Ecosyste.ms: Issues

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GitHub / pymmcore-plus/pymmcore-plus issues and pull requests

#279 - test: skip flaky thread tests

Pull Request - State: closed - Opened by tlambert03 11 months ago - 1 comment
Labels: tests

#278 - fix: some fixes to mmcore install on macos

Pull Request - State: closed - Opened by tlambert03 11 months ago - 1 comment

#277 - feat: add systemConfigurationFile to retrieve last config path

Pull Request - State: closed - Opened by tlambert03 11 months ago - 1 comment
Labels: enhancement

#276 - feat: support DeviceInitializationState, fix issue with microscope model

Pull Request - State: closed - Opened by tlambert03 11 months ago - 3 comments

#275 - chore: deprecate `mmcore find` in favor of `mmcore list`

Pull Request - State: closed - Opened by tlambert03 12 months ago - 1 comment

#274 - refactor: update state method on MMCorePlus

Pull Request - State: closed - Opened by tlambert03 12 months ago - 2 comments

#273 - fix: Fix propertyChanged value type for setShutterOpen

Pull Request - State: closed - Opened by tlambert03 12 months ago

#272 - feat: allow engine to modify sequence

Pull Request - State: open - Opened by tlambert03 12 months ago - 1 comment

#271 - ci(pre-commit.ci): autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 12 months ago - 1 comment

#270 - feat: autofind autofocus offset devices

Pull Request - State: closed - Opened by tlambert03 about 1 year ago - 6 comments
Labels: documentation

#269 - docs: clarify get/setZPosition in docs and update call

Pull Request - State: closed - Opened by tlambert03 about 1 year ago - 2 comments
Labels: documentation

#268 - feat: emit metadata as second argument of `sequenceStarted`

Pull Request - State: closed - Opened by tlambert03 about 1 year ago - 3 comments

#267 - feat: ImageSequenceWriter

Pull Request - State: closed - Opened by tlambert03 about 1 year ago - 9 comments
Labels: enhancement

#266 - docs: fix Documentation of events might be out of date.

Pull Request - State: closed - Opened by tlambert03 about 1 year ago - 1 comment
Labels: documentation

#265 - feat: OMETiff writer

Pull Request - State: closed - Opened by tlambert03 about 1 year ago - 5 comments
Labels: enhancement

#264 - feat: make first instance of CMMCorePlus the global instance

Pull Request - State: closed - Opened by tlambert03 about 1 year ago - 1 comment

#263 - feat: OMEZarr writer

Pull Request - State: closed - Opened by tlambert03 about 1 year ago - 7 comments
Labels: enhancement

#262 - feat: add mda thread relay

Pull Request - State: closed - Opened by tlambert03 about 1 year ago - 15 comments

#261 - Consider making the first instantiated CMMCorePlus object the global instance

Issue - State: closed - Opened by tlambert03 about 1 year ago - 1 comment

#260 - feat: add name_map to listeners_connect

Pull Request - State: closed - Opened by tlambert03 about 1 year ago - 1 comment

#259 - Documentation of events might be out of date.

Issue - State: closed - Opened by wl-stepp about 1 year ago - 1 comment

#258 - fix: don't check is_busy when updating device in model

Pull Request - State: closed - Opened by tlambert03 about 1 year ago

#257 - ci(dependabot): bump actions/checkout from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#256 - ci(pre-commit.ci): autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago - 1 comment

#255 - feat: microscope model, for building configs and in-memory representations of core

Pull Request - State: closed - Opened by tlambert03 about 1 year ago - 2 comments

#254 - feat: add keyword, CFGCommand and other enums on global strings

Pull Request - State: closed - Opened by tlambert03 about 1 year ago - 1 comment

#253 - fix: fix find micromanager bug

Pull Request - State: closed - Opened by tlambert03 about 1 year ago - 1 comment

#252 - feat: add microscope model, similar to MMStudio MicroscopeModel

Pull Request - State: closed - Opened by tlambert03 about 1 year ago - 1 comment
Labels: enhancement

#251 - feat: add getMultiROI method, bump core dep

Pull Request - State: closed - Opened by tlambert03 about 1 year ago - 1 comment

#250 - refactor: remove AvailableDevice

Pull Request - State: closed - Opened by tlambert03 about 1 year ago

#249 - docs: mark deprecated functions

Pull Request - State: closed - Opened by tlambert03 about 1 year ago - 1 comment
Labels: documentation

#248 - fix: fix a bug in saveSystemConfiguration method

Pull Request - State: closed - Opened by fdrgsp about 1 year ago - 3 comments
Labels: bug

#247 - feat: add listeners_connected utility

Pull Request - State: closed - Opened by tlambert03 about 1 year ago - 1 comment

#246 - feat: add metadata to frameready signal, add getTaggedImage

Pull Request - State: closed - Opened by tlambert03 about 1 year ago - 3 comments

#245 - docs: add pycro-manager API adapter as an educational example

Pull Request - State: closed - Opened by tlambert03 about 1 year ago - 1 comment
Labels: documentation

#244 - test: adding test and coverage

Pull Request - State: closed - Opened by tlambert03 about 1 year ago - 1 comment

#243 - docs: add migration info for pycro-manager users

Pull Request - State: closed - Opened by tlambert03 about 1 year ago - 1 comment
Labels: documentation

#242 - docs: adding acquisition engine docs

Pull Request - State: closed - Opened by tlambert03 about 1 year ago - 4 comments
Labels: documentation

#241 - ci(pre-commit.ci): autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago

#240 - build: make cli dependencies (typer and rich) optional

Pull Request - State: closed - Opened by tlambert03 about 1 year ago - 1 comment

#239 - refactor: remove loguru

Pull Request - State: closed - Opened by tlambert03 about 1 year ago - 1 comment

#238 - How should code that uses pymmcore-plus emit log messages?

Issue - State: closed - Opened by kmdouglass about 1 year ago - 13 comments

#237 - feat: implement keep shutter open for engine

Pull Request - State: closed - Opened by tlambert03 about 1 year ago - 1 comment

#236 - refactor: rename _events to _signals in Runner

Pull Request - State: closed - Opened by tlambert03 about 1 year ago

#235 - refactor: make hardware sequencing detection opt-in

Pull Request - State: closed - Opened by tlambert03 about 1 year ago

#234 - Task: make hardware sequencing opt-in

Issue - State: closed - Opened by tlambert03 about 1 year ago

#233 - bug: add warnings if devices are not found

Pull Request - State: closed - Opened by fdrgsp about 1 year ago - 2 comments

#232 - Task: add signal blocker

Issue - State: open - Opened by tlambert03 about 1 year ago

#231 - feat: use new fov on useq grid objects, support pydantic2

Pull Request - State: closed - Opened by tlambert03 about 1 year ago - 1 comment

#230 - test: don't test private attribute of useq

Pull Request - State: closed - Opened by tlambert03 about 1 year ago
Labels: tests

#229 - Task: rename `.events` to `.signals` globally

Issue - State: open - Opened by tlambert03 about 1 year ago

#228 - fix: fix payload for sequenced objects

Pull Request - State: closed - Opened by tlambert03 about 1 year ago - 1 comment

#227 - feat: add attribute to control hardware sequencing

Pull Request - State: closed - Opened by tlambert03 about 1 year ago - 1 comment

#226 - Task: Catch case of missing autofocus device

Issue - State: closed - Opened by tlambert03 about 1 year ago
Labels: bug

#225 - fix: fix bug in sequencing

Pull Request - State: closed - Opened by tlambert03 about 1 year ago - 1 comment

#224 - chore: miscellaneous build and linting updates

Pull Request - State: closed - Opened by tlambert03 about 1 year ago - 1 comment

#223 - perf: Pop images from circular buffer during sequence

Pull Request - State: closed - Opened by tlambert03 about 1 year ago - 1 comment

#222 - Task: pass cancel command from runner to engine

Issue - State: open - Opened by tlambert03 about 1 year ago

#221 - ci: test napari-micromanager

Pull Request - State: closed - Opened by tlambert03 about 1 year ago

#220 - Task: emit metadata along with images during mda

Issue - State: closed - Opened by tlambert03 about 1 year ago

#219 - feat: add logging to file and cli command

Pull Request - State: closed - Opened by tlambert03 about 1 year ago - 4 comments
Labels: documentation

#218 - feat: add MMCorePlus.describe method

Pull Request - State: closed - Opened by tlambert03 about 1 year ago - 1 comment

#217 - TODO: document logging

Issue - State: closed - Opened by tlambert03 about 1 year ago - 1 comment

#216 - docs: fix docs build

Pull Request - State: closed - Opened by tlambert03 about 1 year ago
Labels: documentation

#215 - Add set_mda to use custom MDARunner

Pull Request - State: closed - Opened by wl-stepp about 1 year ago - 11 comments

#214 - feat:update saveSystemConfiguration method

Pull Request - State: closed - Opened by fdrgsp about 1 year ago - 1 comment
Labels: enhancement

#213 - feat: add Adapter object

Pull Request - State: closed - Opened by tlambert03 about 1 year ago - 1 comment

#212 - refactor: move loadDevice logic from Device to MMCorePlus

Pull Request - State: closed - Opened by tlambert03 about 1 year ago - 1 comment

#211 - fix: don't use invalid plans in test

Pull Request - State: closed - Opened by tlambert03 about 1 year ago

#210 - should `MDAEngine` be calling `getImage()`?

Issue - State: open - Opened by tlambert03 about 1 year ago - 2 comments

#209 - fix doc

Pull Request - State: closed - Opened by tlambert03 about 1 year ago

#208 - refactor: Remove remote feature

Pull Request - State: closed - Opened by tlambert03 about 1 year ago - 1 comment

#207 - feat: add general retry utility

Pull Request - State: closed - Opened by tlambert03 about 1 year ago - 3 comments

#206 - feat: Add support for hardware sequencing

Pull Request - State: closed - Opened by tlambert03 about 1 year ago - 4 comments

#205 - refactor: relax signature of `MDARunner.run` to `Iterable[MDAEvent]`

Pull Request - State: closed - Opened by tlambert03 about 1 year ago - 2 comments

#204 - feat: update engine with autofocus using user Action

Pull Request - State: closed - Opened by fdrgsp about 1 year ago - 1 comment
Labels: bug, documentation, enhancement

#203 - test: use PyQt6 for testing

Pull Request - State: closed - Opened by fdrgsp about 1 year ago

#202 - feat: add build-dev command to build dev dependencies on apple silicon

Pull Request - State: closed - Opened by tlambert03 about 1 year ago - 2 comments

#201 - Update contributing.md

Pull Request - State: closed - Opened by tlambert03 about 1 year ago

#200 - ci(pre-commit.ci): autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago

#199 - [WIP] feat: add autofocus logic to the engine

Pull Request - State: closed - Opened by fdrgsp over 1 year ago - 1 comment

#198 - feat: set sequence fov size in engine setup_sequence + add test

Pull Request - State: closed - Opened by fdrgsp over 1 year ago - 3 comments
Labels: enhancement

#197 - fix: fix snap emission events

Pull Request - State: closed - Opened by tlambert03 over 1 year ago - 1 comment

#196 - ci(pre-commit.ci): autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago - 1 comment
Labels: hide

#195 - test: fix scope of ignore warning on test

Pull Request - State: closed - Opened by tlambert03 over 1 year ago

#194 - ci(pre-commit.ci): autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago
Labels: hide

#193 - fix: fix for loguru 0.7.0

Pull Request - State: closed - Opened by tlambert03 over 1 year ago - 1 comment

#192 - ci(pre-commit.ci): autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago - 1 comment
Labels: bug, hide

#191 - ci(pre-commit.ci): autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago - 1 comment
Labels: hide

#190 - `run_mda` docstring slightly wrong

Issue - State: closed - Opened by ianhi over 1 year ago

#189 - Should `MDARunner` manage an `io` thread for usage by anything writing to disk?

Issue - State: closed - Opened by ianhi over 1 year ago - 3 comments

#188 - docs: fix links

Pull Request - State: closed - Opened by tlambert03 over 1 year ago - 1 comment
Labels: documentation

#187 - Some readme.md links are bad

Issue - State: closed - Opened by HazenBabcock over 1 year ago - 1 comment

#186 - ci(pre-commit.ci): autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago - 1 comment
Labels: hide

#185 - fix: small fix in get state

Pull Request - State: closed - Opened by tlambert03 over 1 year ago - 1 comment

#184 - style: update pre-commit

Pull Request - State: closed - Opened by tlambert03 over 1 year ago - 1 comment

#183 - fix: update for newest micromanager demo cfg

Pull Request - State: closed - Opened by fdrgsp over 1 year ago
Labels: bug

#182 - feat: add propertyChanged to setFocusDevice method + test

Pull Request - State: closed - Opened by fdrgsp over 1 year ago - 1 comment
Labels: enhancement

#181 - ci(pre-commit.ci): autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago - 2 comments

#180 - feat: emit channelGroupChanged signal when calling setChannelGroup

Pull Request - State: closed - Opened by fdrgsp almost 2 years ago - 3 comments
Labels: enhancement