Ecosyste.ms: Issues

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GitHub / python-microscopy/python-microscopy issues and pull requests

#1354 - bugfixes

Pull Request - State: closed - Opened by David-Baddeley over 1 year ago

#1353 - [BUG] Recipe run failure kills pipeline, forces restart

Issue - State: open - Opened by zacsimile over 1 year ago - 1 comment
Labels: bug

#1352 - supress debug printing of metadatahandler contents when recipes are executed

Pull Request - State: closed - Opened by csoeller over 1 year ago - 4 comments

#1351 - fix typo in mergeClumps argument

Pull Request - State: closed - Opened by csoeller over 1 year ago - 1 comment

#1350 - [BUG] # typo in updated MergeClump module

Issue - State: closed - Opened by csoeller over 1 year ago - 1 comment
Labels: bug

#1349 - Automatic thresholding for dual marching cubes

Pull Request - State: closed - Opened by David-Baddeley over 1 year ago - 1 comment

#1348 - FFBase.getROIAtPoint fixes (axialHalfROI arg and actually cropping background)

Pull Request - State: closed - Opened by barentine over 1 year ago - 6 comments

#1347 - change relative DSView modules import to absolute

Pull Request - State: closed - Opened by barentine over 1 year ago

#1346 - [PROPOSAL] use absolute imports in PYME scripts (e.g. dsviewer.py)

Issue - State: closed - Opened by barentine over 1 year ago - 1 comment
Labels: enhancement

#1345 - try spooler test on azure again

Pull Request - State: closed - Opened by barentine over 1 year ago - 1 comment

#1344 - reinstantiate point display overlay if we don't have a filter

Pull Request - State: closed - Opened by barentine over 1 year ago - 2 comments

#1343 - [BUG] Testframe doesn't always draw found localizations

Issue - State: closed - Opened by barentine over 1 year ago - 1 comment
Labels: bug

#1342 - A few outstanding issues

Pull Request - State: closed - Opened by David-Baddeley over 1 year ago

#1341 - Deprecation and biplane fixes

Pull Request - State: closed - Opened by David-Baddeley over 1 year ago

#1340 - Topology functions + cleanup

Pull Request - State: closed - Opened by zacsimile over 1 year ago

#1339 - add "discard trivial" switch to MergeClumps module

Pull Request - State: closed - Opened by csoeller over 1 year ago - 1 comment

#1338 - recipe execution - remove indiscriminate print() statements

Pull Request - State: closed - Opened by csoeller over 1 year ago

#1337 - listctrlMixins fix - used to use a now changed wxWindows API access

Pull Request - State: closed - Opened by csoeller over 1 year ago - 1 comment

#1336 - Recipe .run() refactoring

Pull Request - State: closed - Opened by David-Baddeley over 1 year ago - 1 comment

#1335 - Fix for .h5r without events

Pull Request - State: closed - Opened by David-Baddeley over 1 year ago

#1334 - Mesh tidying

Pull Request - State: closed - Opened by David-Baddeley over 1 year ago - 2 comments

#1333 - Bugfixes / surface generation

Pull Request - State: closed - Opened by David-Baddeley over 1 year ago

#1332 - DetectPoints2D expansion

Pull Request - State: closed - Opened by David-Baddeley over 1 year ago

#1331 - [ENHANCEMENT] make OS dark mode settings look better / be usable

Issue - State: open - Opened by barentine almost 2 years ago - 21 comments
Labels: enhancement

#1330 - [BUG] Hitting enter in some parts of PYMEAcquire GUI starts a time series acquisition

Issue - State: closed - Opened by barentine almost 2 years ago - 3 comments
Labels: bug

#1329 - stop spool in test_cluster_spooling

Pull Request - State: closed - Opened by barentine almost 2 years ago - 1 comment

#1328 - [BUG] test_cluster_spooler.py waits for finished() method on HTTPSpoolerv2, which is incomplete

Issue - State: closed - Opened by barentine almost 2 years ago - 1 comment
Labels: bug

#1327 - change scipy.random to numpy.random calls

Pull Request - State: closed - Opened by barentine almost 2 years ago - 2 comments

#1326 - [PROPOSAL] remove scipy.random calls

Issue - State: closed - Opened by barentine almost 2 years ago - 1 comment
Labels: enhancement

#1324 - Fix trait input detection

Pull Request - State: closed - Opened by David-Baddeley almost 2 years ago

#1323 - Fix snapshot scaling for wx 4.1 on mac

Pull Request - State: closed - Opened by zacsimile almost 2 years ago

#1322 - More meshing improvements

Pull Request - State: closed - Opened by David-Baddeley almost 2 years ago

#1321 - [PROPOSAL] IDS Peak API version of ueye / ucam camera classes

Issue - State: closed - Opened by barentine almost 2 years ago - 4 comments
Labels: enhancement

#1320 - meshing tweaks

Pull Request - State: closed - Opened by David-Baddeley almost 2 years ago

#1319 - [BUG] Error when open PYMEAcquire

Issue - State: closed - Opened by Yujin-Bao almost 2 years ago - 4 comments
Labels: bug

#1318 - [BUG] Make sure current_version.json matches current version

Issue - State: open - Opened by David-Baddeley almost 2 years ago
Labels: bug

#1317 - issue #1307

Pull Request - State: closed - Opened by David-Baddeley almost 2 years ago

#1316 - [ENHANCEMENT] Tooltips

Issue - State: open - Opened by David-Baddeley almost 2 years ago - 2 comments
Labels: enhancement, good first issue

#1315 - Scaling tweaks (alt to #1314)

Pull Request - State: closed - Opened by David-Baddeley almost 2 years ago

#1314 - PYMEImage histogram bounds: use all pixels to calculate, add choice-box for method

Pull Request - State: closed - Opened by barentine almost 2 years ago - 4 comments

#1313 - Task accounting

Pull Request - State: closed - Opened by David-Baddeley almost 2 years ago - 2 comments

#1312 - Rule tweaks

Pull Request - State: closed - Opened by David-Baddeley about 2 years ago

#1311 - Unified selection and annotation

Pull Request - State: closed - Opened by David-Baddeley about 2 years ago

#1310 - [SUPPORT]

Issue - State: closed - Opened by d-perez-1 about 2 years ago - 3 comments

#1309 - Fixed size strings when saving to hdf tables

Pull Request - State: closed - Opened by David-Baddeley about 2 years ago - 6 comments

#1308 - Address comment on #1305

Pull Request - State: closed - Opened by David-Baddeley about 2 years ago

#1307 - [BUG] --root option doesn't work for PYMEClusterOfOne

Issue - State: closed - Opened by zacsimile about 2 years ago - 2 comments
Labels: bug

#1305 - Saner workaround for #1292

Pull Request - State: closed - Opened by David-Baddeley about 2 years ago - 2 comments

#1304 - Enable HDF in __aggregate_h5r

Pull Request - State: closed - Opened by zacsimile about 2 years ago

#1303 - Fix Measure2D for recent skimage

Pull Request - State: closed - Opened by David-Baddeley about 2 years ago

#1302 - Large .csv support

Pull Request - State: closed - Opened by David-Baddeley about 2 years ago

#1301 - Fix for layer bug

Pull Request - State: closed - Opened by David-Baddeley about 2 years ago

#1300 - [BUG] Unable to add new layers

Issue - State: closed - Opened by lukasfue about 2 years ago
Labels: bug

#1299 - [BUG] First layer in two-color datasets has no tab for editing but the data is still visualized

Issue - State: closed - Opened by lukasfue about 2 years ago - 1 comment
Labels: bug

#1298 - [BUG] Measure2D module breaks with latest skimage.measure.regionprops

Issue - State: closed - Opened by csoeller about 2 years ago - 2 comments
Labels: bug

#1297 - Fix mask display (recent numpy)

Pull Request - State: closed - Opened by David-Baddeley about 2 years ago

#1296 - Fix for #1295

Pull Request - State: closed - Opened by David-Baddeley about 2 years ago

#1295 - [BUG] Can't run simple recipe anymore - issue finding input datasource

Issue - State: closed - Opened by csoeller about 2 years ago - 2 comments
Labels: bug

#1294 - Traitsui fixes

Pull Request - State: closed - Opened by David-Baddeley about 2 years ago

#1293 - [BUG] Large data files

Issue - State: open - Opened by oubino about 2 years ago - 9 comments
Labels: enhancement

#1292 - [BUG] Traitsui list editor causes hard crash (segfault)

Issue - State: closed - Opened by David-Baddeley about 2 years ago - 3 comments
Labels: bug

#1291 - More docs

Pull Request - State: closed - Opened by David-Baddeley about 2 years ago

#1289 - Doc: short cluster intro / cluster of one call-out in cluster_install

Pull Request - State: closed - Opened by barentine about 2 years ago - 5 comments

#1285 - [BUG] Save snapshot is broken on OSX with wx 4.1.1

Issue - State: closed - Opened by zacsimile about 2 years ago - 4 comments
Labels: bug

#1284 - Add metadata to Octree and TriangleMesh and associated recipes

Pull Request - State: closed - Opened by zacsimile about 2 years ago - 3 comments

#1282 - [BUG] ueye oddity? StartAq timing & "buffer overflows"

Issue - State: closed - Opened by barentine about 2 years ago - 1 comment
Labels: bug

#1278 - [ENHANCEMENT] Reload Python module on Push to RuleServer in `debug` mode

Issue - State: closed - Opened by zacsimile about 2 years ago - 3 comments
Labels: enhancement

#1277 - Add output trigger options for Hamamatsu Orca cameras

Pull Request - State: closed - Opened by barentine about 2 years ago - 1 comment

#1270 - [ENHANCEMENT] PYMEAcquire histogram

Issue - State: closed - Opened by d-perez-1 over 2 years ago - 16 comments
Labels: enhancement

#1262 - [ENHANCEMENT] PYMEImage feature suggestions

Issue - State: open - Opened by d-perez-1 over 2 years ago - 12 comments
Labels: enhancement

#1255 - [BUG] Left section is missing in the lasted Mac version of PYMEvis

Issue - State: closed - Opened by ppa007hot over 2 years ago - 7 comments
Labels: bug

#1250 - [SUPPORT] HTTP 404 error when trying to added pyme python environment

Issue - State: closed - Opened by lukasfue over 2 years ago - 26 comments

#1238 - [PROPOSAL] fail hard on PYMEClusterOfOne --clusterUI if django isn't installed

Issue - State: closed - Opened by barentine over 2 years ago - 2 comments
Labels: enhancement

#1237 - [ENHANCEMENT] HTSMS simulator / demo

Issue - State: open - Opened by barentine over 2 years ago - 19 comments
Labels: enhancement

#1229 - [BUG] PSF extraction gives erroneous PSF at the end of the image stack

Issue - State: closed - Opened by lukasfue over 2 years ago - 15 comments
Labels: bug

#1227 - update fitpoints docstring to include some unit information

Pull Request - State: closed - Opened by barentine over 2 years ago

#1206 - Piezo C867 improvements - servo toggling and error messages

Pull Request - State: closed - Opened by csoeller over 2 years ago

#1204 - [SUPPORT] further rationalising logging in PYME?

Issue - State: closed - Opened by csoeller over 2 years ago - 4 comments

#1190 - [BUG] PYMEImage crosshair scaling and centering are off

Issue - State: open - Opened by barentine almost 3 years ago - 5 comments
Labels: bug

#1187 - [BUG] Mac M1 support

Issue - State: open - Opened by David-Baddeley almost 3 years ago - 14 comments

#1180 - ueye 4.96 driver updates, bugfixes, and output trigger options

Pull Request - State: closed - Opened by barentine almost 3 years ago - 5 comments

#1179 - [BUG] IDS uEye camera stall-outs when changing settings/acquiring images

Issue - State: closed - Opened by barentine almost 3 years ago - 10 comments
Labels: bug

#1165 - [SUPPORT] PYMEAcquire config doc pretty lacking

Issue - State: closed - Opened by barentine almost 3 years ago - 5 comments

#1041 - [ENHANCEMENT] get some clear instructions up somewhere how to update the one-click installer based installs

Issue - State: closed - Opened by csoeller over 3 years ago - 2 comments
Labels: documentation, enhancement

#991 - decorators for adding api status to class/function docs

Pull Request - State: open - Opened by David-Baddeley over 3 years ago - 9 comments

#969 - [ENHANCEMENT] some plugin docs

Issue - State: closed - Opened by csoeller over 3 years ago - 5 comments
Labels: enhancement

#951 - [SUPPORT] I am confused by Z-Stack vs. Z Stepped in PYMEAcquire

Issue - State: closed - Opened by zacsimile over 3 years ago - 8 comments

#917 - [BUG] menuinst doesn't work on conda install >=py37

Issue - State: closed - Opened by zacsimile over 3 years ago - 27 comments
Labels: bug, 3rd party

#890 - [ENHANCEMENT] Automatically select text in editable boxes when I hit tab

Issue - State: closed - Opened by zacsimile over 3 years ago - 4 comments
Labels: enhancement, wontfix

#809 - [ENHANCEMENT] BigTIFF support??

Issue - State: closed - Opened by David-Baddeley almost 4 years ago - 2 comments
Labels: enhancement, minor

#712 - [ENHANCEMENT] Easier camera map acquisition and processing - ROI indexing conventions?

Issue - State: closed - Opened by csoeller almost 4 years ago - 12 comments
Labels: enhancement

#704 - [ENHANCEMENT] Make default load/save folder match most recently opened file

Issue - State: closed - Opened by zacsimile almost 4 years ago - 1 comment
Labels: enhancement, wontfix

#657 - Py 3.8 and 3.9 compatibility issues

Issue - State: closed - Opened by David-Baddeley almost 4 years ago - 14 comments

#614 - [BUG] 3D jittered triangulation multiprocessing issue?

Issue - State: closed - Opened by barentine almost 4 years ago - 12 comments
Labels: bug

#490 - [BUG] RuleServer counting has potential to get bad if tasks fail/are reassigned

Issue - State: closed - Opened by barentine about 4 years ago - 8 comments
Labels: bug, HT

#483 - [ENHANCEMENT] Add Help>Update to PYMEVis, PYMEImage, PYMEAcquire

Issue - State: closed - Opened by zacsimile about 4 years ago - 16 comments
Labels: enhancement

#467 - [ENHANCEMENT/BUGFIX]: FitPoints traits don't include (base) fit module defaults

Issue - State: closed - Opened by barentine about 4 years ago - 1 comment
Labels: enhancement