pyiron/pyiron_base issues and pull requests

#1135 - Instructions to install flux via conda are wrong

Issue - State: closed - Opened by liamhuber over 1 year ago - 4 comments

#1134 - Merge main

Pull Request - State: closed - Opened by niklassiemer over 1 year ago

#1133 - Add numpy equality check for unit tests

Pull Request - State: closed - Opened by pmrv over 1 year ago
Labels: enhancement, format_black

#1132 - Fix maintenance and add tests

Pull Request - State: closed - Opened by niklassiemer over 1 year ago

#1131 - Check pyiron installation

Pull Request - State: closed - Opened by jan-janssen over 1 year ago - 3 comments
Labels: help wanted, format_black

#1130 - project maintenance is outdated and not tested

Issue - State: open - Opened by Leimeroth over 1 year ago

#1129 - Bump sqlalchemy from 2.0.15 to 2.0.16

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1128 - Add tests for server object

Pull Request - State: closed - Opened by jan-janssen over 1 year ago

#1127 - GPU bug fix

Pull Request - State: closed - Opened by jan-janssen over 1 year ago

#1126 - Add GPU support

Pull Request - State: closed - Opened by jan-janssen over 1 year ago - 1 comment

#1125 - Drop future support

Pull Request - State: closed - Opened by jan-janssen over 1 year ago - 1 comment

#1124 - Update pysqa to 0.0.25

Pull Request - State: closed - Opened by jan-janssen over 1 year ago

#1123 - Queue status

Pull Request - State: closed - Opened by jan-janssen over 1 year ago
Labels: format_black

#1122 - Pypi package broken

Issue - State: closed - Opened by jan-janssen over 1 year ago - 3 comments

#1121 - Move all run functions to separate module

Pull Request - State: closed - Opened by jan-janssen over 1 year ago
Labels: format_black

#1120 - Implement run_mode flux based on the flux python interface

Pull Request - State: closed - Opened by jan-janssen over 1 year ago - 5 comments
Labels: format_black

#1119 - Runmode manually: Fix message when run without database

Pull Request - State: closed - Opened by jan-janssen over 1 year ago
Labels: format_black

#1118 - Update deploy workflow

Pull Request - State: closed - Opened by niklassiemer over 1 year ago

#1117 - Secure UpdateDependabotPR.yml

Pull Request - State: closed - Opened by niklassiemer over 1 year ago - 1 comment

#1116 - Bump pandas from 2.0.1 to 2.0.2

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1115 - HasStoredTraits: Use setitem instead of setattr

Pull Request - State: closed - Opened by pmrv over 1 year ago
Labels: bug

#1114 - Documentation Enhancement: Correct YAML Indentation in queue.yaml Example

Issue - State: closed - Opened by rwexler over 1 year ago - 5 comments

#1113 - Do not try to double write objects that define to_hdf

Pull Request - State: closed - Opened by pmrv over 1 year ago
Labels: bug

#1112 - Only try to lock Traits objects

Pull Request - State: closed - Opened by pmrv over 1 year ago - 3 comments
Labels: enhancement, format_black

#1111 - fix for missing pyironconfig in contrib

Pull Request - State: closed - Opened by niklassiemer over 1 year ago
Labels: integration

#1110 - Add command line option to collect jobs

Pull Request - State: closed - Opened by jan-janssen over 1 year ago
Labels: format_black

#1109 - Fix command line crashing

Pull Request - State: closed - Opened by jan-janssen over 1 year ago - 4 comments

#1107 - Bump pint from 0.21 to 0.22

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 4 comments
Labels: dependencies

#1106 - Allow upper case characters in simulation code names

Pull Request - State: closed - Opened by jan-janssen over 1 year ago - 2 comments

#1105 - Remove working directory warnings

Pull Request - State: closed - Opened by jan-janssen over 1 year ago - 6 comments
Labels: format_black

#1104 - Allow for project_path to be relative

Pull Request - State: closed - Opened by liamhuber over 1 year ago - 2 comments

#1103 - :bug: `FileTable` does not play well with non-`None` project paths

Issue - State: closed - Opened by liamhuber over 1 year ago - 7 comments

#1102 - Bump sqlalchemy from 2.0.13 to 2.0.15

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1101 - Polish filetable

Pull Request - State: closed - Opened by liamhuber over 1 year ago
Labels: format_black

#1100 - Job_id at server is none for any job_name other than 'Al_T800K_remote'

Issue - State: closed - Opened by adyant2 over 1 year ago - 5 comments

#1099 - Refactor `load_file` to be more flexible

Pull Request - State: closed - Opened by niklassiemer over 1 year ago

#1098 - Bump sqlalchemy from 2.0.12 to 2.0.13

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1097 - Bump pyfileindex from 0.0.8 to 0.0.11

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1096 - OSError: Read-only file system :`~/pyiron.log`; Queued job fails!

Issue - State: closed - Opened by hari-ushankar almost 2 years ago - 5 comments

#1095 - Updates to FileTable

Pull Request - State: closed - Opened by jan-janssen almost 2 years ago - 4 comments
Labels: format_black

#1094 - Merge main

Pull Request - State: closed - Opened by jan-janssen almost 2 years ago

#1093 - Provide PyFileIndex as additional input

Pull Request - State: closed - Opened by jan-janssen almost 2 years ago - 1 comment
Labels: format_black

#1092 - Update pyfileindex to 0.0.8

Pull Request - State: closed - Opened by jan-janssen almost 2 years ago

#1091 - Pysqa update to 0.0.24

Pull Request - State: closed - Opened by jan-janssen almost 2 years ago

#1090 - make executable.storage contain exec text itself?

Issue - State: open - Opened by appassionate almost 2 years ago - 4 comments

#1089 - Recognize pyiron HDF5 files as pyiron files

Issue - State: open - Opened by jan-janssen almost 2 years ago

#1088 - Bump pint from 0.20.1 to 0.21

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#1087 - Update pysqa to 0.0.23

Pull Request - State: closed - Opened by jan-janssen almost 2 years ago

#1086 - remove delete remote

Pull Request - State: closed - Opened by Leimeroth almost 2 years ago

#1085 - Queue adapter interface is not documented or tested

Issue - State: open - Opened by liamhuber almost 2 years ago - 2 comments
Labels: documentation, help wanted, Discussion

#1084 - Update pysqa to 0.0.22

Pull Request - State: closed - Opened by jan-janssen almost 2 years ago

#1083 - Queue submission interactive additions

Issue - State: closed - Opened by mgt16-LANL almost 2 years ago - 6 comments
Labels: enhancement

#1082 - Add support for additional arguments in the queue scripts

Pull Request - State: closed - Opened by jan-janssen almost 2 years ago - 12 comments
Labels: format_black

#1081 - update pysqa to 0.0.21

Pull Request - State: closed - Opened by jan-janssen almost 2 years ago

#1080 - add function container

Pull Request - State: closed - Opened by jan-janssen almost 2 years ago - 1 comment
Labels: stale, format_black

#1079 - Bump pandas from 2.0.0 to 2.0.1

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#1078 - Bump sqlalchemy from 2.0.10 to 2.0.12

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 3 comments
Labels: dependencies

#1077 - Update coverage token

Pull Request - State: closed - Opened by pyiron-runner almost 2 years ago

#1076 - Efficient and stable file table

Pull Request - State: closed - Opened by liamhuber almost 2 years ago - 2 comments
Labels: format_black

#1075 - File table not singleton

Pull Request - State: closed - Opened by liamhuber almost 2 years ago - 1 comment

#1074 - Reindex file table

Pull Request - State: closed - Opened by liamhuber almost 2 years ago - 1 comment
Labels: format_black

#1073 - FileTable not updating its path

Issue - State: closed - Opened by liamhuber almost 2 years ago - 11 comments
Labels: bug

#1072 - Init new db fails - no config file.

Issue - State: closed - Opened by usaikia almost 2 years ago - 6 comments

#1071 - Bump pysqa from 0.0.19 to 0.0.20

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#1070 - Bump psutil from 5.9.4 to 5.9.5

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#1069 - Bump numpy from 1.24.2 to 1.24.3

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#1068 - Bump sqlalchemy from 2.0.9 to 2.0.10

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#1067 - Fix run_time_to_db() for jobs submitted to remote computers

Pull Request - State: closed - Opened by jan-janssen almost 2 years ago - 4 comments

#1066 - What does `new_database_entry = False` do?

Issue - State: closed - Opened by samwaseda almost 2 years ago - 2 comments
Labels: bug

#1065 - Bump sqlalchemy from 2.0.8 to 2.0.9

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#1064 - Allow unknown credentials

Pull Request - State: closed - Opened by niklassiemer almost 2 years ago
Labels: integration

#1063 - Update pandas to 2.0.0

Pull Request - State: closed - Opened by jan-janssen almost 2 years ago - 1 comment

#1062 - Bump sqlalchemy from 1.4.46 to 2.0.8

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#1061 - Compatibility of `lazy` and `remove`

Issue - State: open - Opened by samwaseda almost 2 years ago - 1 comment

#1060 - Making new job classes

Pull Request - State: closed - Opened by liamhuber almost 2 years ago - 2 comments
Labels: stale

#1059 - Allow md source files

Pull Request - State: closed - Opened by liamhuber almost 2 years ago - 1 comment
Labels: stale

#1058 - Bump sqlalchemy from 1.4.46 to 2.0.7

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 1 comment
Labels: dependencies, integration

#1057 - Use pprint to represent DataContainers, not forcing HDFStubs

Pull Request - State: closed - Opened by niklassiemer almost 2 years ago - 7 comments
Labels: stale

#1056 - Job ID on Remote HPC not matching local ID

Issue - State: open - Opened by pstaerk almost 2 years ago - 9 comments

#1055 - Add WCI file

Pull Request - State: closed - Opened by jan-janssen almost 2 years ago - 1 comment

#1054 - HasHDF: Use generic list_groups instead of list_dirs

Pull Request - State: closed - Opened by pmrv almost 2 years ago
Labels: integration

#1053 - Bump sqlalchemy from 1.4.46 to 2.0.5.post1

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 1 comment

#1052 - Bump tqdm from 4.64.1 to 4.65.0

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#1051 - New Generic Job interface to unify input & output AND make jobs hashable

Issue - State: open - Opened by samwaseda almost 2 years ago - 10 comments
Labels: enhancement, Feature request

#1050 - Parallel pyiron table

Pull Request - State: closed - Opened by jan-janssen almost 2 years ago - 10 comments
Labels: format_black

#1049 - Bump sqlalchemy from 1.4.46 to 2.0.4

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 1 comment
Labels: dependencies

#1048 - Hackathon docs changes

Pull Request - State: closed - Opened by liamhuber almost 2 years ago - 7 comments
Labels: stale

#1047 - project pack raise warning when destination_path matches project path

Pull Request - State: closed - Opened by jan-janssen almost 2 years ago - 4 comments
Labels: format_black

#1046 - Danger with project pack

Issue - State: closed - Opened by jan-janssen almost 2 years ago - 2 comments

#1044 - Implement @to_hdf_decorator decorator

Pull Request - State: closed - Opened by jan-janssen almost 2 years ago - 9 comments
Labels: format_black

#1043 - Downgrade sqlalchemy

Pull Request - State: closed - Opened by jan-janssen almost 2 years ago

#1042 - Use safe getitem() to enable reloading jobs with special characters like spaces

Pull Request - State: closed - Opened by jan-janssen almost 2 years ago
Labels: integration

#1041 - Raise warning when the job_name is changed

Pull Request - State: closed - Opened by jan-janssen almost 2 years ago - 2 comments
Labels: stale

#1040 - Inconsistent Behavior if Space in Job Name

Issue - State: open - Opened by pstaerk almost 2 years ago - 28 comments

#1039 - Bump sqlalchemy from 2.0.3 to 2.0.4

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#1038 - Bump gitpython from 3.1.30 to 3.1.31

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#1037 - Merge master

Pull Request - State: closed - Opened by jan-janssen almost 2 years ago

#1036 - Clean `generic.py` and `core.py` - part 2

Pull Request - State: closed - Opened by jan-janssen almost 2 years ago
Labels: integration

#1035 - Clean `generic.py` and `core.py` - part 1

Pull Request - State: closed - Opened by jan-janssen almost 2 years ago - 1 comment
Labels: integration

#1034 - Clean `generic.py` and `core.py`

Pull Request - State: closed - Opened by samwaseda almost 2 years ago - 5 comments
Labels: format_black

GitHub / pyiron/pyiron_base issues and pull requests