Ecosyste.ms: Issues

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GitHub / pymmcore-plus/napari-micromanager issues and pull requests

#234 - refactor: big cleanup of MDAHandler logic

Pull Request - State: closed - Opened by tlambert03 over 1 year ago - 1 comment

#233 - refactor: pull minmax logic off main window, and reduce minmax widget layout logic

Pull Request - State: closed - Opened by tlambert03 over 1 year ago - 1 comment

#232 - refactor: dedup save logic from explorer and mda

Pull Request - State: closed - Opened by tlambert03 over 1 year ago - 1 comment

#231 - refactor: pull out mda handling logic into MDAHandler object

Pull Request - State: closed - Opened by tlambert03 over 1 year ago - 2 comments

#230 - test: add `mda_sequence` parametrized fixture

Pull Request - State: closed - Opened by tlambert03 over 1 year ago - 1 comment

#229 - refactor: remove event_indices function (use useq.used_axes)

Pull Request - State: closed - Opened by tlambert03 over 1 year ago - 1 comment

#228 - build: bump core dependency

Pull Request - State: closed - Opened by tlambert03 over 1 year ago - 1 comment

#227 - refactor: use properties widget from pymmcore-widgets for illum widget

Pull Request - State: closed - Opened by tlambert03 over 1 year ago - 1 comment

#226 - refactor: cleanup connections in MainWindow

Pull Request - State: closed - Opened by tlambert03 over 1 year ago - 1 comment

#225 - feat: add scale to layers

Pull Request - State: closed - Opened by fdrgsp over 1 year ago - 1 comment

#224 - Remove SEQUENCE_META dict

Pull Request - State: closed - Opened by tlambert03 over 1 year ago - 1 comment

#223 - feat: add napari-micromanager command prompt

Pull Request - State: closed - Opened by tlambert03 over 1 year ago - 1 comment

#222 - fix: make sure toolbar is always on top

Pull Request - State: closed - Opened by tlambert03 over 1 year ago - 2 comments

#221 - feat: replace menu with QToolBar

Pull Request - State: closed - Opened by fdrgsp over 1 year ago - 7 comments

#220 - ci: enable strict mypy

Pull Request - State: closed - Opened by tlambert03 over 1 year ago - 1 comment

#218 - style: use ruff for linter

Pull Request - State: closed - Opened by tlambert03 over 1 year ago - 1 comment

#217 - feat: add widgets as QtViewerDockWidget

Pull Request - State: closed - Opened by fdrgsp over 1 year ago - 12 comments

#216 - fix: fix self._prop_browser args

Pull Request - State: closed - Opened by fdrgsp over 1 year ago - 1 comment

#215 - feat: use all pymmcore-widgets

Pull Request - State: closed - Opened by fdrgsp over 1 year ago - 1 comment

#214 - [WIP] feat: new GUI with all pymmcore-widgets

Pull Request - State: closed - Opened by fdrgsp over 1 year ago - 4 comments

#208 - fix: unpin mac micromanager version in test

Pull Request - State: closed - Opened by fdrgsp over 1 year ago

#204 - core.waitForSystem() doesn't seem to be waiting

Issue - State: closed - Opened by CedricEsp over 1 year ago - 6 comments

#200 - feat: add ROI camera widget fro pymmcore_widget

Pull Request - State: closed - Opened by fdrgsp almost 2 years ago - 1 comment

#199 - Shutters and channel setting

Issue - State: closed - Opened by MasafumiTsuboi almost 2 years ago - 6 comments

#194 - refactor: use pymmcore-widgets and fix tests

Pull Request - State: closed - Opened by fdrgsp almost 2 years ago - 1 comment

#190 - Stage start moving before stage up to load position

Issue - State: closed - Opened by CedricEsp almost 2 years ago - 4 comments

#189 - Stop "live acquisition"

Issue - State: closed - Opened by CedricEsp almost 2 years ago - 2 comments

#188 - refactor: use pymmcore-widgets

Pull Request - State: closed - Opened by tlambert03 almost 2 years ago - 2 comments

#187 - chore: update links to new org

Pull Request - State: closed - Opened by tlambert03 almost 2 years ago - 1 comment

#186 - Linux Support

Issue - State: closed - Opened by RileyMShea almost 2 years ago - 5 comments

#180 - [WIP]MDA to Sample Explorer

Pull Request - State: closed - Opened by fdrgsp about 2 years ago - 9 comments

#179 - Sample explorer with z stack + multiple points

Issue - State: closed - Opened by CedricEsp about 2 years ago - 36 comments

#178 - Napari + Napari Micromanager plugin too large for my screen

Issue - State: closed - Opened by CedricEsp about 2 years ago - 5 comments

#171 - easy fix to the stage collapsible that is not closing properly

Pull Request - State: closed - Opened by fdrgsp about 2 years ago - 1 comment

#169 - refactor: Replace MDA .ui gui file with .py

Pull Request - State: closed - Opened by fdrgsp about 2 years ago - 1 comment

#168 - Replace Explorer .ui gui file with .py

Pull Request - State: closed - Opened by fdrgsp about 2 years ago - 1 comment

#167 - add ToolTip to any preset widget

Pull Request - State: closed - Opened by fdrgsp about 2 years ago - 1 comment

#166 - fix DefaultCameraExposureWidget widgets layout

Pull Request - State: closed - Opened by fdrgsp about 2 years ago - 1 comment

#165 - minor explorer fix/update

Pull Request - State: closed - Opened by fdrgsp about 2 years ago - 1 comment

#164 - minor update _presets_widget.py

Pull Request - State: closed - Opened by fdrgsp about 2 years ago - 3 comments

#163 - Minor change in _presets_widget.py

Pull Request - State: closed - Opened by fdrgsp about 2 years ago - 1 comment

#161 - General shutter widget

Pull Request - State: closed - Opened by fdrgsp about 2 years ago - 4 comments

#148 - feat: Live mode button widget

Pull Request - State: closed - Opened by fdrgsp over 2 years ago - 4 comments

#147 - Snap button widget

Pull Request - State: closed - Opened by fdrgsp over 2 years ago - 8 comments

#144 - Channel widget

Pull Request - State: closed - Opened by fdrgsp over 2 years ago - 1 comment

#141 - Add a widget to create pixel size configurations

Pull Request - State: closed - Opened by fdrgsp over 2 years ago - 13 comments

#140 - Change what is displayed when no devices are loaded

Issue - State: open - Opened by ianhi over 2 years ago - 1 comment

#136 - pixelSizeConfiguration considerations

Issue - State: closed - Opened by tlambert03 over 2 years ago - 4 comments

#135 - Set pixel size when equal to 1

Pull Request - State: closed - Opened by ianhi over 2 years ago - 6 comments

#133 - Move SequenceMETA in useq?

Issue - State: closed - Opened by ianhi over 2 years ago - 3 comments

#130 - Update for new pymmcore-plus mda interface

Issue - State: closed - Opened by tlambert03 over 2 years ago - 6 comments
Labels: awaiting response

#128 - Generic PresetWidget

Pull Request - State: closed - Opened by fdrgsp over 2 years ago - 19 comments

#127 - Fixes for live mode

Issue - State: closed - Opened by ianhi over 2 years ago - 4 comments

#122 - feat: add group and preset table widget

Pull Request - State: closed - Opened by fdrgsp over 2 years ago - 4 comments

#121 - Proposal: Aim for an independent pymmcore-widgets package, use it here

Issue - State: closed - Opened by tlambert03 over 2 years ago - 7 comments
Labels: task

#116 - Move multi_d_widget into `_gui_elements`

Issue - State: closed - Opened by ianhi over 2 years ago - 1 comment

#112 - GUI is disabled when opened programmatically

Issue - State: closed - Opened by ianhi over 2 years ago - 4 comments

#111 - Feature freeze

Issue - State: closed - Opened by tlambert03 over 2 years ago - 1 comment
Labels: task

#107 - Add superqt QCollapsibles to the gui

Pull Request - State: closed - Opened by fdrgsp over 2 years ago - 8 comments

#105 - [WIP] Add autofocus device control

Pull Request - State: closed - Opened by fdrgsp over 2 years ago - 5 comments

#104 - napari reset view in explorer

Pull Request - State: closed - Opened by fdrgsp over 2 years ago - 2 comments

#102 - fixes if no xy and/or z stage

Pull Request - State: closed - Opened by fdrgsp over 2 years ago - 1 comment

#101 - fix setCheckState in mda using Qt.CheckState

Pull Request - State: closed - Opened by fdrgsp over 2 years ago - 2 comments

#99 - Disable xyz stage if there is not a xyz device

Pull Request - State: closed - Opened by fdrgsp over 2 years ago - 16 comments

#97 - pycro-manager backend

Issue - State: closed - Opened by henrypinkard over 2 years ago - 32 comments
Labels: enhancement

#96 - Add `main_window_events` + Cycle through channels when adding to MDA

Pull Request - State: closed - Opened by ianhi over 2 years ago - 2 comments

#90 - Make the gui easier to modify by splitting the main widget in multiple sub-widgets

Pull Request - State: closed - Opened by fdrgsp over 2 years ago - 12 comments

#88 - icons do not show up when starting napari with plugin from command line

Issue - State: closed - Opened by ptbrown1729 over 2 years ago - 12 comments
Labels: bug

#82 - set channel group using new getOrGuessChannelGroup() method from pymmcore-plus

Pull Request - State: closed - Opened by fdrgsp over 2 years ago - 1 comment

#81 - add z_stack options

Pull Request - State: closed - Opened by fdrgsp over 2 years ago - 2 comments

#79 - Exposure Updates: more regular refresh + a cache

Pull Request - State: closed - Opened by ianhi over 2 years ago - 10 comments

#78 - Generalize (or hide) the autofocus up/down

Issue - State: closed - Opened by ianhi over 2 years ago - 3 comments

#73 - Prevent from manual editing the cells from the property browser table

Pull Request - State: closed - Opened by fdrgsp over 2 years ago - 3 comments

#70 - Setup error in loading MM config file

Issue - State: closed - Opened by jacopoabramo over 2 years ago - 7 comments

#69 - Add tests for the explorer tab widget

Pull Request - State: closed - Opened by fdrgsp over 2 years ago - 1 comment

#68 - updated gui

Pull Request - State: closed - Opened by fdrgsp over 2 years ago - 1 comment

#66 - Display max and min values of active layer/image

Pull Request - State: closed - Opened by fdrgsp over 2 years ago - 2 comments

#61 - replace focus device label with getFocusDevice()

Pull Request - State: closed - Opened by fdrgsp almost 3 years ago - 1 comment

#59 - update tests explorer

Pull Request - State: closed - Opened by fdrgsp almost 3 years ago - 1 comment

#58 - add property browser button to the gui

Pull Request - State: closed - Opened by fdrgsp almost 3 years ago - 2 comments

#56 - add button to create a widget to control illumination devices

Pull Request - State: closed - Opened by fdrgsp almost 3 years ago - 4 comments

#55 - crop camera sensor using napari shape layer

Pull Request - State: closed - Opened by fdrgsp almost 3 years ago - 2 comments

#50 - "snap on click" checkbox for xyz control buttons

Pull Request - State: closed - Opened by fdrgsp almost 3 years ago - 2 comments

#44 - Create a tab for handling arbitrary config groups

Issue - State: closed - Opened by ianhi almost 3 years ago - 3 comments

#43 - get objective device and check if there is a configuration group

Pull Request - State: closed - Opened by fdrgsp almost 3 years ago - 9 comments

#39 - move the xystage back to the starting position when the explorer scan is finished

Pull Request - State: closed - Opened by fdrgsp almost 3 years ago - 3 comments

#36 - remove image xy translation when snap

Pull Request - State: closed - Opened by fdrgsp almost 3 years ago - 1 comment

#34 - Improve Live mode

Issue - State: closed - Opened by ianhi almost 3 years ago - 4 comments

#29 - Allow for multiple focus devices

Issue - State: closed - Opened by ianhi almost 3 years ago - 1 comment

#17 - MDA and Sample Explorer tabs - work in progress

Pull Request - State: closed - Opened by fdrgsp about 3 years ago - 5 comments

#16 - Add options for individual positions and individual channels

Pull Request - State: closed - Opened by fdrgsp about 3 years ago

#15 - add option to save xy positions in a separate file

Pull Request - State: closed - Opened by fdrgsp about 3 years ago

#13 - Add save temp images and final stack

Pull Request - State: closed - Opened by fdrgsp about 3 years ago - 3 comments

#12 - Add frames received from `run_mda` to viewer

Pull Request - State: closed - Opened by fdrgsp about 3 years ago - 1 comment