Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / pystatgen/sgkit issues and pull requests

#975 - Initial gene-ε implementation

Pull Request - State: closed - Opened by tomwhite almost 2 years ago - 18 comments

#973 - `simulate_genotype_call_dataset` doesn't add phasing info

Issue - State: closed - Opened by benjeffery almost 2 years ago

#966 - Improve control over float formatting in VCF writer

Issue - State: open - Opened by tomwhite almost 2 years ago - 1 comment
Labels: enhancement, IO

#963 - Expected founder/ancestor contributions from pedigree structure

Issue - State: closed - Opened by timothymillar almost 2 years ago
Labels: enhancement

#956 - Example notebook exercising polyploidy and pedigree work

Issue - State: closed - Opened by hammer almost 2 years ago - 1 comment
Labels: documentation

#949 - `pooch` missing due to `bed_reader`?

Issue - State: closed - Opened by ravwojdyla almost 2 years ago - 7 comments
Labels: bug, upstream

#939 - Run `numba` compilation as a post-install step?

Issue - State: closed - Opened by benjeffery almost 2 years ago - 6 comments
Labels: performance

#934 - `gwas_tutorial.ipynb` taking too long to run.

Issue - State: open - Opened by benjeffery almost 2 years ago - 10 comments

#926 - Output plink

Issue - State: closed - Opened by jeromekelleher almost 2 years ago
Labels: enhancement, IO

#924 - VCF export

Issue - State: closed - Opened by jeromekelleher almost 2 years ago - 11 comments
Labels: enhancement, IO

#915 - Test on Python 3.11

Issue - State: closed - Opened by tomwhite about 2 years ago - 1 comment
Labels: process + tools

#911 - genotype_count_spec is inconsistent with VCF spec

Issue - State: closed - Opened by timothymillar about 2 years ago - 5 comments

#910 - Logging from vcf_to_zarr

Issue - State: open - Opened by jeromekelleher about 2 years ago - 2 comments
Labels: enhancement

#892 - Add mean imputation function

Pull Request - State: open - Opened by tszfungc about 2 years ago - 8 comments
Labels: conflict

#869 - Disable numba caching via environment variable

Issue - State: closed - Opened by timothymillar about 2 years ago - 4 comments
Labels: process + tools

#842 - ♻️ cirun not shutting down GCE instances

Issue - State: open - Opened by ravwojdyla over 2 years ago - 19 comments
Labels: bug, process + tools

#814 - GPU tests are failing with latest Numba version

Issue - State: closed - Opened by aktech over 2 years ago - 1 comment

#734 - Add function to get max sizes of fields from VCF

Issue - State: closed - Opened by tomwhite almost 3 years ago - 1 comment
Labels: IO

#687 - Provide progress bar for `vcf_to_zarr`

Issue - State: closed - Opened by hammer about 3 years ago - 10 comments
Labels: IO

#655 - Support macOS arm64 processors

Issue - State: open - Opened by tomwhite about 3 years ago - 10 comments
Labels: process + tools

#634 - Investigate ragged arrays to represent alleles

Issue - State: open - Opened by tomwhite about 3 years ago - 6 comments
Labels: data representation

#585 - Ancestral vs. derived allele

Issue - State: open - Opened by hammer over 3 years ago - 5 comments

#571 - Support mixed ploidy in display_genotypes

Issue - State: closed - Opened by timothymillar over 3 years ago - 7 comments

#347 - Add documentation on how to persist computations in a workflow

Issue - State: open - Opened by eric-czech almost 4 years ago - 5 comments
Labels: documentation

#309 - Add plink_to_zarr function

Issue - State: closed - Opened by eric-czech almost 4 years ago - 1 comment
Labels: IO

#64 - Add tskit as import format?

Issue - State: open - Opened by jeromekelleher about 4 years ago - 9 comments
Labels: enhancement, question, IO

#53 - Command-line interface (CLI) with plugins

Issue - State: closed - Opened by hammer about 4 years ago - 6 comments
Labels: IO, multi-repo, CLI