 over 3 years ago

#83 - added metadata validation

Pull Request - State: closed - Opened by luiskuhn over 3 years ago

#82 - Release/1.8.0

Pull Request - State: closed - Opened by wow-such-code over 3 years ago

#81 - Resolve conflicts for master

Pull Request - State: closed - Opened by wow-such-code over 3 years ago

#80 - Sync master and dev

Pull Request - State: closed - Opened by luiskuhn over 3 years ago - 2 comments

#79 - Provide java example dropbox definition

Pull Request - State: closed - Opened by sven1103 almost 4 years ago

#78 - Release/1.7.0

Pull Request - State: closed - Opened by wow-such-code almost 4 years ago

#77 - Feature/omero prep release v1

Pull Request - State: closed - Opened by luiskuhn almost 4 years ago - 1 comment

#76 - Feature/omero openbis metadata

Pull Request - State: closed - Opened by wow-such-code almost 4 years ago - 5 comments

#75 - MS raw data conversion ETL script references unused json file

Issue - State: open - Opened by wow-such-code almost 4 years ago - 1 comment
Labels: enhancement, question

#74 - Add ER models to the Readme/documentation

Issue - State: open - Opened by wow-such-code almost 4 years ago
Labels: enhancement

#73 - TSV parser object needed (with json schema)

Issue - State: open - Opened by luiskuhn almost 4 years ago

#72 - Documentation/convert ms

Pull Request - State: closed - Opened by wow-such-code almost 4 years ago - 1 comment

#71 - Imaging data registration: provide key-value metadata ingestion to omero

Pull Request - State: closed - Opened by luiskuhn almost 4 years ago - 4 comments

#70 - Add description for HLA typing data

Pull Request - State: closed - Opened by jenniferboedker almost 4 years ago - 3 comments

#69 - Correct fastq dropbox docs

Pull Request - State: closed - Opened by sven1103 almost 4 years ago

#68 - Add documentation for NGS data with metadata

Pull Request - State: closed - Opened by sven1103 almost 4 years ago - 1 comment

#67 - adapt attachment script to actual running version

Pull Request - State: closed - Opened by wow-such-code almost 4 years ago

#66 - Documentation/fastq

Pull Request - State: closed - Opened by wow-such-code almost 4 years ago - 3 comments

#65 - Documentation/attachments

Pull Request - State: closed - Opened by wow-such-code almost 4 years ago - 1 comment

#64 - Provide an ETL that registers pipeline result data

Issue - State: closed - Opened by sven1103 about 4 years ago - 2 comments

#63 - Registration of single cell sequencing results

Issue - State: open - Opened by sven1103 about 4 years ago

#62 - Provide data-structure requirements for every datatype

Issue - State: open - Opened by sven1103 about 4 years ago

#61 - Sync development with master

Pull Request - State: closed - Opened by sven1103 about 4 years ago

#60 - Hotfix 1.5.1

Pull Request - State: closed - Opened by sven1103 about 4 years ago

#59 - Hotfix/retry sample tracking

Pull Request - State: closed - Opened by wow-such-code about 4 years ago - 1 comment

#58 - Hotfix/wf sample fetching

Pull Request - State: closed - Opened by wow-such-code about 4 years ago - 1 comment

#57 - Workflow registration ETL scripts fail if samples are not indexed yet

Issue - State: open - Opened by wow-such-code about 4 years ago - 1 comment
Labels: bug

#56 - Retry sample tracking update

Issue - State: closed - Opened by wow-such-code about 4 years ago - 2 comments
Labels: enhancement

#55 - convert experiment id to string for v3 objects

Pull Request - State: closed - Opened by wow-such-code over 4 years ago

#54 - rename data folder for pooled data

Pull Request - State: closed - Opened by wow-such-code over 4 years ago

#53 - Release/1.5.0

Pull Request - State: closed - Opened by sven1103 over 4 years ago

#52 - Feature/checksum maintenance

Pull Request - State: closed - Opened by sven1103 over 4 years ago

#51 - make imgag dropbox raise exception if unknown data types arrive

Pull Request - State: closed - Opened by wow-such-code over 4 years ago

#50 - Feature/checksum maintenance

Pull Request - State: closed - Opened by sven1103 over 4 years ago

#49 - Fix dangerous parsing of Omero importer return values

Issue - State: open - Opened by wow-such-code over 4 years ago - 1 comment
Labels: enhancement

#48 - Release/1.4.0

Pull Request - State: closed - Opened by sven1103 over 4 years ago

#47 - Feature/restructure code

Pull Request - State: closed - Opened by sven1103 over 4 years ago

#46 - Release/1.4.0

Pull Request - State: closed - Opened by sven1103 over 4 years ago - 1 comment

#45 - Refactor code

Pull Request - State: closed - Opened by sven1103 over 4 years ago

#44 - Update development with hot fix and changelog

Pull Request - State: closed - Opened by wow-such-code over 4 years ago

#43 - Register unclassified nanopore data at experiment level

Pull Request - State: closed - Opened by wow-such-code over 4 years ago

#42 - register unclassified pooling data at experiment level

Pull Request - State: closed - Opened by wow-such-code over 4 years ago - 1 comment

#41 - prepare further omero imaging dropbox development

Pull Request - State: closed - Opened by wow-such-code over 4 years ago

#39 - try to find existing ms sample in case of replicate data

Pull Request - State: closed - Opened by wow-such-code over 4 years ago

#38 - Prepare release 1.3

Pull Request - State: closed - Opened by sven1103 over 4 years ago

#37 - prepare latest version of nanopore registration script

Pull Request - State: closed - Opened by wow-such-code over 4 years ago - 1 comment

#36 - Replace file opening with `with open() as`

Pull Request - State: closed - Opened by KochTobi over 4 years ago - 1 comment

#35 - handle checksums

Pull Request - State: closed - Opened by wow-such-code over 4 years ago

#31 - this aint right, use absolute path

Issue - State: closed - Opened by wow-such-code almost 5 years ago

#29 - removed too much...

Pull Request - State: closed - Opened by wow-such-code almost 5 years ago