Ecosyste.ms: Issues

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GitHub / pymmcore-plus/useq-schema issues and pull requests

#166 - wip plate plan

Pull Request - State: open - Opened by tlambert03 3 days ago

#165 - ci(pre-commit.ci): autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 28 days ago

#164 - chore: remove deprecated code

Pull Request - State: closed - Opened by tlambert03 about 2 months ago

#163 - ci(dependabot): bump pyapp-kit/workflows from 1 to 2

Pull Request - State: closed - Opened by dependabot[bot] about 2 months ago
Labels: dependencies

#162 - ci(pre-commit.ci): autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 2 months ago - 1 comment

#161 - ci(pre-commit.ci): autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 3 months ago

#160 - ci(dependabot): bump softprops/action-gh-release from 1 to 2

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago - 1 comment
Labels: dependencies

#159 - ci: use reusable workflows

Pull Request - State: closed - Opened by tlambert03 4 months ago - 1 comment

#158 - ci(pre-commit.ci): autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 4 months ago - 2 comments

#157 - chore: use ruff format instead of black

Pull Request - State: closed - Opened by tlambert03 4 months ago - 1 comment

#156 - Time plans with no delay

Issue - State: open - Opened by tlambert03 4 months ago

#155 - GridPlan order issue

Issue - State: open - Opened by fdrgsp 5 months ago

#154 - ci(dependabot): bump codecov/codecov-action from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago - 1 comment
Labels: dependencies

#153 - ci(pre-commit.ci): autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 6 months ago - 1 comment

#152 - ci(dependabot): bump actions/setup-python from 4 to 5

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago - 1 comment
Labels: dependencies

#151 - fix: update docstrings grid plans

Pull Request - State: closed - Opened by fdrgsp 7 months ago - 1 comment

#150 - fix: update docstring MDASequence

Pull Request - State: closed - Opened by fdrgsp 7 months ago - 1 comment

#149 - GridPlan problems

Issue - State: closed - Opened by wl-stepp 7 months ago - 7 comments

#148 - ci(pre-commit.ci): autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 8 months ago - 1 comment

#147 - [WIP] Fix: update time interval exceeded boolean

Pull Request - State: open - Opened by fdrgsp 9 months ago - 1 comment

#146 - ci(pre-commit.ci): autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 9 months ago - 1 comment

#145 - feat: make af-device name optional

Pull Request - State: closed - Opened by tlambert03 9 months ago - 1 comment

#144 - build: block pydantic2.4.1

Pull Request - State: closed - Opened by tlambert03 9 months ago - 1 comment

#143 - failing tests on pydantic 2.4.1

Issue - State: closed - Opened by tlambert03 9 months ago

#142 - fix: valueError also if no fov in GridWidthHeight

Pull Request - State: closed - Opened by fdrgsp 9 months ago - 1 comment

#141 - Consider making autofocus_device_name optional

Issue - State: closed - Opened by tlambert03 9 months ago

#140 - refactor!: change axis_order type to `Tuple[str, ...]`

Pull Request - State: closed - Opened by tlambert03 9 months ago - 1 comment

#139 - test: add napari-micromanager test

Pull Request - State: closed - Opened by tlambert03 9 months ago - 1 comment

#138 - Todo: make axis order `Sequence[str]` not `str`

Issue - State: closed - Opened by tlambert03 9 months ago

#136 - refactor: remove __str__ method on MDASequence

Pull Request - State: closed - Opened by tlambert03 9 months ago - 1 comment

#135 - todo: remove __str__ on mdasequence

Issue - State: closed - Opened by tlambert03 9 months ago

#134 - ci(dependabot): bump actions/checkout from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 1 comment
Labels: dependencies

#133 - ci(pre-commit.ci): autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 10 months ago - 1 comment

#132 - feat: add generation of random points in grid_plan

Pull Request - State: closed - Opened by fdrgsp 10 months ago - 2 comments

#131 - Feature: add "requested destination" or other save specs?

Issue - State: open - Opened by tlambert03 11 months ago - 6 comments

#130 - feat: accept bare string for mda event channel

Pull Request - State: closed - Opened by tlambert03 11 months ago - 1 comment

#129 - feat: add GridWidthHeight

Pull Request - State: closed - Opened by tlambert03 11 months ago - 1 comment

#128 - ci(pre-commit.ci): autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 11 months ago - 1 comment

#127 - fix: fix rounding error in ZPlan num_positions estimate

Pull Request - State: closed - Opened by tlambert03 11 months ago - 1 comment

#126 - chore: remove special character from MDASequence.__str__

Pull Request - State: closed - Opened by tlambert03 11 months ago - 1 comment

#125 - refactor: remove pydantic compat module altogether

Pull Request - State: closed - Opened by tlambert03 11 months ago - 1 comment

#124 - build: use pydantic-compat library

Pull Request - State: closed - Opened by tlambert03 11 months ago - 1 comment

#122 - feat: support both pydantic1 and pydantic2

Pull Request - State: closed - Opened by tlambert03 11 months ago - 2 comments

#121 - refactor: make fov_width/fov_height mutable on GridPlans

Pull Request - State: closed - Opened by tlambert03 11 months ago - 1 comment

#120 - feat: Event modifiers [WIP]

Pull Request - State: open - Opened by tlambert03 11 months ago

#119 - feat: add `keep_shutter_open_across` to MDASequence

Pull Request - State: closed - Opened by tlambert03 11 months ago - 1 comment

#118 - refactor: move pycromanager stuff to new module, update docs a bit

Pull Request - State: closed - Opened by tlambert03 11 months ago - 1 comment

#117 - feat: add estimate of MDASequence duration, without iterating

Pull Request - State: closed - Opened by tlambert03 11 months ago - 1 comment

#116 - feat: Add FOV size to grid spec

Pull Request - State: closed - Opened by tlambert03 11 months ago - 1 comment

#115 - docs: update readme

Pull Request - State: closed - Opened by tlambert03 11 months ago - 1 comment

#114 - docs: update units of exposure in docstring to ms

Pull Request - State: closed - Opened by tlambert03 11 months ago - 1 comment

#112 - refactor: move iterator into new module

Pull Request - State: closed - Opened by tlambert03 11 months ago - 1 comment

#111 - chore: remove setup.py

Pull Request - State: closed - Opened by tlambert03 11 months ago - 1 comment

#110 - fix: fix serialization of MDAEvents

Pull Request - State: closed - Opened by tlambert03 11 months ago - 1 comment

#109 - chore: misc updates, drop python 3.7

Pull Request - State: closed - Opened by tlambert03 11 months ago - 1 comment

#108 - fix: change action type hint on MDAEvent

Pull Request - State: closed - Opened by tlambert03 11 months ago - 1 comment

#107 - feat: add `keep_shutter_open` to MDAEvent

Pull Request - State: closed - Opened by tlambert03 11 months ago

#106 - feat: add ci tests for pymmcore_widgets

Pull Request - State: closed - Opened by fdrgsp 12 months ago - 1 comment

#105 - fix: remove NoX plans from docs

Pull Request - State: closed - Opened by fdrgsp 12 months ago - 2 comments

#104 - refactor: move replace to FrozenModel

Pull Request - State: closed - Opened by tlambert03 12 months ago - 1 comment

#103 - style: add a couple rules to ruff

Pull Request - State: closed - Opened by tlambert03 12 months ago - 1 comment

#102 - refactor: Remove `NoX` plans

Pull Request - State: closed - Opened by tlambert03 12 months ago - 1 comment

#101 - feat: accept numpy arrays for list fields

Pull Request - State: closed - Opened by tlambert03 12 months ago

#100 - test: use different pattern for testing

Pull Request - State: closed - Opened by tlambert03 12 months ago - 1 comment

#99 - fix: KeyError fix in MDASequence _should_skip method

Pull Request - State: closed - Opened by fdrgsp 12 months ago - 1 comment

#98 - fix: fix inherit sequence autofocus + add tests

Pull Request - State: closed - Opened by fdrgsp 12 months ago - 4 comments

#97 - feat: add keep_shutter_open logic

Pull Request - State: closed - Opened by fdrgsp 12 months ago - 12 comments

#96 - feat: add Actions to MDA event, and add autofocus events

Pull Request - State: closed - Opened by tlambert03 12 months ago - 1 comment

#95 - refactor: Simplify subsequence

Pull Request - State: closed - Opened by tlambert03 12 months ago - 1 comment

#94 - feat: add Actions to MDAEvent

Pull Request - State: closed - Opened by fdrgsp 12 months ago - 1 comment

#93 - fix: MDASequence iter_sequence method

Pull Request - State: closed - Opened by fdrgsp 12 months ago - 1 comment

#92 - ci(pre-commit.ci): autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 12 months ago - 1 comment

#91 - feat: add Autofocus Plan

Pull Request - State: closed - Opened by fdrgsp about 1 year ago - 2 comments

#90 - ci(pre-commit.ci): autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago - 1 comment

#89 - ci(pre-commit.ci): autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago - 1 comment

#88 - fix: pin pydantic version to < 2.0

Pull Request - State: closed - Opened by fdrgsp about 1 year ago - 1 comment

#87 - ci(pre-commit.ci): autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago - 2 comments

#86 - fix: fix _check_order method

Pull Request - State: closed - Opened by fdrgsp over 1 year ago - 1 comment

#85 - fix: fix skip channel in iter_sequence + tests

Pull Request - State: closed - Opened by fdrgsp over 1 year ago - 1 comment

#84 - ci(pre-commit.ci): autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago - 1 comment

#83 - docs: Add grid to docs

Pull Request - State: closed - Opened by fdrgsp over 1 year ago - 1 comment

#82 - ci(pre-commit.ci): autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago - 1 comment

#81 - feat: add sequence to Position object + update MDASequence iter_sequence + test [WIP]

Pull Request - State: closed - Opened by fdrgsp over 1 year ago - 2 comments

#80 - fix: update GridFromCorners with top, left, bottom, right floats

Pull Request - State: closed - Opened by fdrgsp over 1 year ago - 1 comment

#79 - refactor: rename tile with grid

Pull Request - State: closed - Opened by fdrgsp over 1 year ago - 1 comment

#78 - feat: add warning on unused keys in valid object

Pull Request - State: closed - Opened by tlambert03 over 1 year ago - 1 comment

#77 - task: emit warnings on extra kwargs

Issue - State: closed - Opened by tlambert03 over 1 year ago - 1 comment

#76 - refactor: rename tile to grid

Pull Request - State: closed - Opened by fdrgsp over 1 year ago - 1 comment

#75 - feat: add different ways of ordering the grid positions

Pull Request - State: closed - Opened by fdrgsp over 1 year ago - 1 comment

#74 - fix: fix TileRelative and TileFromCorners

Pull Request - State: closed - Opened by fdrgsp over 1 year ago - 1 comment

#73 - test: speed up tests

Pull Request - State: closed - Opened by tlambert03 over 1 year ago - 1 comment

#72 - docs: Update README.md

Pull Request - State: closed - Opened by tlambert03 over 1 year ago

#71 - tests: Move serialization test data to files

Pull Request - State: closed - Opened by tlambert03 over 1 year ago - 1 comment

#70 - feat: add tile dimension

Pull Request - State: closed - Opened by fdrgsp over 1 year ago - 2 comments

#69 - ci: update precommit

Pull Request - State: closed - Opened by tlambert03 over 1 year ago - 1 comment

#68 - ci(pre-commit.ci): autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago - 1 comment

#67 - Task: grid/large-image spec

Issue - State: closed - Opened by tlambert03 over 1 year ago - 1 comment