pyxem/pyxem issues and pull requests

#927 - Release 0.15.1

Issue - State: closed - Opened by CSSFrancis over 1 year ago - 12 comments

#926 - Reversing Vectors for VDF Creation

Pull Request - State: closed - Opened by CSSFrancis over 1 year ago - 1 comment

#925 - Template matching Euler angle reference frame

Issue - State: closed - Opened by rbjorge over 1 year ago - 10 comments
Labels: documentation

#924 - Updating and correcting Zenodo

Pull Request - State: closed - Opened by pc494 almost 2 years ago - 6 comments

#923 - Zenodo has not updated to 0.15.0

Issue - State: closed - Opened by pc494 almost 2 years ago - 5 comments
Labels: dev

#922 - Non-Ridgid Registration of 5-D STEM data

Issue - State: open - Opened by CSSFrancis almost 2 years ago - 2 comments
Labels: won't fix yet

#921 - Fix dtype mask in watershed with scikit-image 0.21.rc1

Pull Request - State: closed - Opened by ericpre almost 2 years ago - 7 comments
Labels: bug

#920 - Add relevant parties to the conda-feedstock

Issue - State: closed - Opened by pc494 almost 2 years ago - 6 comments
Labels: dev

#919 - Trouble with installation: "The handshake operation timed out"

Issue - State: closed - Opened by xtli7687 almost 2 years ago - 4 comments
Labels: question

#918 - Fix Bugs related to notebook workflows

Pull Request - State: closed - Opened by CSSFrancis almost 2 years ago - 7 comments

#917 - Pre-Release Actions

Pull Request - State: closed - Opened by CSSFrancis almost 2 years ago - 4 comments
Labels: dev

#916 - Format Python code with psf/black push

Pull Request - State: closed - Opened by github-actions[bot] almost 2 years ago

#915 - Format Python code with psf/black push

Pull Request - State: closed - Opened by github-actions[bot] almost 2 years ago
Labels: dev

#914 - CI: Added action to create an auto PR that applies black to the main …

Pull Request - State: closed - Opened by CSSFrancis almost 2 years ago - 3 comments
Labels: dev

#913 - Format Python code with psf/black push

Pull Request - State: closed - Opened by github-actions[bot] almost 2 years ago - 1 comment

#912 - Auto black pr

Pull Request - State: closed - Opened by CSSFrancis almost 2 years ago

#911 - Auto black pr

Pull Request - State: closed - Opened by CSSFrancis almost 2 years ago

#910 - Auto black

Pull Request - State: closed - Opened by CSSFrancis almost 2 years ago - 2 comments

#909 - Formatting: Automatically run black and create PR to fix code.

Pull Request - State: closed - Opened by CSSFrancis almost 2 years ago - 7 comments

#908 - Update CI with test run of with minimal dep. versions ++

Pull Request - State: closed - Opened by hakonanes almost 2 years ago - 7 comments
Labels: dev

#907 - NewFeature: Added the ability to pass kwargs to phase_cross_correlation

Pull Request - State: closed - Opened by CSSFrancis almost 2 years ago - 2 comments
Labels: enhancement

#906 - BugFix: Fixed changes related to skimage 0.20 release

Pull Request - State: closed - Opened by CSSFrancis almost 2 years ago - 4 comments

#905 - fixed orientation bug in index_dataset_with_template_rotation function

Pull Request - State: closed - Opened by torit493 almost 2 years ago - 17 comments
Labels: bug

#904 - Error/failure with Scikit-image 0.20.0?

Issue - State: closed - Opened by ericpre almost 2 years ago
Labels: 0.15

#903 - Housekeeping (copyright, github templates, master/main)

Pull Request - State: closed - Opened by pc494 almost 2 years ago - 3 comments

#902 - Presenting at M&M 2023

Issue - State: closed - Opened by CSSFrancis almost 2 years ago - 7 comments
Labels: discussion, dev

#901 - Problem with Calibration

Issue - State: closed - Opened by Psiche91 almost 2 years ago - 5 comments
Labels: question

#900 - New signal class and tools for in-situ 4D-STEM data analysis

Pull Request - State: closed - Opened by SyHuang19 about 2 years ago - 5 comments

#899 - Refactor Vector Orientation Mapping Code

Issue - State: open - Opened by CSSFrancis about 2 years ago - 19 comments
Labels: enhancement, discussion, feature suggestion

#898 - Merging Selected Commits from Release next major

Pull Request - State: closed - Opened by CSSFrancis about 2 years ago - 3 comments

#897 - Merging RNM into Main

Pull Request - State: closed - Opened by CSSFrancis about 2 years ago - 1 comment

#896 - [deletion candidate] Remove .mib loader

Issue - State: closed - Opened by CSSFrancis about 2 years ago - 4 comments
Labels: deletion-candidate

#895 - Bugfix for Strain Mapping Code

Pull Request - State: closed - Opened by CSSFrancis about 2 years ago - 3 comments
Labels: 0.15

#894 - [deletion candidate] investigate_dog_background_removal_interactive

Issue - State: closed - Opened by pc494 about 2 years ago - 4 comments
Labels: deletion-candidate

#893 - [maint] Addressing some small issues in the workflows

Pull Request - State: closed - Opened by pc494 about 2 years ago - 3 comments
Labels: dev, 0.15

#892 - Small Changes to the Strain Mapping Routine

Issue - State: closed - Opened by CSSFrancis about 2 years ago - 2 comments

#891 - Version 0.15 Release Tracker

Issue - State: closed - Opened by CSSFrancis about 2 years ago - 27 comments
Labels: dev

#890 - Writing a Paper Alongside 1.0.0 Release

Issue - State: open - Opened by CSSFrancis about 2 years ago - 13 comments
Labels: discussion

#889 - Deprecate Dask Tools

Pull Request - State: closed - Opened by CSSFrancis about 2 years ago - 5 comments

#888 - Update workflows with more suitable Python versions

Issue - State: closed - Opened by pc494 about 2 years ago
Labels: dev, easy_fix

#887 - Update the default branch to 'main'

Issue - State: closed - Opened by pc494 about 2 years ago - 3 comments
Labels: dev, easy_fix

#886 - Center direct beam refactor

Pull Request - State: closed - Opened by CSSFrancis about 2 years ago - 5 comments
Labels: 0.15

#879 - Method " dp.get_integrated_intensity(roi)" Not working properly after hyperspy update from 1.6.5 to 1.7.x

Issue - State: open - Opened by garrofederico over 2 years ago - 3 comments
Labels: bug, waiting on author

#876 - Use transpose() instead of deprecated set_signal_dimension()

Issue - State: closed - Opened by hakonanes over 2 years ago - 3 comments
Labels: bug

#872 - Diffraction Vectors Overhaul

Issue - State: open - Opened by CSSFrancis over 2 years ago
Labels: enhancement, status: WIP, feature suggestion

#867 - Implement Logging in pyxem

Issue - State: open - Opened by CSSFrancis over 2 years ago - 6 comments
Labels: enhancement, dev, won't fix yet

#866 - Different behaviour of "find_beam_offset_cross_correlation" after scikit-image 0.19.0

Issue - State: closed - Opened by PVacek over 2 years ago - 2 comments
Labels: bug, dev

#862 - load_mib fails on data without a flyback line

Issue - State: closed - Opened by JoonatanL over 2 years ago - 1 comment
Labels: bug, enhancement

#857 - Migrate MIB reader to LiberTEM reader

Issue - State: closed - Opened by uellue over 2 years ago - 5 comments
Labels: discussion

#853 - Issue with in-plane orientations from index_dataset_with_template_rotation function in indexation_utils

Issue - State: closed - Opened by torit493 over 2 years ago - 8 comments
Labels: question, 0.15

#847 - Update io_utils.py

Pull Request - State: closed - Opened by chrisallen80 over 2 years ago - 1 comment
Labels: status: stalled

#846 - .mib reshape failing for some 1 bit data

Issue - State: closed - Opened by chrisallen80 over 2 years ago - 1 comment
Labels: bug

#844 - Bugfix and improvement to get_template_cartesian_coordinates

Pull Request - State: open - Opened by emichr over 2 years ago - 6 comments
Labels: status: stalled

#841 - test failure with scikit-learn 1.1.0rc1

Issue - State: closed - Opened by ericpre over 2 years ago - 2 comments
Labels: tests

#840 - Ransac ellipse test fails sometimes

Issue - State: closed - Opened by magnunor over 2 years ago - 1 comment
Labels: bug, tests

#830 - Improving CalibrationGenerator

Issue - State: open - Opened by tinabe over 2 years ago
Labels: enhancement

#786 - Skimage dependency update

Issue - State: closed - Opened by CSSFrancis about 3 years ago - 8 comments
Labels: bug

#776 - Removing (some) Generators From PyXEM

Issue - State: open - Opened by CSSFrancis over 3 years ago - 4 comments
Labels: enhancement, discussion

#759 - Switch to new, improved, version of HyperSpy map function

Issue - State: closed - Opened by magnunor almost 4 years ago - 5 comments
Labels: dev

#758 - Deprecate old, duplicate functions

Issue - State: open - Opened by magnunor almost 4 years ago - 4 comments
Labels: enhancement, dev

#749 - Loading issues with non-square scans (.emi files)

Issue - State: closed - Opened by AmoghMG almost 4 years ago - 6 comments

#748 - mib_to_h5stack in 0.13.1 does not support single-chip detectors.

Issue - State: closed - Opened by emichr almost 4 years ago - 2 comments
Labels: bug

#737 - Synergies with LiberTEM, UDFs vs. map_blocks

Issue - State: closed - Opened by din14970 almost 4 years ago - 9 comments
Labels: discussion

#732 - Add test for mib reader and other improvements

Pull Request - State: closed - Opened by ericpre almost 4 years ago - 23 comments
Labels: status: stalled

#727 - Convention for masks

Issue - State: open - Opened by pc494 almost 4 years ago - 4 comments
Labels: discussion

#721 - Improved lazy plotting in HyperSpy

Issue - State: closed - Opened by magnunor almost 4 years ago - 1 comment
Labels: dev

#710 - Version to 0.13.0-rc.1 (and final checks/changes)

Pull Request - State: closed - Opened by pc494 about 4 years ago - 8 comments
Labels: dev

#708 - Gets coverage within one PR of 100%

Pull Request - State: closed - Opened by pc494 about 4 years ago - 3 comments
Labels: dev

#705 - Downstreaming code to diffsims

Pull Request - State: closed - Opened by pc494 about 4 years ago - 2 comments

#703 - Removing a duplicated route to getting diffraction variance

Pull Request - State: closed - Opened by pc494 about 4 years ago - 9 comments

#702 - Locking python version (to less than 3.9)

Pull Request - State: closed - Opened by pc494 about 4 years ago - 2 comments
Labels: dev

#701 - Upping coverage for indexationresults code

Pull Request - State: closed - Opened by pc494 about 4 years ago - 1 comment
Labels: dev

#699 - Restoring VectorMatching workflow to its v0.12 state

Pull Request - State: closed - Opened by pc494 about 4 years ago - 3 comments

#698 - Tidying up diffraction2d

Pull Request - State: closed - Opened by pc494 about 4 years ago - 2 comments

#697 - Merging background methods in Diffraction2D

Pull Request - State: closed - Opened by pc494 about 4 years ago - 4 comments

#688 - Reorder the methods in diffraction2d to increase readability

Pull Request - State: closed - Opened by pc494 about 4 years ago - 1 comment

#683 - Tidying up hot and dead pixel code

Pull Request - State: closed - Opened by pc494 about 4 years ago - 4 comments
Labels: needs review

#682 - Tidy up from #618

Pull Request - State: closed - Opened by pc494 about 4 years ago - 2 comments

#681 - unduplicating correct_bad_pixel (removing remove_dead_pixel)

Pull Request - State: closed - Opened by pc494 about 4 years ago - 7 comments
Labels: needs review

#680 - getting to coverage of dummy_data.py to 100%

Pull Request - State: closed - Opened by pc494 about 4 years ago - 4 comments

#679 - Tidying up the dummy data NBD code

Pull Request - State: closed - Opened by pc494 about 4 years ago - 3 comments
Labels: needs review

#677 - Upstreaming peakfinders, tidy up for the lazy/non-lazy implementations

Pull Request - State: closed - Opened by pc494 about 4 years ago - 1 comment
Labels: needs review

#676 - Tidying up the class arrangement for "ai"

Pull Request - State: closed - Opened by pc494 about 4 years ago - 2 comments
Labels: needs review

#674 - Improving code coverage and other touch ups

Pull Request - State: closed - Opened by pc494 about 4 years ago - 5 comments

#671 - Apply affine transform order default changed from 3 ---> 1

Pull Request - State: closed - Opened by pc494 about 4 years ago - 1 comment

#670 - Getting coverage reporting correctly again

Pull Request - State: closed - Opened by pc494 about 4 years ago - 2 comments

#667 - Moving skimage to 0.17 and Hyperspy to 1.6.1 + packaging for 0.12.3 release

Pull Request - State: closed - Opened by pc494 about 4 years ago - 4 comments

#665 - Starting 0.12.3 release

Pull Request - State: closed - Opened by pc494 about 4 years ago - 7 comments
Labels: enhancement, status: WIP, dev

#654 - Rebuilding the orientation mapping workflow to make use of orix.CrystalMap

Pull Request - State: closed - Opened by pc494 over 4 years ago - 8 comments
Labels: enhancement, breaking-change

#652 - scikit-image dependency update

Pull Request - State: closed - Opened by pc494 over 4 years ago - 3 comments
Labels: status: stalled, dev

#651 - Move testing to python versions 3.9 and 3.8

Pull Request - State: closed - Opened by pc494 over 4 years ago - 3 comments
Labels: status: stalled

#649 - Housekeeping, mainly moving the content of util modules

Pull Request - State: closed - Opened by pc494 over 4 years ago - 3 comments
Labels: breaking-change

#647 - Merging the patch level changes into the master branch (0.12.2)

Pull Request - State: closed - Opened by pc494 over 4 years ago - 3 comments

#645 - Release v0.12.2

Pull Request - State: closed - Opened by pc494 over 4 years ago - 1 comment

#644 - Patch (0.12.2) version updates (see #636)

Pull Request - State: closed - Opened by pc494 over 4 years ago - 4 comments

#638 - Alternative pattern matching metrics & approaches

Issue - State: closed - Opened by dnjohnstone over 4 years ago - 11 comments
Labels: enhancement, discussion

#634 - Support for multi-file .MIB datasets

Issue - State: closed - Opened by AndrewHerzing over 4 years ago - 21 comments
Labels: enhancement

#633 - Skipping ex-pixstem tests for speed

Pull Request - State: closed - Opened by pc494 over 4 years ago - 3 comments
Labels: dev

#627 - Small testing improvements

Pull Request - State: closed - Opened by pc494 over 4 years ago - 4 comments
Labels: dev

#626 - Renaming test_x folders to x

Pull Request - State: closed - Opened by pc494 over 4 years ago - 1 comment

GitHub / pyxem/pyxem issues and pull requests