Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / pykale/pykale issues and pull requests

#446 - Integrate DrugBAN example to PyKale -- Lightning Version

Pull Request - State: open - Opened by jiayang-zhang 10 days ago - 1 comment
Labels: new feature

#445 - Pin torch to 2.3.0

Pull Request - State: closed - Opened by jiayang-zhang 16 days ago - 1 comment
Labels: bug

#444 - 443 Fix Scheduled Test OSError

Pull Request - State: closed - Opened by xianyuanliu about 1 month ago
Labels: bug

#443 - A scheduled test failed - OSError

Issue - State: closed - Opened by xianyuanliu about 1 month ago - 1 comment
Labels: action failed

#442 - Integrate DrugBAN example to PyKale -- PyTorch Version

Pull Request - State: open - Opened by jiayang-zhang about 2 months ago - 1 comment
Labels: new feature

#441 - 402 refactor merge modules losses distance and metrics to one

Pull Request - State: closed - Opened by shuo-zhou 3 months ago
Labels: refactor

#440 - Support Codecov, Action Cache, Action Checkout v4 & Setup-miniconda v3

Pull Request - State: closed - Opened by xianyuanliu 3 months ago
Labels: refactor

#439 - Update Actions Caches and Set Numpy below 2.0.0

Pull Request - State: closed - Opened by xianyuanliu 3 months ago - 1 comment
Labels: refactor

#438 - Upgrade to support Numpy 2.0.0+ and Matplotlib 3.9.1+

Pull Request - State: open - Opened by xianyuanliu 3 months ago - 2 comments
Labels: refactor, work-in-progress

#437 - Add mida_trainer pipeline

Pull Request - State: open - Opened by shuo-zhou 3 months ago - 3 comments
Labels: new feature

#436 - Fix bugs of greek letters in docstring.

Pull Request - State: closed - Opened by wenruifan 4 months ago - 1 comment
Labels: documentation

#435 - Fix bugs of greek letters in docstring.

Pull Request - State: closed - Opened by wenruifan 4 months ago
Labels: documentation

#434 - Fix bugs of greek letters in docstring.

Pull Request - State: closed - Opened by wenruifan 4 months ago - 1 comment
Labels: documentation

#433 - Fix bugs of greek letters in docstring.

Pull Request - State: closed - Opened by wenruifan 4 months ago - 2 comments
Labels: documentation

#432 - Refine test Readme

Pull Request - State: closed - Opened by xianyuanliu 9 months ago - 2 comments
Labels: documentation

#431 - draft: Minimal tmnet installation.

Pull Request - State: closed - Opened by tarpas 10 months ago - 1 comment

#430 - Use a softer matching strategy for caching downloaded pip dependencies

Pull Request - State: closed - Opened by xianyuanliu 10 months ago - 1 comment
Labels: refactor

#429 - Cache preload data

Pull Request - State: closed - Opened by wang-hlin 10 months ago - 1 comment
Labels: refactor

#428 - [Refactor] Modifying add_protonet PR to align with the demo data download separation.

Issue - State: closed - Opened by wenruifan 10 months ago - 5 comments
Labels: refactor

#427 - Cache downloaded pip dependencies

Pull Request - State: closed - Opened by wang-hlin 10 months ago - 2 comments

#426 - Refactor documentation and resolve module visibility issues

Pull Request - State: closed - Opened by xianyuanliu 10 months ago - 1 comment
Labels: refactor

#425 - Module visibility issues

Issue - State: closed - Opened by xianyuanliu 11 months ago
Labels: documentation

#424 - Split the test data downloading and test cases

Pull Request - State: closed - Opened by wang-hlin 11 months ago - 1 comment

#423 - Update the default checkpoint (ckpt) resume and test file name to None

Pull Request - State: closed - Opened by xianyuanliu 11 months ago - 1 comment
Labels: bug

#422 - Upgrade flack8

Pull Request - State: closed - Opened by xianyuanliu 11 months ago - 1 comment
Labels: refactor

#421 - Upgrade black

Pull Request - State: closed - Opened by xianyuanliu 11 months ago - 1 comment
Labels: refactor

#420 - Upgrade mirrors-mypy and isort

Pull Request - State: closed - Opened by xianyuanliu 11 months ago - 1 comment
Labels: bug

#419 - [Refactor] GitHub actions caching

Issue - State: closed - Opened by wang-hlin 11 months ago - 1 comment
Labels: refactor

#418 - Incorrect loss and accuracy found in the digit_dann example

Issue - State: open - Opened by xianyuanliu 12 months ago
Labels: bug

#417 - Add resume and test checkpoint loading to main.py in example/cifas_cn…

Pull Request - State: closed - Opened by wenruifan 12 months ago - 1 comment

#416 - [Feature Request] Optimizing functional test time with pytest-testmon

Issue - State: closed - Opened by xianyuanliu 12 months ago - 1 comment

#415 - Change testing data directory paths

Pull Request - State: closed - Opened by wang-hlin 12 months ago - 2 comments

#414 - Change testing data directory paths

Pull Request - State: closed - Opened by wang-hlin 12 months ago

#413 - Add testmon in pytest

Pull Request - State: open - Opened by xianyuanliu 12 months ago - 8 comments
Labels: refactor, work-in-progress, enable-test-changed-only

#412 - [Bug] Testing data is downloaded into different directory paths

Issue - State: closed - Opened by xianyuanliu 12 months ago
Labels: bug

#411 - [Refactor] Let one config file contain all hyperparameters.

Issue - State: closed - Opened by wenruifan 12 months ago - 3 comments
Labels: refactor

#410 - Quantile Binning Refactor

Issue - State: open - Opened by haipinglu 12 months ago - 11 comments
Labels: refactor

#409 - Refactor resnet

Pull Request - State: closed - Opened by wenruifan 12 months ago - 1 comment
Labels: refactor

#408 - Short imagecnn

Pull Request - State: closed - Opened by wenruifan 12 months ago

#407 - Add prototypical network

Pull Request - State: closed - Opened by wenruifan about 1 year ago - 2 comments
Labels: new feature

#406 - Support to load parameters from a saved checkpoint

Issue - State: closed - Opened by xianyuanliu about 1 year ago - 1 comment
Labels: enhancement

#405 - Upgrade changlog-ci to v1.1.2

Pull Request - State: closed - Opened by xianyuanliu about 1 year ago - 1 comment
Labels: dependencies

#404 - Changelog workflow runs failed

Issue - State: closed - Opened by xianyuanliu about 1 year ago
Labels: action failed

#403 - Refine examples via unifying device settings and output folder names

Pull Request - State: closed - Opened by xianyuanliu about 1 year ago - 1 comment
Labels: refactor

#402 - [Refactor] Merge modules `losses`, `distance`, and `metrics` to one

Issue - State: closed - Opened by wenruifan about 1 year ago - 13 comments
Labels: refactor

#401 - Upgrade to support PyTorch 2.0+ and Lightning 2.0+

Pull Request - State: closed - Opened by shuo-zhou about 1 year ago - 4 comments
Labels: refactor

#398 - Refactor quantile binning

Pull Request - State: closed - Opened by alanbijuthomas about 1 year ago - 2 comments
Labels: refactor

#396 - [Feature Request] Consider input parameter validation in PyKale

Issue - State: closed - Opened by SinaTabakhi about 1 year ago
Labels: enhancement

#395 - Create main.py, cross_validation for multisite_neuroimg_adapt example

Pull Request - State: closed - Opened by alanbijuthomas about 1 year ago - 1 comment
Labels: new feature

#394 - [Refactor] Merge all evaluation metrics into one module

Issue - State: closed - Opened by SinaTabakhi about 1 year ago - 3 comments
Labels: refactor, stale-issue

#393 - [Refactor] Considering the incorporation of the OneHotEncoder from scikit-learn into PyKale

Issue - State: closed - Opened by SinaTabakhi about 1 year ago - 3 comments
Labels: refactor, stale-issue

#391 - PyPI workflow to use ubuntu-latest

Pull Request - State: closed - Opened by haipinglu about 1 year ago - 1 comment

#390 - Release 0.1.2

Pull Request - State: closed - Opened by haipinglu about 1 year ago - 2 comments

#389 - Release 0.1.2

Pull Request - State: closed - Opened by haipinglu about 1 year ago - 1 comment

#388 - Release 0.1.2

Pull Request - State: closed - Opened by haipinglu about 1 year ago - 1 comment

#387 - Refactor QBin to be one level up from Pykale repo, under the pykale umbrella

Issue - State: closed - Opened by Schobs over 1 year ago - 2 comments
Labels: refactor, stale-issue

#386 - Refactor documentation and resolve module visibility issues in PyKale

Pull Request - State: closed - Opened by SinaTabakhi over 1 year ago - 1 comment
Labels: refactor

#385 - Refactor input parameter of the data loader in PolypharmacyDataset class

Pull Request - State: closed - Opened by SinaTabakhi over 1 year ago - 1 comment
Labels: refactor

#383 - Update keyword param for pretrained ResNet

Pull Request - State: closed - Opened by shuo-zhou over 1 year ago - 2 comments
Labels: refactor

#382 - Fix "OSError" error in testflow

Pull Request - State: closed - Opened by Mdnaimulislam over 1 year ago - 2 comments
Labels: bug

#381 - Update urllib3 requirement from <2.0 to <3.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 2 comments
Labels: dependencies

#380 - Fix readthedoc error

Pull Request - State: closed - Opened by Mdnaimulislam over 1 year ago - 1 comment
Labels: bug

#376 - [Bug] Error raised by version mismatch between PyTorch and Lightning while running tutorial

Issue - State: closed - Opened by xianyuanliu over 1 year ago - 2 comments
Labels: bug

#375 - PyTorch 2.0

Issue - State: closed - Opened by XianyuanLiu over 1 year ago - 1 comment

#374 - Update ipython requirement from <=8.12.0 to <=8.13.1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 3 comments
Labels: dependencies

#373 - Update ipython requirement from <=8.12.0 to <=8.13.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 3 comments
Labels: dependencies

#372 - Update IPython version from <9.0 to <8.13 to support Python 3.8

Pull Request - State: closed - Opened by XianyuanLiu over 1 year ago - 1 comment
Labels: bug

#371 - [Bug] The latest IPython does not support Python 3.8

Issue - State: closed - Opened by XianyuanLiu over 1 year ago
Labels: bug

#370 - Support py3.10 and remove py3.7

Pull Request - State: closed - Opened by Mdnaimulislam over 1 year ago - 5 comments
Labels: bug

#369 - Add python version 3.10 and remove python version 3.7

Pull Request - State: closed - Opened by Mdnaimulislam over 1 year ago

#368 - [Bug]got error while running tutorial

Issue - State: closed - Opened by zj71 over 1 year ago - 2 comments
Labels: bug

#366 - Test

Issue - State: closed - Opened by Mdnaimulislam over 1 year ago

#365 - Update project.yml for the new project board

Pull Request - State: closed - Opened by Mdnaimulislam over 1 year ago - 2 comments
Labels: new feature

#364 - test

Issue - State: closed - Opened by Mdnaimulislam over 1 year ago

#363 - test

Issue - State: closed - Opened by Mdnaimulislam over 1 year ago

#362 - Databooks installation fails

Issue - State: closed - Opened by XianyuanLiu over 1 year ago - 1 comment
Labels: bug

#361 - Add MOGONET for multiomics integration using PyG and Lightning

Pull Request - State: closed - Opened by SinaTabakhi over 1 year ago - 1 comment
Labels: new feature

#360 - Add multimodal neural network for multimodal data integration with AVMNIST example

Pull Request - State: closed - Opened by Mdnaimulislam over 1 year ago - 2 comments
Labels: new feature

#359 - Create FUNDING.yml

Pull Request - State: closed - Opened by haipinglu over 1 year ago

#358 - Add option to log messages to terminal

Pull Request - State: closed - Opened by Schobs over 1 year ago - 1 comment
Labels: new feature

#357 - Add pyg version constraint in CI envs

Pull Request - State: closed - Opened by NYXFLOWER over 1 year ago - 2 comments

#356 - Update CIFAR CNNTransformer example to Lightning

Pull Request - State: closed - Opened by HaolinWang2001 over 1 year ago - 6 comments
Labels: new feature

#355 - Fix tensorly version and update flake8 github link

Pull Request - State: closed - Opened by shuo-zhou over 1 year ago
Labels: tests

#354 - Fix conda rdkit and boost-cpp conflict issue

Pull Request - State: closed - Opened by peizhenbai almost 2 years ago - 3 comments
Labels: bug, tests

#353 - Fix importlib-metadata

Pull Request - State: closed - Opened by haipinglu almost 2 years ago - 1 comment
Labels: dependencies

#348 - Create stale workflow

Pull Request - State: closed - Opened by Mdnaimulislam about 2 years ago - 6 comments
Labels: new feature

#347 - Fix rdkit error in testflow

Pull Request - State: closed - Opened by peizhenbai about 2 years ago - 2 comments
Labels: tests

#346 - Update the polypharmacy example and GripNet implementation

Pull Request - State: closed - Opened by NYXFLOWER about 2 years ago - 4 comments
Labels: enhancement

#345 - Add file path as a dicom dataset attribute

Pull Request - State: closed - Opened by shuo-zhou about 2 years ago - 1 comment
Labels: enhancement

#344 - Release 0.1.1

Pull Request - State: closed - Opened by haipinglu about 2 years ago - 2 comments

#343 - Add missing comma to bibtex and clarify python version supported

Pull Request - State: closed - Opened by haipinglu about 2 years ago - 1 comment
Labels: documentation

#342 - Add arguments to visualize, rename examples, and update docs

Pull Request - State: closed - Opened by shuo-zhou about 2 years ago - 1 comment
Labels: enhancement

#341 - Update Colab installation, add notebook hook, correct deepdta, and improve docs

Pull Request - State: closed - Opened by shuo-zhou about 2 years ago - 2 comments
Labels: refactor

#340 - Update reading DICOM and marker visualization

Pull Request - State: closed - Opened by shuo-zhou about 2 years ago - 1 comment
Labels: new feature

#339 - Add setup options and improve docs

Pull Request - State: closed - Opened by haipinglu about 2 years ago - 1 comment
Labels: dependencies

#338 - Improve GripNet implementation

Pull Request - State: closed - Opened by NYXFLOWER about 2 years ago - 2 comments
Labels: new feature