Ecosyste.ms: Issues

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GitHub / pymmcore-plus/pymmcore-plus issues and pull requests

#383 - feat: add support for MDAEvent.reset_event_timer

Pull Request - State: closed - Opened by tlambert03 about 1 month ago - 2 comments
Labels: enhancement

#382 - ci: test python 3.13

Pull Request - State: open - Opened by tlambert03 about 1 month ago - 2 comments

#381 - chore: fix typing on Signal.disconnect protocol

Pull Request - State: closed - Opened by tlambert03 about 1 month ago - 2 comments

#380 - TODO: implement support for useq reset_event_timer=True

Issue - State: closed - Opened by tlambert03 about 2 months ago

#379 - Acquisition stops temporarily while it catches up with frames

Issue - State: open - Opened by simonecoppola about 2 months ago - 13 comments

#378 - fix: serialization of GridPlan in ome-zarr writer when msgspec is not installed

Pull Request - State: closed - Opened by tlambert03 about 2 months ago - 3 comments
Labels: bug

#377 - build: drop python 3.8

Pull Request - State: closed - Opened by tlambert03 about 2 months ago - 2 comments

#376 - State of writers for MultiCamera acquisitions

Issue - State: open - Opened by wl-stepp about 2 months ago - 4 comments

#375 - Not able to write ome-zarr without msgspec

Issue - State: closed - Opened by wl-stepp about 2 months ago - 5 comments

#374 - ci(pre-commit.ci): autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 3 months ago - 2 comments

#373 - feat: enable hardware sequencing by default

Pull Request - State: closed - Opened by tlambert03 3 months ago - 2 comments
Labels: enhancement

#372 - ci(pre-commit.ci): autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 3 months ago - 2 comments

#371 - ci(dependabot): bump CodSpeedHQ/action from 2 to 3

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago - 1 comment
Labels: dependencies

#370 - docs: fix typos etc.

Pull Request - State: closed - Opened by marktsuchida 4 months ago - 1 comment
Labels: bug, documentation

#369 - docs: document cli

Pull Request - State: closed - Opened by tlambert03 4 months ago - 2 comments
Labels: documentation

#368 - feat: add `mmcore use` to set the active micro-manager installation

Pull Request - State: closed - Opened by tlambert03 4 months ago - 2 comments
Labels: enhancement

#367 - feat: enable StrictInitializationChecks

Pull Request - State: closed - Opened by tlambert03 5 months ago - 2 comments
Labels: enhancement

#366 - refactor: use only pydantic2 syntax

Pull Request - State: closed - Opened by tlambert03 5 months ago - 3 comments

#365 - feat: guard against premature call to getInstalledDevices

Pull Request - State: closed - Opened by tlambert03 5 months ago - 3 comments
Labels: enhancement

#364 - ci(pre-commit.ci): autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 5 months ago - 2 comments

#363 - perf: benchmark metadata

Pull Request - State: closed - Opened by tlambert03 5 months ago - 1 comment

#362 - refactor: remove state and move metadata

Pull Request - State: closed - Opened by tlambert03 5 months ago - 2 comments

#361 - fix: fix failure to collect elapsed time during sequenced acquisition

Pull Request - State: closed - Opened by tlambert03 5 months ago - 2 comments
Labels: bug

#360 - docs: deploy docs preview

Pull Request - State: closed - Opened by tlambert03 5 months ago - 1 comment
Labels: documentation

#359 - feat: create Microscope (model) from summary metadata

Pull Request - State: closed - Opened by tlambert03 5 months ago - 2 comments
Labels: enhancement

#358 - feat: Formalize schema for metadata used by MDA (and elsewhere)

Pull Request - State: closed - Opened by tlambert03 5 months ago - 15 comments
Labels: documentation, enhancement

#357 - feat: make CMMCoreSignaler and MDASignaler signal groups

Pull Request - State: closed - Opened by tlambert03 5 months ago - 2 comments
Labels: enhancement

#356 - fix: fix setup sequence

Pull Request - State: closed - Opened by tlambert03 5 months ago - 2 comments
Labels: bug

#355 - feat: add the tensorstore option to the MDARunner

Pull Request - State: closed - Opened by fdrgsp 6 months ago - 3 comments

#354 - ci(pre-commit.ci): autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 6 months ago - 2 comments

#353 - fix: add stopPropertySequence before loadPropertySequence in setup_sequenced_event

Pull Request - State: closed - Opened by tlambert03 6 months ago - 9 comments
Labels: bug

#351 - feat: formalizing metadata during MDA

Pull Request - State: closed - Opened by tlambert03 6 months ago - 3 comments
Labels: bug, enhancement

#350 - discussion: metadata schema during MDA

Issue - State: closed - Opened by tlambert03 6 months ago - 5 comments

#349 - feat: save ome-tiff files in a folder if multi-position

Pull Request - State: open - Opened by fdrgsp 6 months ago - 2 comments

#348 - feat: add tensorstore writer

Pull Request - State: closed - Opened by tlambert03 6 months ago - 3 comments
Labels: enhancement

#347 - ci: pre-commit update

Pull Request - State: closed - Opened by tlambert03 6 months ago - 2 comments

#346 - ci(pre-commit.ci): autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 7 months ago

#345 - fix: fixing tests and better auto-qt detection

Pull Request - State: closed - Opened by tlambert03 7 months ago - 2 comments
Labels: bug

#343 - [WIP] feat: add support for Micro-Manager Multi Camera Utilities

Pull Request - State: closed - Opened by fdrgsp 7 months ago - 8 comments

#342 - make t0 of MDARunner more accessible

Issue - State: closed - Opened by tlambert03 7 months ago - 1 comment

#341 - ci(pre-commit.ci): autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 8 months ago - 3 comments

#340 - ci(dependabot): bump softprops/action-gh-release from 1 to 2

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago - 1 comment
Labels: documentation, dependencies

#339 - feat: [WIP] PyDevice concept and experimenting with acquire-imaging

Pull Request - State: open - Opened by tlambert03 9 months ago - 1 comment

#338 - ci: use pyapp-kit workflows for dependency tests

Pull Request - State: closed - Opened by tlambert03 9 months ago - 2 comments
Labels: bug

#337 - fix: Fix pyside2 issue when disconnecting listeners_connected

Pull Request - State: closed - Opened by tlambert03 9 months ago - 2 comments
Labels: bug

#336 - feat: use event.pos_name when saving the files with tiff and zarr writers

Pull Request - State: closed - Opened by fdrgsp 9 months ago - 2 comments

#335 - chore: use ruff format instead of black

Pull Request - State: closed - Opened by tlambert03 9 months ago - 1 comment

#334 - Bug: disconnect signature on PySide2

Issue - State: closed - Opened by tlambert03 9 months ago

#333 - ci: cache built drivers for all platforms

Pull Request - State: closed - Opened by tlambert03 9 months ago

#332 - test: allow testing without Qt installed

Pull Request - State: closed - Opened by tlambert03 9 months ago

#331 - feat: support linux on `mmcore build-dev`, test on linux, make device list editable

Pull Request - State: closed - Opened by tlambert03 9 months ago - 3 comments

#330 - perf: add benchmarks

Pull Request - State: closed - Opened by tlambert03 9 months ago - 1 comment

#329 - chore: misc dependency updates

Pull Request - State: closed - Opened by tlambert03 9 months ago - 1 comment

#328 - feat: add `mmcore info` command

Pull Request - State: closed - Opened by tlambert03 9 months ago - 1 comment
Labels: enhancement

#327 - fix: remove zarr dependency

Pull Request - State: closed - Opened by tlambert03 9 months ago - 1 comment
Labels: bug

#326 - fix: re-engage hardware autofocus after performing autofocus action if it was engaged

Pull Request - State: closed - Opened by fdrgsp 9 months ago - 2 comments
Labels: bug

#325 - ci(dependabot): bump codecov/codecov-action from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 1 comment
Labels: documentation, dependencies

#324 - ci(pre-commit.ci): autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 10 months ago - 1 comment

#323 - feat: support basic ImageJ hyperstack

Pull Request - State: closed - Opened by tlambert03 10 months ago - 1 comment
Labels: enhancement

#322 - Task: update docs dependencies

Issue - State: open - Opened by tlambert03 10 months ago

#321 - feat: control signal backend with MMCORE_PLUS_SIGNALS_BACKEND

Pull Request - State: closed - Opened by tlambert03 10 months ago - 1 comment
Labels: enhancement

#320 - chore: remove deprecated stuff for next version bump

Pull Request - State: closed - Opened by tlambert03 10 months ago

#319 - feat: add post_sequence_started

Pull Request - State: closed - Opened by tlambert03 10 months ago - 1 comment
Labels: enhancement

#318 - towards using external trigger as master

Issue - State: closed - Opened by linshaova 10 months ago - 17 comments

#317 - fix: fix autofocus z_correction delta

Pull Request - State: closed - Opened by fdrgsp 10 months ago - 1 comment
Labels: bug

#316 - feat: new runner signals `awaitingEvent` and `eventStarted`

Pull Request - State: closed - Opened by tlambert03 10 months ago - 1 comment
Labels: enhancement

#315 - fix: only allow 'AcquireImage' Actions (or None) to be sequenced

Pull Request - State: closed - Opened by fdrgsp 10 months ago - 3 comments
Labels: bug

#314 - refactor: move imageSnapped event

Pull Request - State: closed - Opened by tlambert03 10 months ago - 3 comments

#313 - feat: Add file saving `output` argument to MDARunner.run

Pull Request - State: closed - Opened by tlambert03 10 months ago - 2 comments
Labels: enhancement

#312 - refactor!: more minimal, and overridable MDA metadata

Pull Request - State: closed - Opened by tlambert03 10 months ago - 3 comments

#311 - Request for opinions on data-saving APIs

Issue - State: closed - Opened by tlambert03 10 months ago - 5 comments
Labels: enhancement, question

#310 - feat: add SequenceTester to apple silicon build-dev

Pull Request - State: closed - Opened by tlambert03 10 months ago - 2 comments

#309 - fix: fix available peripherals for libraries with multiple hubs

Pull Request - State: closed - Opened by tlambert03 10 months ago - 3 comments
Labels: bug

#308 - fix: fix available_peripherals for loaded hub devices

Pull Request - State: closed - Opened by tlambert03 10 months ago - 3 comments
Labels: bug

#307 - fix: avoid hardware errors while running sequences with NIDAQ stages

Pull Request - State: closed - Opened by tlambert03 10 months ago - 1 comment

#306 - repeating hardware triggering causes error in device

Issue - State: closed - Opened by tlambert03 10 months ago - 5 comments

#305 - fix: fix excess reading of frame metadata in OMEZarrWriter

Pull Request - State: closed - Opened by wl-stepp 11 months ago - 5 comments
Labels: bug

#304 - ci(pre-commit.ci): autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 11 months ago

#303 - OME Zarr writer doesn't fail gracefully with GeneratorMDASequence

Issue - State: open - Opened by tlambert03 11 months ago
Labels: bug

#302 - fix: Zarr part mda

Pull Request - State: closed - Opened by wl-stepp 11 months ago - 4 comments
Labels: bug

#301 - fix: fix available version lookup on windows

Pull Request - State: closed - Opened by tlambert03 11 months ago - 1 comment
Labels: bug

#300 - mmcore install specific release

Issue - State: closed - Opened by wl-stepp 11 months ago - 4 comments
Labels: bug

#299 - feat: update OMEZarrWriter to position-specific sub-MDAsequences

Pull Request - State: closed - Opened by fdrgsp 11 months ago - 5 comments
Labels: bug, documentation, enhancement

#298 - ci(dependabot): bump actions/setup-python from 4 to 5

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago - 1 comment
Labels: documentation, dependencies

#297 - docs: minor update

Pull Request - State: closed - Opened by fdrgsp 12 months ago - 4 comments
Labels: bug, documentation

#296 - feat: Add basic msgpack decoding for images from SequenceTester

Pull Request - State: closed - Opened by tlambert03 12 months ago - 1 comment
Labels: enhancement

#295 - feat: ensure stage signals

Pull Request - State: open - Opened by wl-stepp 12 months ago - 10 comments

#294 - ci(pre-commit.ci): autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 12 months ago - 1 comment

#293 - fix: trying to fix windows tests

Pull Request - State: closed - Opened by tlambert03 12 months ago - 2 comments

#292 - fix: remove alpha on rgb images

Pull Request - State: closed - Opened by tlambert03 12 months ago - 1 comment

#291 - drop alpha from getImage

Issue - State: closed - Opened by tlambert03 12 months ago

#290 - refactor: change exec_events to iterable

Pull Request - State: closed - Opened by tlambert03 12 months ago - 1 comment

#289 - Custom engine with sequenced acquisitions

Issue - State: open - Opened by dpshepherd 12 months ago - 6 comments

#288 - Missing XYStagePositionChanged event

Issue - State: open - Opened by wl-stepp 12 months ago - 9 comments

#287 - fix: subclass apply_to_core method for PixelSizeGroup in model

Pull Request - State: closed - Opened by fdrgsp about 1 year ago - 1 comment
Labels: bug

#286 - Remove terminal output when discovering available devices

Issue - State: closed - Opened by felixwanitschke about 1 year ago - 5 comments

#285 - ci(pre-commit.ci): autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago - 1 comment