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GitHub / python-microscopy/python-microscopy issues and pull requests

#1489 - More xyztc stuff

Pull Request - State: closed - Opened by Yujin-Bao about 2 years ago - 1 comment

#1489 - More xyztc stuff

Pull Request - State: closed - Opened by Yujin-Bao about 2 years ago - 1 comment

#1488 - quadtree fix

Pull Request - State: open - Opened by csoeller about 2 years ago

#1488 - quadtree fix

Pull Request - State: closed - Opened by csoeller about 2 years ago

#1486 - rebased version of #1482

Pull Request - State: closed - Opened by David-Baddeley about 2 years ago

#1486 - rebased version of #1482

Pull Request - State: closed - Opened by David-Baddeley about 2 years ago

#1485 - xyztc doc, bugfixes

Pull Request - State: closed - Opened by David-Baddeley about 2 years ago

#1485 - xyztc doc, bugfixes

Pull Request - State: closed - Opened by David-Baddeley about 2 years ago

#1484 - Make image metadata immutable???

Issue - State: open - Opened by David-Baddeley about 2 years ago
Labels: bug

#1483 - add a recipe module to modify the origin when needed

Pull Request - State: open - Opened by Yujin-Bao about 2 years ago

#1483 - add a recipe module to modify the origin when needed

Pull Request - State: open - Opened by Yujin-Bao about 2 years ago - 4 comments

#1482 - Sub ROI drift tracking - follow up of PR #1479

Pull Request - State: closed - Opened by Yujin-Bao about 2 years ago - 1 comment

#1482 - Sub ROI drift tracking - follow up of PR #1479

Pull Request - State: closed - Opened by Yujin-Bao about 2 years ago - 1 comment

#1481 - PIPython based Piezo class tweaks

Pull Request - State: closed - Opened by csoeller about 2 years ago - 1 comment

#1481 - PIPython based Piezo class tweaks

Pull Request - State: open - Opened by csoeller about 2 years ago

#1480 - Follow up of drift tracking refactoring for combining it with OIDIC

Pull Request - State: closed - Opened by Yujin-Bao about 2 years ago

#1480 - Follow up of drift tracking refactoring for combining it with OIDIC

Pull Request - State: open - Opened by Yujin-Bao about 2 years ago

#1479 - Enable sub-roi based drift tracking

Pull Request - State: closed - Opened by David-Baddeley about 2 years ago - 1 comment

#1479 - Enable sub-roi based drift tracking

Pull Request - State: closed - Opened by David-Baddeley about 2 years ago - 1 comment

#1478 - Reset piezo to the original position after acquiring an oidic z stack

Pull Request - State: closed - Opened by Yujin-Bao about 2 years ago - 1 comment

#1478 - Reset piezo to the original position after acquiring an oidic z stack

Pull Request - State: closed - Opened by Yujin-Bao about 2 years ago - 1 comment

#1477 - issue 1476 fix

Pull Request - State: closed - Opened by David-Baddeley about 2 years ago

#1477 - issue 1476 fix

Pull Request - State: closed - Opened by David-Baddeley about 2 years ago

#1476 - Possible solution to random crashes with PCO SDK

Issue - State: closed - Opened by pierrethibault about 2 years ago - 1 comment

#1475 - Make ROI half size in InterpFitR accessible and tunable in GUI

Pull Request - State: closed - Opened by Yujin-Bao about 2 years ago - 2 comments

#1475 - Make ROI half size in InterpFitR accessible and tunable in GUI

Pull Request - State: closed - Opened by Yujin-Bao about 2 years ago - 2 comments

#1474 - Drift tracking 2 - a follow up of PR#1473

Pull Request - State: closed - Opened by Yujin-Bao about 2 years ago - 1 comment

#1474 - Drift tracking 2 - a follow up of PR#1473

Pull Request - State: closed - Opened by Yujin-Bao about 2 years ago - 1 comment

#1472 - Fix AAOptoMDS(AOTF) initiation error

Pull Request - State: closed - Opened by Yujin-Bao about 2 years ago - 2 comments

#1472 - Fix AAOptoMDS(AOTF) initiation error

Pull Request - State: closed - Opened by Yujin-Bao about 2 years ago - 2 comments

#1471 - Replacement for #1468

Pull Request - State: closed - Opened by David-Baddeley about 2 years ago

#1471 - Replacement for #1468

Pull Request - State: closed - Opened by David-Baddeley about 2 years ago

#1470 - Python 3.10 compatibilty fixes

Pull Request - State: closed - Opened by csoeller about 2 years ago - 4 comments

#1470 - Python 3.10 compatibilty fixes

Pull Request - State: closed - Opened by csoeller about 2 years ago - 4 comments

#1469 - sCMOS map integration time fix - change to rounding

Pull Request - State: closed - Opened by csoeller about 2 years ago - 1 comment

#1469 - sCMOS map integration time fix - change to rounding

Pull Request - State: closed - Opened by csoeller about 2 years ago - 1 comment

#1468 - fix for AttributeError: 'LMAnalyser2' object has no attribute '_ovl'

Pull Request - State: closed - Opened by csoeller about 2 years ago - 2 comments

#1468 - fix for AttributeError: 'LMAnalyser2' object has no attribute '_ovl'

Pull Request - State: closed - Opened by csoeller about 2 years ago - 3 comments

#1467 - fix remaining numpy dtype expiries

Pull Request - State: closed - Opened by csoeller about 2 years ago - 2 comments

#1467 - fix remaining numpy dtype expiries

Pull Request - State: closed - Opened by csoeller about 2 years ago - 2 comments

#1466 - [BUG] Can't crop image, then run localization analysis on it

Issue - State: open - Opened by barentine about 2 years ago
Labels: bug

#1464 - [ENHANCEMENT]

Issue - State: open - Opened by Xulong-Wang about 2 years ago
Labels: enhancement

#1463 - [ENHANCEMENT] Point-scan "camera" base classes

Issue - State: open - Opened by barentine about 2 years ago - 8 comments
Labels: enhancement

#1462 - Add recipe modules - a follow up of the pull request #1451

Pull Request - State: open - Opened by Yujin-Bao about 2 years ago

#1462 - Add recipe modules - a follow up of the pull request #1451

Pull Request - State: closed - Opened by Yujin-Bao about 2 years ago

#1461 - Drift refactoring

Pull Request - State: closed - Opened by David-Baddeley about 2 years ago

#1460 - Remove deprecated np.bool calls

Pull Request - State: closed - Opened by zacsimile about 2 years ago - 3 comments

#1459 - Update PYMEAcquire basic usage doc page

Pull Request - State: closed - Opened by barentine over 2 years ago

#1458 - remove ref collision for PYMEVis / legacy VisGUI doc pages

Pull Request - State: open - Opened by barentine over 2 years ago

#1458 - remove ref collision for PYMEVis / legacy VisGUI doc pages

Pull Request - State: closed - Opened by barentine over 2 years ago

#1457 - Localization analysis doc touch-up

Pull Request - State: open - Opened by barentine over 2 years ago

#1456 - remove some (outdated) duplication in ModifyingPYMEAcquire doc

Pull Request - State: open - Opened by barentine over 2 years ago

#1456 - remove some (outdated) duplication in ModifyingPYMEAcquire doc

Pull Request - State: closed - Opened by barentine over 2 years ago

#1455 - formating fixes for Protocols.rst doc page

Pull Request - State: closed - Opened by barentine over 2 years ago

#1455 - formating fixes for Protocols.rst doc page

Pull Request - State: open - Opened by barentine over 2 years ago

#1454 - add IDS Peak camera class

Pull Request - State: closed - Opened by barentine over 2 years ago

#1454 - add IDS Peak camera class

Pull Request - State: closed - Opened by barentine over 2 years ago - 1 comment

#1453 - add to the acquisition protocols documentation

Pull Request - State: closed - Opened by barentine over 2 years ago - 2 comments

#1452 - [PROPOSAL] update colormap lutsize call for later matplotlibs (3.7.0+)

Issue - State: open - Opened by barentine over 2 years ago
Labels: enhancement

#1450 - expose andor cam setemgainmode from the ixon class

Pull Request - State: closed - Opened by barentine over 2 years ago - 2 comments

#1449 - [PROPOSAL] update np.int / other dtype aliases for compatibility with numpy 1.24+

Issue - State: open - Opened by barentine over 2 years ago - 1 comment
Labels: enhancement

#1448 - show 3D psf fit info when test this frame for InterpFitR-3D

Pull Request - State: closed - Opened by Yujin-Bao over 2 years ago - 1 comment

#1447 - add basic acquire server usage doc

Pull Request - State: open - Opened by barentine over 2 years ago - 3 comments

#1446 - InterpFitR-3D fit info visualization and two-modality acquisition

Pull Request - State: closed - Opened by Yujin-Bao over 2 years ago - 1 comment

#1445 - Splitter tidying

Pull Request - State: closed - Opened by David-Baddeley over 2 years ago - 14 comments

#1444 - [SUPPORT] camera splitter related updates

Issue - State: closed - Opened by csoeller over 2 years ago - 4 comments

#1442 - fix arduino GetAnalogs for py3 bytestr float conversion

Pull Request - State: closed - Opened by barentine over 2 years ago

#1440 - Plain vanilla astigmatic estimation

Pull Request - State: closed - Opened by David-Baddeley over 2 years ago

#1439 - pickle now throws an pickle.UnpicklingError; ds auto_promote fix

Pull Request - State: closed - Opened by csoeller over 2 years ago

#1438 - add function to change obis cw or modulated

Pull Request - State: open - Opened by d-perez-1 over 2 years ago

#1437 - LMAnalysis: cleaning up messages and also spurious creation of accelerators on macos

Pull Request - State: closed - Opened by csoeller over 2 years ago - 1 comment

#1436 - MetaData unpickling of some values, add 'latin1' encoding option

Pull Request - State: closed - Opened by csoeller over 2 years ago - 1 comment

#1435 - [BUG] some issues in unpickling older metadata

Issue - State: closed - Opened by csoeller over 2 years ago - 1 comment
Labels: bug

#1434 - Log and deprecation cleanup

Pull Request - State: closed - Opened by csoeller over 2 years ago

#1433 - [BUG] (mostly harmless) error when cancelling .csv and .mat file opening in PYMEVis

Issue - State: closed - Opened by csoeller over 2 years ago - 2 comments
Labels: bug

#1432 - Fix padding, add some warnings for poor PSF data.

Pull Request - State: closed - Opened by David-Baddeley over 2 years ago

#1431 - 4Pi deconvolution docs

Pull Request - State: closed - Opened by David-Baddeley over 2 years ago

#1430 - TextFileSource: change print info output to logging.info

Pull Request - State: closed - Opened by csoeller over 2 years ago - 1 comment

#1429 - warnings module, bugfixes

Pull Request - State: closed - Opened by David-Baddeley over 2 years ago - 1 comment

#1428 - [ENHANCEMENT] PYMEVis Snapshot option with bound-awareness

Issue - State: open - Opened by barentine over 2 years ago - 5 comments
Labels: enhancement

#1427 - Tidy up legacy metadata attribute access

Pull Request - State: closed - Opened by David-Baddeley over 2 years ago

#1426 - [BUG] PYMEImage crosshairs x,y and I display not updating

Issue - State: closed - Opened by barentine over 2 years ago - 6 comments
Labels: bug

#1425 - [ENHANCEMENT] check if some warnings, info messages are still required/useful

Issue - State: closed - Opened by csoeller over 2 years ago - 6 comments
Labels: enhancement

#1424 - fix "Test This Frame" behaviour to properly work on current frame in dh5view

Pull Request - State: closed - Opened by csoeller over 2 years ago - 2 comments

#1422 - Thorlabs motorized filter flipper

Pull Request - State: closed - Opened by barentine over 2 years ago - 2 comments

#1422 - Thorlabs motorized filter flipper

Pull Request - State: closed - Opened by barentine over 2 years ago - 2 comments

#1421 - Astigmatism hack

Pull Request - State: closed - Opened by David-Baddeley over 2 years ago

#1420 - fix fitfactory import in customAnalysisPanel for plug-in compatibility

Pull Request - State: closed - Opened by barentine over 2 years ago - 1 comment

#1419 - Fix for #1416

Pull Request - State: closed - Opened by David-Baddeley over 2 years ago - 1 comment

#1418 - Allow visualization of localizations colored by cluster measurements

Pull Request - State: closed - Opened by barentine over 2 years ago

#1417 - allow test frame to handle not subtracting background in fit

Pull Request - State: closed - Opened by barentine over 2 years ago - 1 comment

#1416 - [BUG] intensity_trace GUI broken

Issue - State: closed - Opened by d-perez-1 over 2 years ago
Labels: bug

#1415 - Alternative to #1370

Pull Request - State: closed - Opened by David-Baddeley over 2 years ago

#1414 - Some tidying

Pull Request - State: closed - Opened by David-Baddeley over 2 years ago