Ecosyste.ms: Issues

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GitHub / python-microscopy/python-microscopy issues and pull requests

#1556 - Tiling miscellaneous

Pull Request - State: open - Opened by David-Baddeley 14 days ago

#1555 - fix IDS roi setting, flag software trigger

Pull Request - State: open - Opened by barentine 15 days ago

#1554 - [ENHANCEMENT] Timestamps for triggered acquisition modes

Issue - State: open - Opened by David-Baddeley 20 days ago
Labels: enhancement

#1553 - Enable loading of SMAP files

Pull Request - State: open - Opened by zacsimile 22 days ago - 2 comments

#1552 - ids peak camera bug fixes & adding software triggering

Pull Request - State: closed - Opened by barentine 26 days ago - 1 comment

#1551 - raster scan camera shim

Pull Request - State: open - Opened by barentine about 1 month ago - 1 comment

#1549 - [BUG] Alpha for surfaces only working on 1/4 of screen Mac M1

Issue - State: open - Opened by zacsimile about 2 months ago
Labels: bug

#1548 - small fix: string conversion of session dir before use in replace method

Pull Request - State: closed - Opened by csoeller about 2 months ago - 3 comments

#1547 - fix remaining import leftover

Pull Request - State: closed - Opened by csoeller 2 months ago - 1 comment

#1546 - Issue 1527

Pull Request - State: closed - Opened by David-Baddeley 2 months ago

#1545 - [BUG] ids peak support for uEye-only cameras issues

Issue - State: open - Opened by barentine 3 months ago - 1 comment
Labels: bug

#1544 - update note on ids peak install instructions for 2.10 and later ids peak

Pull Request - State: closed - Opened by barentine 3 months ago - 1 comment

#1543 - image_bounds_superset

Pull Request - State: closed - Opened by David-Baddeley 3 months ago - 4 comments

#1542 - Session paths handling

Pull Request - State: closed - Opened by csoeller 3 months ago - 13 comments

#1541 - set new imagebounds when loading a session

Pull Request - State: closed - Opened by csoeller 3 months ago - 2 comments

#1540 - Fix PYMEAcquire regression when no z piezo

Pull Request - State: closed - Opened by David-Baddeley 3 months ago

#1539 - Fix uc480 regression

Pull Request - State: closed - Opened by David-Baddeley 3 months ago

#1538 - Make rule-based analysis work with different acquisition types

Pull Request - State: closed - Opened by David-Baddeley 3 months ago - 3 comments

#1537 - without the missing wx import dh5view fails

Pull Request - State: closed - Opened by csoeller 3 months ago - 2 comments

#1536 - Olympus IX81 control code with command set - currently halogen lamp only

Pull Request - State: closed - Opened by Yujin-Bao 3 months ago - 3 comments

#1535 - Fix cluster analysis regression

Pull Request - State: closed - Opened by David-Baddeley 3 months ago

#1534 - Fix rotation matrix

Pull Request - State: closed - Opened by David-Baddeley 3 months ago

#1533 - [BUG] pymevis: possible bug with new OpenGL core profile viewpoint mapping/manipulation

Issue - State: closed - Opened by csoeller 3 months ago - 2 comments
Labels: bug

#1532 - fix point sprite regression

Pull Request - State: closed - Opened by David-Baddeley 4 months ago - 1 comment

#1531 - Fix for TypeError when no Track Fiducials selected

Pull Request - State: closed - Opened by Yujin-Bao 4 months ago - 3 comments

#1530 - Initial steps to move away from deprecated OpenGL functionality

Pull Request - State: closed - Opened by David-Baddeley 4 months ago - 21 comments

#1529 - Add a labels layer type for annotated tabular data

Pull Request - State: closed - Opened by David-Baddeley 4 months ago - 1 comment

#1528 - make version string compilation a little more robust

Pull Request - State: closed - Opened by csoeller 4 months ago - 1 comment

#1527 - [SUPPORT] How achieve compatibility with latest matplotlib?

Issue - State: open - Opened by csoeller 4 months ago - 8 comments

#1526 - FRC canvas set title fix for compat with newer matplotlibs

Pull Request - State: closed - Opened by csoeller 4 months ago - 1 comment

#1525 - [BUG] FRC canvas set title error with matplotlib > 3.4

Issue - State: open - Opened by csoeller 4 months ago
Labels: bug

#1524 - Plugin factory

Pull Request - State: open - Opened by David-Baddeley 4 months ago

#1523 - PYMEVis extra datasources

Pull Request - State: closed - Opened by David-Baddeley 5 months ago - 16 comments

#1522 - OIDICFrameSource tweaks

Pull Request - State: closed - Opened by David-Baddeley 5 months ago - 5 comments

#1521 - [ENHANCEMENT] recipe input modules for some scenarios

Issue - State: open - Opened by csoeller 5 months ago - 3 comments
Labels: enhancement

#1520 - point quiver enginer/layer for single molecule orientation microscopy data

Pull Request - State: open - Opened by barentine 5 months ago - 2 comments

#1519 - GUI recipe delete

Pull Request - State: closed - Opened by David-Baddeley 5 months ago - 2 comments

#1518 - [ENHANCEMENT] Title the localization analysis `Test This Frame` plots, or remove them

Issue - State: open - Opened by barentine 5 months ago - 1 comment
Labels: enhancement

#1517 - [ENHANCEMENT] un-hardcode some things in Corrections > Fiducials

Issue - State: open - Opened by barentine 5 months ago - 2 comments
Labels: enhancement

#1516 - [ENHANCEMENT] simple way to graphically delete a recipe module

Issue - State: open - Opened by barentine 5 months ago - 3 comments
Labels: enhancement

#1515 - fix cropped im metadata so it is serializable

Pull Request - State: closed - Opened by barentine 5 months ago

#1514 - make scipy.stats.mode call compatible with scipy>=1.10

Pull Request - State: closed - Opened by barentine 5 months ago - 4 comments

#1511 - Add a protocol for fluorescence capturing

Pull Request - State: closed - Opened by Yujin-Bao 6 months ago - 4 comments

#1509 - Fix for performance issue with remote spooling

Pull Request - State: closed - Opened by David-Baddeley 6 months ago - 1 comment

#1508 - Fix dialog windows in dark mode

Pull Request - State: closed - Opened by zacsimile 6 months ago

#1507 - [ENHANCEMENT] Bump dependencies, fix packaging

Issue - State: open - Opened by David-Baddeley 6 months ago - 6 comments
Labels: enhancement

#1506 - More py310 compatability fixes

Pull Request - State: closed - Opened by csoeller 6 months ago - 1 comment

#1505 - [BUG] wx._core.wxAssertionError when adding recipe modules

Issue - State: closed - Opened by Yujin-Bao 6 months ago - 8 comments
Labels: bug

#1504 - [ENHANCEMENT] Quiver rendering without vertices (e.g. for dipole orientation visualization)

Issue - State: open - Opened by barentine 7 months ago - 2 comments
Labels: enhancement

#1502 - PCO index out of bounds fix

Pull Request - State: closed - Opened by David-Baddeley 7 months ago - 7 comments

#1501 - Modification to #1497

Pull Request - State: closed - Opened by David-Baddeley 7 months ago - 1 comment

#1500 - Dark mode traits

Pull Request - State: closed - Opened by David-Baddeley 7 months ago - 9 comments

#1499 - [BUG] Unable to restore layers tab after unpinning on macOS

Issue - State: closed - Opened by zacsimile 7 months ago - 3 comments
Labels: bug

#1498 - Changes to text import behavior.

Pull Request - State: closed - Opened by zacsimile 7 months ago

#1497 - Small bugfix and follow-up on PR#1495

Pull Request - State: closed - Opened by Yujin-Bao 7 months ago - 3 comments

#1495 - Queued actions improvements

Pull Request - State: closed - Opened by David-Baddeley 7 months ago - 2 comments

#1494 - [BUG] dependency for newish fit _factory does not get built?

Issue - State: closed - Opened by csoeller 8 months ago - 2 comments
Labels: bug

#1493 - scaffold for sub-pixel drift correction for time series

Pull Request - State: open - Opened by Yujin-Bao 8 months ago - 9 comments

#1492 - Spooling refactoring

Pull Request - State: closed - Opened by David-Baddeley 8 months ago - 8 comments

#1491 - [SUPPORT] Saving filtered localizations

Issue - State: closed - Opened by loekloek 8 months ago

#1490 - Spherical Harmonics Fit Error

Issue - State: open - Opened by loekloek 8 months ago - 2 comments

#1489 - More xyztc stuff

Pull Request - State: closed - Opened by Yujin-Bao 8 months ago - 1 comment

#1488 - quadtree fix

Pull Request - State: closed - Opened by csoeller 8 months ago

#1487 - [BUG] bug in quad tree construction during drift correction

Issue - State: closed - Opened by csoeller 8 months ago - 3 comments
Labels: bug

#1486 - rebased version of #1482

Pull Request - State: closed - Opened by David-Baddeley 8 months ago

#1485 - xyztc doc, bugfixes

Pull Request - State: closed - Opened by David-Baddeley 8 months ago

#1484 - Make image metadata immutable???

Issue - State: open - Opened by David-Baddeley 8 months ago
Labels: bug

#1483 - add a recipe module to modify the origin when needed

Pull Request - State: open - Opened by Yujin-Bao 8 months ago - 4 comments

#1482 - Sub ROI drift tracking - follow up of PR #1479

Pull Request - State: closed - Opened by Yujin-Bao 9 months ago - 1 comment

#1481 - PIPython based Piezo class tweaks

Pull Request - State: closed - Opened by csoeller 9 months ago - 1 comment

#1479 - Enable sub-roi based drift tracking

Pull Request - State: closed - Opened by David-Baddeley 9 months ago - 1 comment

#1478 - Reset piezo to the original position after acquiring an oidic z stack

Pull Request - State: closed - Opened by Yujin-Bao 9 months ago - 1 comment

#1477 - issue 1476 fix

Pull Request - State: closed - Opened by David-Baddeley 9 months ago

#1476 - Possible solution to random crashes with PCO SDK

Issue - State: closed - Opened by pierrethibault 9 months ago - 1 comment

#1475 - Make ROI half size in InterpFitR accessible and tunable in GUI

Pull Request - State: closed - Opened by Yujin-Bao 9 months ago - 2 comments

#1474 - Drift tracking 2 - a follow up of PR#1473

Pull Request - State: closed - Opened by Yujin-Bao 9 months ago - 1 comment

#1472 - Fix AAOptoMDS(AOTF) initiation error

Pull Request - State: closed - Opened by Yujin-Bao 9 months ago - 2 comments

#1471 - Replacement for #1468

Pull Request - State: closed - Opened by David-Baddeley 9 months ago

#1470 - Python 3.10 compatibilty fixes

Pull Request - State: closed - Opened by csoeller 9 months ago - 4 comments

#1469 - sCMOS map integration time fix - change to rounding

Pull Request - State: closed - Opened by csoeller 9 months ago - 1 comment

#1468 - fix for AttributeError: 'LMAnalyser2' object has no attribute '_ovl'

Pull Request - State: closed - Opened by csoeller 9 months ago - 3 comments

#1467 - fix remaining numpy dtype expiries

Pull Request - State: closed - Opened by csoeller 9 months ago - 2 comments

#1466 - [BUG] Can't crop image, then run localization analysis on it

Issue - State: open - Opened by barentine 9 months ago - 4 comments
Labels: bug

#1465 - [BUG] Bakeshop does not currently allow for localizations to be read from csv files

Issue - State: open - Opened by abalaji0827 9 months ago - 4 comments
Labels: bug

#1463 - [ENHANCEMENT] Point-scan "camera" base classes

Issue - State: open - Opened by barentine 10 months ago - 2 comments
Labels: enhancement

#1462 - Add recipe modules - a follow up of the pull request #1451

Pull Request - State: closed - Opened by Yujin-Bao 10 months ago

#1461 - Drift refactoring

Pull Request - State: closed - Opened by David-Baddeley 10 months ago

#1460 - Remove deprecated np.bool calls

Pull Request - State: closed - Opened by zacsimile 11 months ago - 3 comments

#1459 - Update PYMEAcquire basic usage doc page

Pull Request - State: open - Opened by barentine 11 months ago

#1458 - remove ref collision for PYMEVis / legacy VisGUI doc pages

Pull Request - State: open - Opened by barentine 11 months ago

#1457 - Localization analysis doc touch-up

Pull Request - State: open - Opened by barentine 11 months ago

#1456 - remove some (outdated) duplication in ModifyingPYMEAcquire doc

Pull Request - State: open - Opened by barentine 11 months ago