Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / pystatgen/sgkit issues and pull requests
#975 - Initial gene-ε implementation
Pull Request -
State: closed - Opened by tomwhite almost 2 years ago
- 18 comments
#973 - `simulate_genotype_call_dataset` doesn't add phasing info
Issue -
State: closed - Opened by benjeffery almost 2 years ago
#966 - Improve control over float formatting in VCF writer
Issue -
State: open - Opened by tomwhite almost 2 years ago
- 1 comment
Labels: enhancement, IO
#963 - Expected founder/ancestor contributions from pedigree structure
Issue -
State: closed - Opened by timothymillar almost 2 years ago
Labels: enhancement
#956 - Example notebook exercising polyploidy and pedigree work
Issue -
State: closed - Opened by hammer almost 2 years ago
- 1 comment
Labels: documentation
#949 - `pooch` missing due to `bed_reader`?
Issue -
State: closed - Opened by ravwojdyla almost 2 years ago
- 7 comments
Labels: bug, upstream
#939 - Run `numba` compilation as a post-install step?
Issue -
State: closed - Opened by benjeffery almost 2 years ago
- 6 comments
Labels: performance
#934 - `gwas_tutorial.ipynb` taking too long to run.
Issue -
State: open - Opened by benjeffery almost 2 years ago
- 10 comments
#926 - Output plink
Issue -
State: closed - Opened by jeromekelleher almost 2 years ago
Labels: enhancement, IO
#924 - VCF export
Issue -
State: closed - Opened by jeromekelleher almost 2 years ago
- 11 comments
Labels: enhancement, IO
#915 - Test on Python 3.11
Issue -
State: closed - Opened by tomwhite about 2 years ago
- 1 comment
Labels: process + tools
#911 - genotype_count_spec is inconsistent with VCF spec
Issue -
State: closed - Opened by timothymillar about 2 years ago
- 5 comments
#910 - Logging from vcf_to_zarr
Issue -
State: open - Opened by jeromekelleher about 2 years ago
- 2 comments
Labels: enhancement
#892 - Add mean imputation function
Pull Request -
State: open - Opened by tszfungc about 2 years ago
- 8 comments
Labels: conflict
#869 - Disable numba caching via environment variable
Issue -
State: closed - Opened by timothymillar about 2 years ago
- 4 comments
Labels: process + tools
#842 - ♻️ cirun not shutting down GCE instances
Issue -
State: open - Opened by ravwojdyla over 2 years ago
- 19 comments
Labels: bug, process + tools
#814 - GPU tests are failing with latest Numba version
Issue -
State: closed - Opened by aktech over 2 years ago
- 1 comment
#734 - Add function to get max sizes of fields from VCF
Issue -
State: closed - Opened by tomwhite almost 3 years ago
- 1 comment
Labels: IO
#687 - Provide progress bar for `vcf_to_zarr`
Issue -
State: closed - Opened by hammer about 3 years ago
- 10 comments
Labels: IO
#655 - Support macOS arm64 processors
Issue -
State: open - Opened by tomwhite about 3 years ago
- 10 comments
Labels: process + tools
#634 - Investigate ragged arrays to represent alleles
Issue -
State: open - Opened by tomwhite about 3 years ago
- 6 comments
Labels: data representation
#585 - Ancestral vs. derived allele
Issue -
State: open - Opened by hammer over 3 years ago
- 5 comments
#571 - Support mixed ploidy in display_genotypes
Issue -
State: closed - Opened by timothymillar over 3 years ago
- 7 comments
#347 - Add documentation on how to persist computations in a workflow
Issue -
State: open - Opened by eric-czech almost 4 years ago
- 5 comments
Labels: documentation
#309 - Add plink_to_zarr function
Issue -
State: closed - Opened by eric-czech almost 4 years ago
- 1 comment
Labels: IO
#64 - Add tskit as import format?
Issue -
State: open - Opened by jeromekelleher about 4 years ago
- 9 comments
Labels: enhancement, question, IO
#53 - Command-line interface (CLI) with plugins
Issue -
State: closed - Opened by hammer about 4 years ago
- 6 comments
Labels: IO, multi-repo, CLI