pyiron/pyiron_base issues and pull requests

#1236 - Switch to pyproject.toml

Pull Request - State: closed - Opened by jan-janssen about 1 year ago - 1 comment
Labels: integration

#1235 - Use proper monotonic clock for benchmark

Pull Request - State: closed - Opened by pmrv about 1 year ago - 2 comments

#1234 - Add a function to remap module paths for stored objects

Pull Request - State: closed - Opened by pmrv about 1 year ago - 3 comments
Labels: bug, integration, format_black

#1233 - Spurius benchmark fail in unit tests

Issue - State: open - Opened by pmrv about 1 year ago - 7 comments

#1232 - Update pyfileindex to 0.0.18 and pysqa to 0.1.7

Pull Request - State: closed - Opened by jan-janssen about 1 year ago

#1231 - Bump pyfileindex from 0.0.13 to 0.0.16

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 2 comments
Labels: dependencies

#1230 - `queue_table` and `queue_table_global` not working?

Issue - State: open - Opened by samwaseda about 1 year ago

#1229 - Use sphinx-rtd-theme

Pull Request - State: closed - Opened by jan-janssen about 1 year ago

#1228 - Use inspect and load

Pull Request - State: closed - Opened by liamhuber about 1 year ago

#1227 - Update pysqa to 0.1.4

Pull Request - State: closed - Opened by jan-janssen about 1 year ago

#1226 - Update pyfileindex to 0.0.13

Pull Request - State: closed - Opened by jan-janssen about 1 year ago

#1225 - Use trusted publisher action

Pull Request - State: closed - Opened by jan-janssen about 1 year ago

#1224 - Bump numpy from 1.26.0 to 1.26.2

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#1223 - Bump pandas from 2.1.2 to 2.1.3

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1222 - Fix iterjobs() without database

Pull Request - State: closed - Opened by jan-janssen over 1 year ago - 2 comments

#1221 - `iter_jobs()` fails without database

Issue - State: closed - Opened by jan-janssen over 1 year ago

#1220 - Bump sqlalchemy from 2.0.22 to 2.0.23

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1219 - Bump traitlets from 5.12.0 to 5.13.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1218 - Bump pandas from 2.1.1 to 2.1.2

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1217 - Bump traitlets from 5.11.2 to 5.12.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1216 - Bump gitpython from 3.1.37 to 3.1.40

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1215 - WIP: Implement #844 (bulk delete jobs)

Pull Request - State: open - Opened by pmrv over 1 year ago - 3 comments
Labels: enhancement, stale, performance

#1214 - Bump psutil from 5.9.5 to 5.9.6

Pull Request - State: closed - Opened by jan-janssen over 1 year ago - 2 comments

#1213 - Revert "Bump psutil from 5.9.5 to 5.9.6"

Pull Request - State: closed - Opened by jan-janssen over 1 year ago

#1212 - Bump h5py from 3.9.0 to 3.10.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 2 comments
Labels: dependencies

#1211 - Bump sqlalchemy from 2.0.21 to 2.0.22

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#1210 - Bump numpy from 1.26.0 to 1.26.1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 2 comments
Labels: dependencies

#1209 - Bump psutil from 5.9.5 to 5.9.6

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 5 comments
Labels: dependencies

#1208 - Pulling out super small modules?

Issue - State: closed - Opened by liamhuber over 1 year ago - 4 comments

#1207 - FlattenedStorage: Allow export to pandas dataframes

Pull Request - State: closed - Opened by pmrv over 1 year ago
Labels: enhancement, format_black

#1206 - Bump pyfileindex from 0.0.11 to 0.0.12

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1205 - Bump tables from 3.8.0 to 3.9.1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1204 - Bump traitlets from 5.10.1 to 5.11.2

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1203 - Move git import inside the function

Pull Request - State: closed - Opened by jan-janssen over 1 year ago

#1202 - merge master

Pull Request - State: closed - Opened by jan-janssen over 1 year ago

#1201 - Debug dependencies

Pull Request - State: closed - Opened by jan-janssen over 1 year ago

#1200 - Debug crashing jobs on executor with Python 3.11

Pull Request - State: closed - Opened by jan-janssen over 1 year ago - 2 comments

#1199 - pysqa update to 0.1.3

Pull Request - State: closed - Opened by jan-janssen over 1 year ago

#1198 - versioneer update to 0.29

Pull Request - State: closed - Opened by jan-janssen over 1 year ago - 2 comments

#1197 - Bump traitlets from 5.10.0 to 5.10.1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1196 - Bump gitpython from 3.1.36 to 3.1.37

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1195 - Bump sqlalchemy from 2.0.20 to 2.0.21

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1194 - Bump pandas from 2.1.0 to 2.1.1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1193 - suggestions from pmd general assembly

Issue - State: open - Opened by ligerzero-ai over 1 year ago - 5 comments
Labels: enhancement

#1192 - Bump numpy from 1.24.3 to 1.26.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 2 comments
Labels: dependencies

#1191 - Bump traitlets from 5.9.0 to 5.10.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#1190 - Bump gitpython from 3.1.35 to 3.1.36

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#1189 - Bump pysqa from 0.1.1 to 0.1.2

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1188 - If JOB_CLASS_DICT contains class return early

Pull Request - State: closed - Opened by pmrv over 1 year ago
Labels: bug, integration

#1187 - Revert "Bump numpy from 1.24.3 to 1.25.2"

Pull Request - State: closed - Opened by jan-janssen over 1 year ago

#1186 - Bump gitpython from 3.1.34 to 3.1.35

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1185 - Bump pandas from 2.0.3 to 2.1.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1184 - Bump gitpython from 3.1.32 to 3.1.34

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1183 - Bump h5io from 0.1.8 to 0.1.9

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1182 - Introduce a dirty remove() function for projects

Pull Request - State: closed - Opened by jan-janssen over 1 year ago - 1 comment

#1181 - Update pysqa to 0.1.1

Pull Request - State: closed - Opened by jan-janssen over 1 year ago

#1180 - Revert "Turn np.array_equal into proper asserts"

Pull Request - State: closed - Opened by niklassiemer over 1 year ago - 3 comments

#1179 - Update to recent main

Pull Request - State: closed - Opened by niklassiemer over 1 year ago

#1178 - Add a dummy ProjectHDFio class for generic to_dict()

Pull Request - State: closed - Opened by pmrv over 1 year ago - 3 comments
Labels: enhancement, integration, format_black

#1177 - Bump sqlalchemy from 2.0.19 to 2.0.20

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1176 - Bump tqdm from 4.65.0 to 4.66.1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1175 - Bump numpy from 1.24.3 to 1.25.2

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1173 - Use _get_safe_job_name in JobGenerator

Pull Request - State: closed - Opened by pmrv over 1 year ago - 1 comment
Labels: bug, integration

#1172 - Bump dill from 0.3.6 to 0.3.7

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1171 - Flux Template rendering fix

Pull Request - State: closed - Opened by jan-janssen over 1 year ago

#1170 - Update pysqa to 0.1.0

Pull Request - State: closed - Opened by jan-janssen over 1 year ago

#1169 - Merge main

Pull Request - State: closed - Opened by jan-janssen over 1 year ago

#1168 - Fake out old tale.datamining for backwards compat

Pull Request - State: closed - Opened by pmrv over 1 year ago - 2 comments
Labels: bug, stale, integration, format_black

#1167 - Bump sqlalchemy from 2.0.18 to 2.0.19

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1166 - Bump gitpython from 3.1.31 to 3.1.32

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1165 - Bug fixes for flux

Pull Request - State: closed - Opened by jan-janssen over 1 year ago

#1164 - Switch from dill to cloudpickle

Pull Request - State: closed - Opened by jan-janssen over 1 year ago - 10 comments
Labels: help wanted, format_black

#1163 - Pyiron tables: Backwards compatibility broken again by #796

Issue - State: closed - Opened by pmrv over 1 year ago - 1 comment
Labels: bug

#1162 - Add an interface to turn objects read-only

Pull Request - State: closed - Opened by pmrv over 1 year ago - 6 comments
Labels: enhancement, integration, format_black

#1161 - Bump sqlalchemy from 2.0.17 to 2.0.18

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1160 - Bump h5io from 0.1.7 to 0.1.8

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1159 - Bump numpy from 1.24.3 to 1.25.1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#1158 - Backwards compatibility test broken by development release on `pyiron_atomistics`

Issue - State: closed - Opened by jan-janssen over 1 year ago - 4 comments

#1157 - Forbid changing the job.server.run_mode after job.run

Issue - State: open - Opened by pmrv over 1 year ago - 2 comments

#1156 - Fixes for parallel master without database

Pull Request - State: closed - Opened by jan-janssen over 1 year ago - 2 comments
Labels: format_black

#1155 - Implement concurrent.futures.ProcessPoolExecutor interface

Pull Request - State: closed - Opened by jan-janssen over 1 year ago - 32 comments
Labels: format_black

#1154 - Reimplement the flux interface

Pull Request - State: closed - Opened by jan-janssen over 1 year ago - 38 comments
Labels: format_black

#1153 - Update run_mode documentation

Pull Request - State: closed - Opened by jan-janssen over 1 year ago

#1152 - Introduce job.server.executor property

Pull Request - State: closed - Opened by jan-janssen over 1 year ago
Labels: format_black

#1151 - Add explicit return to run() functions

Pull Request - State: closed - Opened by jan-janssen over 1 year ago

#1150 - Bump pandas from 2.0.2 to 2.0.3

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1149 - Add method to delete arrays from FlattenedStorage

Pull Request - State: closed - Opened by pmrv over 1 year ago
Labels: enhancement

#1148 - Drop pathlib2

Pull Request - State: closed - Opened by pmrv over 1 year ago - 1 comment
Labels: dependencies, integration

#1147 - Turn np.array_equal into proper asserts

Pull Request - State: closed - Opened by pmrv over 1 year ago - 2 comments

#1146 - Bump sqlalchemy from 2.0.16 to 2.0.17

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 2 comments
Labels: dependencies

#1145 - Bump h5py from 3.8.0 to 3.9.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#1144 - Updating numpy creates a different number of warnings...which fails CI

Issue - State: open - Opened by liamhuber over 1 year ago - 3 comments

#1143 - Numpy update fails tests...what was intended?

Issue - State: closed - Opened by liamhuber over 1 year ago - 7 comments

#1142 - Re-introduce flux

Pull Request - State: closed - Opened by liamhuber over 1 year ago - 1 comment

#1141 - Revert flux introduction

Pull Request - State: closed - Opened by liamhuber over 1 year ago
Labels: integration

#1140 - Bump numpy from 1.24.3 to 1.25.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 2 comments
Labels: dependencies

#1139 - FileTable on windows

Pull Request - State: closed - Opened by liamhuber over 1 year ago
Labels: integration

#1138 - Check if project path exists before creating Project

Pull Request - State: closed - Opened by niklassiemer over 1 year ago
Labels: format_black

#1137 - table job of packed Project fails to load data

Issue - State: closed - Opened by niklassiemer over 1 year ago - 1 comment

#1136 - Fix error message

Pull Request - State: closed - Opened by liamhuber over 1 year ago

GitHub / pyiron/pyiron_base issues and pull requests