pyiron/pyiron_contrib issues and pull requests

#780 - Bump scipy from 1.10.1 to 1.11.1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 6 comments
Labels: dependencies

#779 - Bump pympipool from 0.5.4 to 0.5.5

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#778 - Return output when calling `run`

Pull Request - State: closed - Opened by liamhuber over 1 year ago - 2 comments
Labels: .workflow

#777 - Clean executor fails

Pull Request - State: closed - Opened by liamhuber over 1 year ago - 3 comments
Labels: .workflow

#776 - Hotfix: represeting NotData

Pull Request - State: closed - Opened by liamhuber over 1 year ago - 2 comments
Labels: .workflow

#775 - Bump pyiron-base from 0.6.1 to 0.6.2

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 4 comments
Labels: dependencies

#774 - Bump boto3 from 1.28.1 to 1.28.3

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 7 comments
Labels: dependencies

#773 - Bump moto from 4.1.12 to 4.1.13

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 5 comments
Labels: dependencies

#772 - Bump pympipool from 0.5.1 to 0.5.4

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 3 comments
Labels: dependencies

#771 - :bug: Node package updates incomplete

Issue - State: closed - Opened by liamhuber over 1 year ago - 1 comment
Labels: .workflow

#770 - Parse output labels automatically

Pull Request - State: closed - Opened by liamhuber over 1 year ago - 5 comments
Labels: format_black, .workflow

#769 - Node input as args

Pull Request - State: closed - Opened by liamhuber over 1 year ago - 9 comments
Labels: .workflow

#768 - Make the dot dict contents show up in tab completion

Pull Request - State: closed - Opened by liamhuber over 1 year ago - 2 comments
Labels: .workflow

#767 - More cloudpickle executor

Pull Request - State: closed - Opened by liamhuber over 1 year ago - 4 comments
Labels: format_black

#766 - TinyBase: Status and Roadmap

Issue - State: open - Opened by pmrv over 1 year ago - 5 comments
Labels: .tinybase

#765 - Executor submodule

Pull Request - State: closed - Opened by liamhuber over 1 year ago - 7 comments

#764 - Node granularity - When do we consider a node to be macro?

Issue - State: closed - Opened by mbruns91 over 1 year ago - 9 comments
Labels: .workflow

#763 - Bump boto3 from 1.26.165 to 1.28.1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 2 comments
Labels: dependencies

#762 - Bump matplotlib from 3.7.1 to 3.7.2

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 8 comments
Labels: dependencies

#761 - Order things for circular graphs

Pull Request - State: closed - Opened by liamhuber over 1 year ago - 5 comments
Labels: .workflow

#760 - Introduce running on an executor

Pull Request - State: closed - Opened by liamhuber over 1 year ago - 2 comments
Labels: .workflow

#759 - Bump distributed from 2023.5.0 to 2023.6.1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 7 comments
Labels: dependencies

#758 - Bump boto3 from 1.26.160 to 1.26.165

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 3 comments
Labels: dependencies

#757 - extend node decorator to write/read node functions to/from repository

Issue - State: open - Opened by JNmpi over 1 year ago - 6 comments
Labels: .workflow

#756 - Suggestions and issues for the workflow class

Issue - State: closed - Opened by JNmpi over 1 year ago - 21 comments
Labels: .workflow

#755 - Fast by default

Pull Request - State: closed - Opened by liamhuber over 1 year ago - 3 comments
Labels: .workflow

#754 - Data channel value starts as not data

Pull Request - State: closed - Opened by liamhuber over 1 year ago - 2 comments
Labels: .workflow

#753 - Update docs

Pull Request - State: closed - Opened by liamhuber over 1 year ago - 1 comment
Labels: .workflow

#752 - Add a `NotData` class to initialize data channel values

Issue - State: closed - Opened by liamhuber over 1 year ago
Labels: enhancement, .workflow

#751 - Rename classes

Pull Request - State: closed - Opened by liamhuber over 1 year ago - 5 comments
Labels: .workflow

#750 - Fix type hints

Pull Request - State: closed - Opened by liamhuber over 1 year ago - 2 comments
Labels: .workflow

#749 - Composition to inheritance

Pull Request - State: closed - Opened by liamhuber over 1 year ago - 3 comments

#748 - Workflow: Composition to inheritance

Pull Request - State: closed - Opened by liamhuber over 1 year ago - 4 comments
Labels: .workflow

#747 - meta discussion: sub-module tags?

Issue - State: closed - Opened by liamhuber over 1 year ago - 1 comment

#746 - Workflow: `ready`, `connected`, `fully_connected` and more?

Issue - State: closed - Opened by samwaseda over 1 year ago - 2 comments
Labels: .workflow

#745 - Workflow: Centralize working directory

Pull Request - State: closed - Opened by liamhuber over 1 year ago - 4 comments

#744 - Workflow: Why can't `Node` have a `working_directory`

Issue - State: closed - Opened by liamhuber over 1 year ago - 6 comments
Labels: question, .workflow

#743 - Workflow: Draft spec

Pull Request - State: closed - Opened by liamhuber over 1 year ago - 4 comments
Labels: .workflow

#742 - Test self capability

Pull Request - State: closed - Opened by liamhuber over 1 year ago - 3 comments

#741 - Bump boto3 from 1.26.155 to 1.26.160

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 2 comments
Labels: dependencies

#740 - Bump moto from 4.1.11 to 4.1.12

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 2 comments
Labels: dependencies

#739 - Bump scipy from 1.10.1 to 1.11.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 4 comments
Labels: dependencies

#738 - Tinybase: Rework storage interface

Pull Request - State: closed - Opened by pmrv over 1 year ago - 4 comments
Labels: enhancement, format_black

#737 - Workflow: Build IO in the property if it doesn't exist already

Pull Request - State: closed - Opened by liamhuber over 1 year ago - 2 comments

#736 - Workflow: Remove storage priority

Pull Request - State: closed - Opened by liamhuber over 1 year ago - 3 comments

#735 - Workflow: Better io

Pull Request - State: closed - Opened by liamhuber over 1 year ago - 2 comments
Labels: format_black

#734 - Tinybase: Add creators for UX

Pull Request - State: closed - Opened by pmrv over 1 year ago - 6 comments
Labels: enhancement, format_black

#733 - Workflow: Merge changes I made so far

Pull Request - State: closed - Opened by samwaseda over 1 year ago - 14 comments

#732 - Workflow: Refactor io

Pull Request - State: closed - Opened by liamhuber over 1 year ago - 2 comments
Labels: format_black

#731 - Use the new workflow that swaps 3.8 for 3.11

Pull Request - State: closed - Opened by liamhuber over 1 year ago - 3 comments

#730 - Add pympipool executor

Pull Request - State: closed - Opened by pmrv over 1 year ago - 3 comments
Labels: enhancement, format_black

#729 - New class hierarchy and better readiness checking

Pull Request - State: closed - Opened by liamhuber over 1 year ago - 11 comments
Labels: format_black, .workflow

#726 - Workflow: Workflows and Nodes need a common ancestor

Issue - State: closed - Opened by liamhuber over 1 year ago - 9 comments
Labels: .workflow

#725 - Introduce DirectoryObject and FileObject in Workflow

Pull Request - State: closed - Opened by samwaseda over 1 year ago - 10 comments
Labels: enhancement, format_black

#721 - Bump numpy from 1.24.3 to 1.25.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 12 comments
Labels: dependencies

#720 - Bump boto3 from 1.26.151 to 1.26.155

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 2 comments
Labels: dependencies

#719 - Bump pyparsing from 3.0.9 to 3.1.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 2 comments
Labels: dependencies

#717 - Workflow: Automatic parsing of outputs

Issue - State: closed - Opened by samwaseda over 1 year ago - 7 comments
Labels: enhancement, .workflow

#716 - Workflow: Introduce meta nodes

Pull Request - State: closed - Opened by liamhuber over 1 year ago - 7 comments
Labels: format_black, .workflow

#706 - Bump scikit-image from 0.19.3 to 0.21.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 6 comments
Labels: dependencies

#702 - Concepts and ideas for a node-based pyiron applied to file-based executables

Issue - State: closed - Opened by JNmpi over 1 year ago - 1 comment
Labels: enhancement

#700 - Fitsnap update

Pull Request - State: closed - Opened by mgt16-LANL over 1 year ago - 6 comments

#699 - More eam inits

Pull Request - State: open - Opened by samwaseda over 1 year ago - 2 comments

#698 - Make LAMMPS potential algebraic

Pull Request - State: closed - Opened by samwaseda over 1 year ago - 2 comments
Labels: enhancement, format_black

#692 - Some syntax ideas for the workflow class

Issue - State: open - Opened by JNmpi over 1 year ago - 2 comments
Labels: enhancement, .workflow

#691 - Fix child job access bug in QuasiHarmonicApproximation

Pull Request - State: closed - Opened by raynol-dsouza over 1 year ago - 2 comments

#690 - add `QuasiHarmonicApproximation` in init.py

Pull Request - State: closed - Opened by samwaseda over 1 year ago - 2 comments

#689 - Create init.py

Pull Request - State: closed - Opened by samwaseda over 1 year ago - 2 comments

#688 - Should every node run to get the output in workflow?

Issue - State: closed - Opened by samwaseda over 1 year ago - 20 comments

#687 - Bump moto from 4.1.9 to 4.1.10

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#686 - Bump boto3 from 1.26.133 to 1.26.137

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#685 - Bump pyiron-atomistics from 0.2.66 to 0.2.67

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#684 - Bump pyiron-base from 0.5.37 to 0.5.38

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#683 - Update job class dict

Pull Request - State: closed - Opened by jan-janssen over 1 year ago - 1 comment

#682 - Refactor the two ways of adding into a single method

Pull Request - State: closed - Opened by liamhuber over 1 year ago - 1 comment

#681 - Add initial implementation for FitsnapJob

Pull Request - State: closed - Opened by jan-janssen over 1 year ago - 1 comment
Labels: format_black

#680 - Bump boto3 from 1.26.129 to 1.26.133

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 2 comments
Labels: dependencies

#679 - Bump moto from 4.1.8 to 4.1.9

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#678 - Bump typeguard from 3.0.2 to 4.0.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#677 - Tinybase: Basic.ipynb throwing an error

Issue - State: closed - Opened by liamhuber over 1 year ago - 9 comments

#676 - MTP AL: Read atom species consistently with potential

Pull Request - State: closed - Opened by pmrv over 1 year ago - 1 comment

#675 - Add a doc example for workflow inputs and outputs

Pull Request - State: open - Opened by liamhuber over 1 year ago - 3 comments

#674 - How can I get the output in workflow?

Issue - State: open - Opened by samwaseda over 1 year ago - 3 comments
Labels: documentation

#673 - `atomistics.BulkStructure` to `atomistics.bulk_structure`?

Issue - State: closed - Opened by samwaseda over 1 year ago - 1 comment

#672 - Make randspg a real dependency

Issue - State: closed - Opened by liamhuber over 1 year ago - 3 comments

#671 - Add a check if randspg binary is installed

Pull Request - State: closed - Opened by pmrv over 1 year ago - 17 comments

#670 - the randspg job has no warning that it fails for windows

Issue - State: closed - Opened by liamhuber over 1 year ago - 6 comments

#669 - Use pyiron actions

Pull Request - State: closed - Opened by liamhuber over 1 year ago - 11 comments
Labels: format_black

#668 - Move tests to unit folder

Pull Request - State: closed - Opened by liamhuber over 1 year ago - 1 comment

#667 - Fail earlier without output labels

Pull Request - State: closed - Opened by liamhuber over 1 year ago - 1 comment

#666 - Node status

Pull Request - State: closed - Opened by liamhuber over 1 year ago - 1 comment

#665 - Bump scikit-image from 0.19.3 to 0.20.0

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#664 - Bump boto3 from 1.26.118 to 1.26.129

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#663 - Use consistent language for IO

Pull Request - State: closed - Opened by liamhuber over 1 year ago - 1 comment

#662 - Let channels wait

Pull Request - State: closed - Opened by liamhuber over 1 year ago - 2 comments

#661 - Make special workflow nodes more flexible at instantiation

Pull Request - State: closed - Opened by liamhuber over 1 year ago - 1 comment

#660 - QoL: Protect node init keywords

Pull Request - State: closed - Opened by liamhuber over 1 year ago - 1 comment

#659 - Some workflow classes not getting `_repr_json_` triggered

Issue - State: closed - Opened by liamhuber over 1 year ago - 3 comments
Labels: bug

#658 - Qol workflow reprs

Pull Request - State: closed - Opened by liamhuber over 1 year ago - 2 comments

#657 - Attach node packages to workflow

Pull Request - State: closed - Opened by liamhuber over 1 year ago - 2 comments

GitHub / pyiron/pyiron_contrib issues and pull requests