Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / pyiron/pyiron_base issues and pull requests

#1084 - Update pysqa to 0.0.22

Pull Request - State: closed - Opened by jan-janssen about 1 year ago

#1083 - Queue submission interactive additions

Issue - State: closed - Opened by mgt16-LANL over 1 year ago - 6 comments
Labels: enhancement

#1082 - Add support for additional arguments in the queue scripts

Pull Request - State: closed - Opened by jan-janssen about 1 year ago - 12 comments
Labels: format_black

#1081 - update pysqa to 0.0.21

Pull Request - State: closed - Opened by jan-janssen about 1 year ago

#1080 - add function container

Pull Request - State: closed - Opened by jan-janssen about 1 year ago - 1 comment
Labels: stale, format_black

#1079 - Bump pandas from 2.0.0 to 2.0.1

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#1078 - Bump sqlalchemy from 2.0.10 to 2.0.12

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 3 comments
Labels: dependencies

#1077 - Update coverage token

Pull Request - State: closed - Opened by pyiron-runner about 1 year ago

#1076 - Efficient and stable file table

Pull Request - State: closed - Opened by liamhuber about 1 year ago - 2 comments
Labels: format_black

#1075 - File table not singleton

Pull Request - State: closed - Opened by liamhuber about 1 year ago - 1 comment

#1074 - Reindex file table

Pull Request - State: closed - Opened by liamhuber about 1 year ago - 1 comment
Labels: format_black

#1073 - FileTable not updating its path

Issue - State: closed - Opened by liamhuber about 1 year ago - 11 comments
Labels: bug

#1072 - Init new db fails - no config file.

Issue - State: closed - Opened by usaikia about 1 year ago - 6 comments

#1071 - Bump pysqa from 0.0.19 to 0.0.20

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#1070 - Bump psutil from 5.9.4 to 5.9.5

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#1069 - Bump numpy from 1.24.2 to 1.24.3

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#1068 - Bump sqlalchemy from 2.0.9 to 2.0.10

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#1067 - Fix run_time_to_db() for jobs submitted to remote computers

Pull Request - State: closed - Opened by jan-janssen about 1 year ago - 4 comments

#1066 - What does `new_database_entry = False` do?

Issue - State: closed - Opened by samwaseda about 1 year ago - 2 comments
Labels: bug

#1065 - Bump sqlalchemy from 2.0.8 to 2.0.9

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#1064 - Allow unknown credentials

Pull Request - State: closed - Opened by niklassiemer over 1 year ago
Labels: integration

#1063 - Update pandas to 2.0.0

Pull Request - State: closed - Opened by jan-janssen over 1 year ago - 1 comment

#1062 - Bump sqlalchemy from 1.4.46 to 2.0.8

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1061 - Compatibility of `lazy` and `remove`

Issue - State: open - Opened by samwaseda over 1 year ago - 1 comment

#1060 - Making new job classes

Pull Request - State: closed - Opened by liamhuber over 1 year ago - 2 comments
Labels: stale

#1059 - Allow md source files

Pull Request - State: closed - Opened by liamhuber over 1 year ago - 1 comment
Labels: stale

#1058 - Bump sqlalchemy from 1.4.46 to 2.0.7

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, integration

#1057 - Use pprint to represent DataContainers, not forcing HDFStubs

Pull Request - State: closed - Opened by niklassiemer over 1 year ago - 7 comments
Labels: stale

#1056 - Job ID on Remote HPC not matching local ID

Issue - State: open - Opened by pstaerk over 1 year ago - 9 comments

#1055 - Add WCI file

Pull Request - State: closed - Opened by jan-janssen over 1 year ago - 1 comment

#1054 - HasHDF: Use generic list_groups instead of list_dirs

Pull Request - State: closed - Opened by pmrv over 1 year ago
Labels: integration

#1053 - Bump sqlalchemy from 1.4.46 to 2.0.5.post1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment

#1052 - Bump tqdm from 4.64.1 to 4.65.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1051 - New Generic Job interface to unify input & output AND make jobs hashable

Issue - State: open - Opened by samwaseda over 1 year ago - 10 comments
Labels: enhancement, Feature request

#1050 - Parallel pyiron table

Pull Request - State: closed - Opened by jan-janssen over 1 year ago - 10 comments
Labels: format_black

#1049 - Bump sqlalchemy from 1.4.46 to 2.0.4

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#1048 - Hackathon docs changes

Pull Request - State: closed - Opened by liamhuber over 1 year ago - 7 comments
Labels: stale

#1047 - project pack raise warning when destination_path matches project path

Pull Request - State: closed - Opened by jan-janssen over 1 year ago - 4 comments
Labels: format_black

#1046 - Danger with project pack

Issue - State: closed - Opened by jan-janssen over 1 year ago - 2 comments

#1044 - Implement @to_hdf_decorator decorator

Pull Request - State: closed - Opened by jan-janssen over 1 year ago - 9 comments
Labels: format_black

#1043 - Downgrade sqlalchemy

Pull Request - State: closed - Opened by jan-janssen over 1 year ago

#1042 - Use safe __getitem__() to enable reloading jobs with special characters like spaces

Pull Request - State: closed - Opened by jan-janssen over 1 year ago
Labels: integration

#1041 - Raise warning when the job_name is changed

Pull Request - State: closed - Opened by jan-janssen over 1 year ago - 2 comments
Labels: stale

#1040 - Inconsistent Behavior if Space in Job Name

Issue - State: open - Opened by pstaerk over 1 year ago - 28 comments

#1039 - Bump sqlalchemy from 2.0.3 to 2.0.4

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1038 - Bump gitpython from 3.1.30 to 3.1.31

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1037 - Merge master

Pull Request - State: closed - Opened by jan-janssen over 1 year ago

#1036 - Clean `generic.py` and `core.py` - part 2

Pull Request - State: closed - Opened by jan-janssen over 1 year ago
Labels: integration

#1035 - Clean `generic.py` and `core.py` - part 1

Pull Request - State: closed - Opened by jan-janssen over 1 year ago - 1 comment
Labels: integration

#1034 - Clean `generic.py` and `core.py`

Pull Request - State: closed - Opened by samwaseda over 1 year ago - 5 comments
Labels: format_black

#1033 - Why are jobs removed in two places when `delete_existing_job=True`?

Issue - State: closed - Opened by samwaseda over 1 year ago - 2 comments

#1032 - Bump sqlalchemy from 2.0.1 to 2.0.3

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1031 - Rendering DataContainers on an ipython shell

Issue - State: open - Opened by jan-janssen over 1 year ago - 3 comments

#1030 - fix pyiron_atomistics project level create_job()

Pull Request - State: closed - Opened by jan-janssen over 1 year ago - 4 comments
Labels: format_black

#1029 - dots in job names fails for GenericMaster jobs

Issue - State: closed - Opened by jan-janssen over 1 year ago - 1 comment

#1028 - fix black formatting

Pull Request - State: closed - Opened by jan-janssen over 1 year ago

#1027 - Tell user to restart server when pyiron install ends

Pull Request - State: closed - Opened by samwaseda over 1 year ago - 2 comments
Labels: enhancement

#1026 - Inform user resources not installed

Issue - State: open - Opened by samwaseda over 1 year ago - 1 comment
Labels: enhancement, Feature request

#1025 - Bump sqlalchemy from 2.0.0 to 2.0.1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1024 - Bump traitlets from 5.8.1 to 5.9.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1023 - Bump numpy from 1.24.1 to 1.24.2

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1022 - Backwards compatiblity

Pull Request - State: closed - Opened by jan-janssen over 1 year ago

#1021 - Another sqlalchemy test

Pull Request - State: closed - Opened by jan-janssen over 1 year ago
Labels: format_black

#1020 - Continue to debug sqlalchemy

Pull Request - State: closed - Opened by jan-janssen over 1 year ago - 1 comment

#1019 - Back to mappings

Pull Request - State: closed - Opened by jan-janssen over 1 year ago - 1 comment
Labels: format_black

#1018 - Merge master

Pull Request - State: closed - Opened by jan-janssen over 1 year ago

#1017 - black formatting

Pull Request - State: closed - Opened by jan-janssen over 1 year ago

#1016 - Add warnings

Pull Request - State: closed - Opened by jan-janssen over 1 year ago
Labels: format_black

#1015 - Debug SQLalchemy

Pull Request - State: closed - Opened by jan-janssen over 1 year ago

#1014 - Merge Master

Pull Request - State: closed - Opened by jan-janssen over 1 year ago

#1013 - Fix broken Database tests

Pull Request - State: closed - Opened by jan-janssen over 1 year ago

#1012 - job_table: Check for str before checking for character

Pull Request - State: closed - Opened by pmrv over 1 year ago
Labels: bug

#1010 - Uniform database access to get child ids

Pull Request - State: closed - Opened by jan-janssen over 1 year ago
Labels: format_black

#1009 - Always store children in working directory of Master

Pull Request - State: closed - Opened by jan-janssen over 1 year ago

#1008 - Bump sqlalchemy from 1.4.46 to 2.0.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 6 comments
Labels: dependencies

#1006 - sqlalchemy 2.0.0 breaks pyiron

Issue - State: closed - Opened by jan-janssen over 1 year ago - 2 comments

#1005 - setting ProjectData to be lazy by default

Pull Request - State: closed - Opened by yasser-sulaiman over 1 year ago - 6 comments
Labels: integration

#1002 - Use builtin mappings() instead of looping in python

Pull Request - State: closed - Opened by pmrv over 1 year ago - 1 comment
Labels: enhancement, stale, integration, format_black, performance

#1001 - Allow external tags in `DataContainer`

Pull Request - State: closed - Opened by samwaseda over 1 year ago - 14 comments
Labels: enhancement

#1000 - Cleaner tests

Pull Request - State: closed - Opened by liamhuber over 1 year ago
Labels: integration

#994 - Update CI to pyiron/actions

Pull Request - State: closed - Opened by jan-janssen over 1 year ago - 2 comments
Labels: stale

#983 - Handle the "NOT-A-GIT-REPOSITORY" warning on import.

Issue - State: closed - Opened by pmrv over 1 year ago - 4 comments
Labels: documentation

#980 - Call the correct logging method

Pull Request - State: closed - Opened by pmrv over 1 year ago
Labels: bug, integration, format_black

#974 - Add high-level spec

Pull Request - State: closed - Opened by liamhuber over 1 year ago - 13 comments
Labels: documentation, stale, Discussion

#969 - Add a simple FileBrowser to JobCore

Pull Request - State: closed - Opened by pmrv over 1 year ago - 3 comments
Labels: enhancement, stale

#966 - Can we get rid of `job_name`?

Issue - State: open - Opened by samwaseda over 1 year ago - 1 comment
Labels: enhancement

#962 - Bump tables from 3.7.0 to 3.8.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 7 comments
Labels: dependencies

#960 - increase job_name character limit 50 -> 250

Pull Request - State: closed - Opened by ligerzero-ai over 1 year ago - 7 comments
Labels: stale

#959 - pyiron database refuses names that are too long (50 chars?)

Issue - State: closed - Opened by ligerzero-ai over 1 year ago - 4 comments
Labels: bug

#952 - [minor] Replace ValueError by KeyError in job hdf access

Pull Request - State: closed - Opened by samwaseda over 1 year ago - 2 comments
Labels: stale, integration

#951 - Tab completed loading

Pull Request - State: closed - Opened by liamhuber over 1 year ago - 34 comments
Labels: integration, format_black

#942 - Adds a job.kill() functionality that stops a job in the queueing system without removal of files and updates status.

Pull Request - State: closed - Opened by jan-janssen over 1 year ago - 4 comments
Labels: stale, integration

#938 - On label CI

Pull Request - State: closed - Opened by liamhuber over 1 year ago - 2 comments

#903 - Create hash from data content

Pull Request - State: closed - Opened by samwaseda over 1 year ago - 12 comments
Labels: enhancement, stale, format_black

#894 - Adds tail method to check output files & transparent support for compressed jobs

Pull Request - State: closed - Opened by pmrv over 1 year ago - 9 comments
Labels: enhancement, stale, integration, format_black

#886 - Update pack and unpack methods

Pull Request - State: closed - Opened by srmnitc over 1 year ago - 16 comments

#875 - Adds a job.kill() functionality that stops a job in the queueing system without removal of files and updates status.

Pull Request - State: closed - Opened by ligerzero-ai over 1 year ago - 3 comments
Labels: format_black

#870 - Unify master jobs

Pull Request - State: closed - Opened by samwaseda over 1 year ago - 20 comments
Labels: enhancement, stale, integration, format_black

#865 - Convert `np.ndarray` to `list` before storing in `GenericParameters`

Pull Request - State: closed - Opened by samwaseda over 1 year ago - 18 comments
Labels: enhancement, stale, integration