Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / python-microscopy/python-microscopy issues and pull requests

#1455 - formating fixes for Protocols.rst doc page

Pull Request - State: open - Opened by barentine 11 months ago

#1454 - add IDS Peak camera class

Pull Request - State: closed - Opened by barentine 11 months ago - 1 comment

#1453 - add to the acquisition protocols documentation

Pull Request - State: closed - Opened by barentine 11 months ago - 2 comments

#1452 - [PROPOSAL] update colormap lutsize call for later matplotlibs (3.7.0+)

Issue - State: open - Opened by barentine 11 months ago
Labels: enhancement

#1450 - expose andor cam setemgainmode from the ixon class

Pull Request - State: closed - Opened by barentine 11 months ago - 2 comments

#1449 - [PROPOSAL] update np.int / other dtype aliases for compatibility with numpy 1.24+

Issue - State: open - Opened by barentine 11 months ago - 1 comment
Labels: enhancement

#1448 - show 3D psf fit info when test this frame for InterpFitR-3D

Pull Request - State: closed - Opened by Yujin-Bao 11 months ago - 1 comment

#1447 - add basic acquire server usage doc

Pull Request - State: open - Opened by barentine 11 months ago - 3 comments

#1446 - InterpFitR-3D fit info visualization and two-modality acquisition

Pull Request - State: closed - Opened by Yujin-Bao 11 months ago - 1 comment

#1445 - Splitter tidying

Pull Request - State: closed - Opened by David-Baddeley 12 months ago - 14 comments

#1444 - [SUPPORT] camera splitter related updates

Issue - State: closed - Opened by csoeller almost 1 year ago - 4 comments

#1443 - Add `anndata` data source

Pull Request - State: closed - Opened by zacsimile almost 1 year ago - 1 comment

#1442 - fix arduino GetAnalogs for py3 bytestr float conversion

Pull Request - State: closed - Opened by barentine about 1 year ago

#1441 - add an external sync acquisition / readout mode, particularly for Hamamatsu cmos

Pull Request - State: open - Opened by barentine about 1 year ago - 3 comments

#1440 - Plain vanilla astigmatic estimation

Pull Request - State: closed - Opened by David-Baddeley about 1 year ago

#1439 - pickle now throws an pickle.UnpicklingError; ds auto_promote fix

Pull Request - State: closed - Opened by csoeller about 1 year ago

#1438 - add function to change obis cw or modulated

Pull Request - State: open - Opened by d-perez-1 about 1 year ago

#1437 - LMAnalysis: cleaning up messages and also spurious creation of accelerators on macos

Pull Request - State: closed - Opened by csoeller about 1 year ago - 1 comment

#1436 - MetaData unpickling of some values, add 'latin1' encoding option

Pull Request - State: closed - Opened by csoeller about 1 year ago - 1 comment

#1435 - [BUG] some issues in unpickling older metadata

Issue - State: closed - Opened by csoeller about 1 year ago - 1 comment
Labels: bug

#1434 - Log and deprecation cleanup

Pull Request - State: closed - Opened by csoeller about 1 year ago

#1433 - [BUG] (mostly harmless) error when cancelling .csv and .mat file opening in PYMEVis

Issue - State: closed - Opened by csoeller about 1 year ago - 2 comments
Labels: bug

#1432 - Fix padding, add some warnings for poor PSF data.

Pull Request - State: closed - Opened by David-Baddeley about 1 year ago

#1431 - 4Pi deconvolution docs

Pull Request - State: closed - Opened by David-Baddeley about 1 year ago

#1430 - TextFileSource: change print info output to logging.info

Pull Request - State: closed - Opened by csoeller about 1 year ago - 1 comment

#1429 - warnings module, bugfixes

Pull Request - State: closed - Opened by David-Baddeley about 1 year ago - 1 comment

#1428 - [ENHANCEMENT] PYMEVis Snapshot option with bound-awareness

Issue - State: open - Opened by barentine about 1 year ago - 5 comments
Labels: enhancement

#1427 - Tidy up legacy metadata attribute access

Pull Request - State: closed - Opened by David-Baddeley about 1 year ago

#1426 - [BUG] PYMEImage crosshairs x,y and I display not updating

Issue - State: closed - Opened by barentine about 1 year ago - 6 comments
Labels: bug

#1425 - [ENHANCEMENT] check if some warnings, info messages are still required/useful

Issue - State: closed - Opened by csoeller about 1 year ago - 6 comments
Labels: enhancement

#1424 - fix "Test This Frame" behaviour to properly work on current frame in dh5view

Pull Request - State: closed - Opened by csoeller about 1 year ago - 2 comments

#1422 - Thorlabs motorized filter flipper

Pull Request - State: closed - Opened by barentine about 1 year ago - 2 comments

#1421 - Astigmatism hack

Pull Request - State: closed - Opened by David-Baddeley about 1 year ago

#1420 - fix fitfactory import in customAnalysisPanel for plug-in compatibility

Pull Request - State: closed - Opened by barentine about 1 year ago - 1 comment

#1419 - Fix for #1416

Pull Request - State: closed - Opened by David-Baddeley about 1 year ago - 1 comment

#1418 - Allow visualization of localizations colored by cluster measurements

Pull Request - State: closed - Opened by barentine about 1 year ago

#1417 - allow test frame to handle not subtracting background in fit

Pull Request - State: closed - Opened by barentine about 1 year ago - 1 comment

#1416 - [BUG] intensity_trace GUI broken

Issue - State: closed - Opened by d-perez-1 about 1 year ago
Labels: bug

#1415 - Alternative to #1370

Pull Request - State: closed - Opened by David-Baddeley about 1 year ago

#1414 - Some tidying

Pull Request - State: closed - Opened by David-Baddeley about 1 year ago

#1413 - Enable Private Vulnerability Reporting in GitHub

Issue - State: closed - Opened by ZuhairORZaki about 1 year ago - 1 comment

#1412 - [SUPPORT] Accesing 'MainFrame' from Other PYME Functions

Issue - State: open - Opened by Yujin-Bao over 1 year ago - 2 comments

#1411 - Feature based fiducial linkage

Pull Request - State: closed - Opened by David-Baddeley over 1 year ago

#1410 - actually commit docs conf fixes

Pull Request - State: closed - Opened by David-Baddeley over 1 year ago

#1409 - [SUPPORT] issue of conflicts with pyme-depends and python>3.7 ?

Issue - State: closed - Opened by csoeller over 1 year ago - 3 comments

#1408 - Tentative fix for #1397

Pull Request - State: closed - Opened by David-Baddeley over 1 year ago - 1 comment

#1407 - Fix cropping metadata

Pull Request - State: closed - Opened by David-Baddeley over 1 year ago

#1406 - Blob finding tweaks

Pull Request - State: closed - Opened by David-Baddeley over 1 year ago

#1405 - actually use ROI size parameter

Pull Request - State: closed - Opened by David-Baddeley over 1 year ago

#1404 - shiftfield tweaks

Pull Request - State: closed - Opened by David-Baddeley over 1 year ago

#1402 - Enable opening of headerless ViSP files

Pull Request - State: closed - Opened by zacsimile over 1 year ago - 2 comments

#1401 - [BUG] cropping metadata slice starts always starts at zero

Issue - State: closed - Opened by barentine over 1 year ago - 2 comments
Labels: bug

#1400 - [ENHANCEMENT] Export ImageStack to series of images suitable for video-generation by ffmpeg

Issue - State: closed - Opened by barentine over 1 year ago - 2 comments
Labels: enhancement

#1398 - Mesh visualisation in notebooks

Pull Request - State: closed - Opened by David-Baddeley over 1 year ago - 3 comments

#1397 - [BUG] MDHandler error in SKFilter recipe module

Issue - State: closed - Opened by barentine over 1 year ago - 3 comments
Labels: bug

#1395 - Coherent Sapphire Interface

Pull Request - State: closed - Opened by abalaji0827 over 1 year ago

#1394 - test coundir import separate, expect fail on windows

Pull Request - State: closed - Opened by barentine over 1 year ago

#1393 - [BUG] countdir relative import fails

Issue - State: closed - Opened by barentine over 1 year ago
Labels: bug

#1392 - add picoquant taiko m1 support

Pull Request - State: open - Opened by barentine over 1 year ago - 2 comments

#1391 - fix c867 syntax error

Pull Request - State: closed - Opened by barentine over 1 year ago

#1390 - powerControlable to mirror power_controllable in OBIS and MPBCW

Pull Request - State: closed - Opened by barentine over 1 year ago - 3 comments

#1389 - add support for obis controller echo

Pull Request - State: closed - Opened by barentine over 1 year ago

#1388 - Add threaded version of PIPython GCSPiezo and some GCSPiezo fixes

Pull Request - State: closed - Opened by barentine over 1 year ago

#1387 - watershed function[SUPPORT]

Issue - State: closed - Opened by Z-Qing over 1 year ago - 3 comments

#1386 - [BUG] Save Snapshot error

Issue - State: closed - Opened by lukasfue over 1 year ago - 2 comments
Labels: bug

#1385 - Some compatibility and deprecation fixes

Pull Request - State: closed - Opened by David-Baddeley over 1 year ago

#1383 - Orca/Fusion programmable output trigger improvements

Pull Request - State: closed - Opened by barentine over 1 year ago

#1382 - Add PYMEAcquire intensity trace page / panel

Pull Request - State: closed - Opened by barentine over 1 year ago - 1 comment

#1381 - [ENHANCEMENT] Ability to install plugins in the one-click install version of PYME.

Issue - State: closed - Opened by lukasfue over 1 year ago - 3 comments
Labels: enhancement

#1380 - [SUPPORT] UnsatisfiableError when attempting to do a development install

Issue - State: closed - Opened by lukasfue over 1 year ago - 4 comments

#1379 - render 3D image[SUPPORT]

Issue - State: open - Opened by Z-Qing over 1 year ago - 2 comments

#1378 - get correct parent window for anotation

Pull Request - State: closed - Opened by David-Baddeley over 1 year ago

#1376 - Pad to avoid wrapping in PSF extraction

Pull Request - State: closed - Opened by David-Baddeley over 1 year ago

#1375 - fix regressions in PYMEAcquire web UI

Pull Request - State: closed - Opened by David-Baddeley over 1 year ago

#1374 - fix trait name in clusterAnalysis measure clusters

Pull Request - State: closed - Opened by barentine over 1 year ago

#1373 - [BUG] DBSCAN seems to be broken

Issue - State: closed - Opened by lukasfue over 1 year ago - 14 comments
Labels: bug

#1372 - add cython-generated func_octree.c to .gitignore

Pull Request - State: closed - Opened by barentine over 1 year ago

#1371 - [BUG] LMDisplay module loading from PYMEImage fails

Issue - State: closed - Opened by barentine over 1 year ago
Labels: bug

#1370 - Pull fitfactory-specific default parameters in recipes.measurement.FitPoints

Pull Request - State: closed - Opened by barentine over 1 year ago - 2 comments

#1369 - add pipython-based piezo class, note that e727 controller is supported

Pull Request - State: closed - Opened by barentine over 1 year ago - 1 comment

#1368 - Add class to wrap multiaxis controllers to mimic single-axis piezo object

Pull Request - State: closed - Opened by barentine over 1 year ago - 2 comments

#1367 - .pxd propagation

Pull Request - State: closed - Opened by David-Baddeley over 1 year ago

#1366 - .pxd propagation

Pull Request - State: closed - Opened by David-Baddeley over 1 year ago

#1365 - .pxd propagation

Pull Request - State: closed - Opened by David-Baddeley over 1 year ago

#1364 - hopefully fix ch_shrinkwrap compilation issues on win

Pull Request - State: closed - Opened by David-Baddeley over 1 year ago

#1363 - [Proposal] propagate or log recipe errors in PYMEImage

Issue - State: closed - Opened by barentine over 1 year ago - 2 comments
Labels: bug

#1362 - Label astigmatic CRB curves during PSF extraction

Pull Request - State: closed - Opened by barentine over 1 year ago - 1 comment

#1361 - [BUG] Numpy version compatibilty / pinning

Issue - State: open - Opened by David-Baddeley over 1 year ago - 2 comments
Labels: bug

#1360 - [SUPPORT] What is PYMEImage 'X-Z' or 'Y-Z' slice supposed to do?

Issue - State: open - Opened by barentine over 1 year ago - 2 comments

#1359 - allow FitFactories (custom localization routines) from plugins

Pull Request - State: closed - Opened by barentine over 1 year ago - 5 comments

#1358 - auto threshold debuging

Pull Request - State: closed - Opened by David-Baddeley over 1 year ago

#1357 - open OBF and MSR files without java/bioformats

Pull Request - State: closed - Opened by barentine over 1 year ago

#1355 - [PROPOSAL] update metadata from file functionality in PYMEImage (maybe PYMEVis too)

Issue - State: open - Opened by barentine over 1 year ago - 1 comment
Labels: enhancement