pyiron/pyiron_base issues and pull requests

#1286 - Implement ExecutableJobContainer

Pull Request - State: closed - Opened by jan-janssen 6 months ago - 3 comments
Labels: format_black

#1285 - Simplify submitting functions to the queue

Pull Request - State: closed - Opened by jan-janssen 6 months ago - 5 comments

#1284 - Enforce environment for subprocess

Pull Request - State: closed - Opened by jan-janssen 6 months ago - 1 comment

#1283 - Delete .github/delete-merged-branch-config.yml

Pull Request - State: closed - Opened by jan-janssen 6 months ago

#1282 - Update h5io_browser to 0.0.6

Pull Request - State: closed - Opened by jan-janssen 6 months ago

#1281 - Update traitlets to 5.14.1

Pull Request - State: closed - Opened by jan-janssen 6 months ago

#1280 - Update numpy to 1.26.3

Pull Request - State: closed - Opened by jan-janssen 6 months ago

#1279 - Update h5io to 0.0.4

Pull Request - State: closed - Opened by jan-janssen 6 months ago

#1278 - Update sqlalchemy to 2.0.25

Pull Request - State: closed - Opened by jan-janssen 6 months ago

#1277 - Update h5io_browser to 0.0.3

Pull Request - State: closed - Opened by jan-janssen 6 months ago

#1276 - [feedback wanted] Use regex for job table sorting

Pull Request - State: closed - Opened by samwaseda 6 months ago - 10 comments
Labels: enhancement, format_black

#1275 - no longer depend on h5io

Pull Request - State: closed - Opened by jan-janssen 6 months ago

#1274 - Update pysqa to 0.1.9

Pull Request - State: closed - Opened by jan-janssen 6 months ago

#1273 - Use _read_hdf() and _write_hdf() from h5io_browser

Pull Request - State: closed - Opened by jan-janssen 6 months ago
Labels: integration, format_black

#1272 - Avoid repetitions in job_table

Pull Request - State: closed - Opened by samwaseda 6 months ago
Labels: enhancement, integration

#1271 - Use h5io_browser package

Pull Request - State: closed - Opened by jan-janssen 6 months ago
Labels: integration

#1270 - Bump sqlalchemy from 2.0.23 to 2.0.24

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies

#1269 - Fix compatibility with atomistics

Pull Request - State: closed - Opened by jan-janssen 6 months ago
Labels: integration

#1268 - Storage: read_dict_from_hdf() add recursive parameter

Pull Request - State: closed - Opened by jan-janssen 6 months ago

#1267 - HDF interface: fix read_dict_from_hdf()

Pull Request - State: closed - Opened by jan-janssen 6 months ago

#1266 - Revert "DataContainer: split _to_hdf() "

Pull Request - State: closed - Opened by jan-janssen 6 months ago
Labels: integration, format_black

#1265 - Add tests for HDF5 helper functions

Pull Request - State: closed - Opened by jan-janssen 7 months ago

#1264 - TrainingContainer Integration tests fail

Issue - State: closed - Opened by jan-janssen 7 months ago

#1263 - FileHDFio: Add write_dict_to_hdf() and read_dict_from_hdf()

Pull Request - State: closed - Opened by jan-janssen 7 months ago - 1 comment

#1262 - Purge SerialMaster

Pull Request - State: closed - Opened by pmrv 7 months ago - 1 comment
Labels: integration

#1261 - DataContainer: split _to_hdf()

Pull Request - State: closed - Opened by jan-janssen 7 months ago

#1260 - HasHDF: Add _store_type_to_dict()

Pull Request - State: closed - Opened by jan-janssen 7 months ago

#1259 - Add read_dict_from_hdf5() function

Pull Request - State: closed - Opened by jan-janssen 7 months ago - 1 comment

#1258 - Workaround for SerialMaster

Pull Request - State: closed - Opened by pmrv 7 months ago - 1 comment
Labels: bug, integration

#1257 - Fix dill in dependencies

Pull Request - State: closed - Opened by jan-janssen 7 months ago

#1256 - Bump psutil from 5.9.5 to 5.9.7

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies

#1255 - Bump pyfileindex from 0.0.18 to 0.0.19

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies

#1254 - Bump pysqa from 0.1.7 to 0.1.8

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies

#1253 - Add create_new_job_type() function to dynamically initialize a job object

Pull Request - State: closed - Opened by jan-janssen 7 months ago - 8 comments
Labels: format_black

#1252 - Simplify the datacontainer clean up during to_hdf()

Pull Request - State: closed - Opened by jan-janssen 7 months ago

#1251 - Open HDF5 file only once

Pull Request - State: closed - Opened by jan-janssen 7 months ago - 4 comments
Labels: format_black

#1250 - GenericJob: add to_dict() and from_dict()

Pull Request - State: closed - Opened by jan-janssen 7 months ago
Labels: format_black

#1249 - GenericParameters: add to_dict() and from_dict()

Pull Request - State: closed - Opened by jan-janssen 7 months ago
Labels: format_black

#1248 - server: add to_dict() and from_dict() method

Pull Request - State: closed - Opened by jan-janssen 7 months ago

#1247 - HDF5 interface: add write_dict_to_hdf() and read_dict_from_hdf()

Pull Request - State: closed - Opened by jan-janssen 7 months ago - 4 comments
Labels: format_black

#1246 - Bump pandas from 2.1.3 to 2.1.4

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies

#1245 - Bump pint from 0.22 to 0.23

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies

#1244 - add tutorial on user defined jobs

Pull Request - State: closed - Opened by samwaseda 7 months ago - 5 comments

#1243 - Add maintenance function to update TYPE in HDF5 files

Pull Request - State: closed - Opened by pmrv 7 months ago - 3 comments
Labels: enhancement, integration, format_black

#1242 - Remove blosc2 dependency as it is now included in pytables

Pull Request - State: closed - Opened by jan-janssen 7 months ago - 1 comment

#1241 - Bump traitlets from 5.13.0 to 5.14.0

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies

#1240 - Bump tables from 3.9.1 to 3.9.2

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies

#1239 - pyproject sync pypi and conda

Pull Request - State: closed - Opened by jan-janssen 7 months ago

#1238 - Lower bound for tqdm

Pull Request - State: closed - Opened by jan-janssen 7 months ago

#1237 - Fix dependabot

Pull Request - State: closed - Opened by jan-janssen 7 months ago

#1236 - Switch to pyproject.toml

Pull Request - State: closed - Opened by jan-janssen 7 months ago - 1 comment
Labels: integration

#1235 - Use proper monotonic clock for benchmark

Pull Request - State: closed - Opened by pmrv 7 months ago - 2 comments

#1234 - Add a function to remap module paths for stored objects

Pull Request - State: closed - Opened by pmrv 7 months ago - 3 comments
Labels: bug, integration, format_black

#1233 - Spurius benchmark fail in unit tests

Issue - State: open - Opened by pmrv 7 months ago - 7 comments

#1232 - Update pyfileindex to 0.0.18 and pysqa to 0.1.7

Pull Request - State: closed - Opened by jan-janssen 7 months ago

#1231 - Bump pyfileindex from 0.0.13 to 0.0.16

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago - 2 comments
Labels: dependencies

#1230 - `queue_table` and `queue_table_global` not working?

Issue - State: open - Opened by samwaseda 7 months ago

#1229 - Use sphinx-rtd-theme

Pull Request - State: closed - Opened by jan-janssen 7 months ago

#1228 - Use inspect and load

Pull Request - State: closed - Opened by liamhuber 8 months ago

#1227 - Update pysqa to 0.1.4

Pull Request - State: closed - Opened by jan-janssen 8 months ago

#1226 - Update pyfileindex to 0.0.13

Pull Request - State: closed - Opened by jan-janssen 8 months ago

#1225 - Use trusted publisher action

Pull Request - State: closed - Opened by jan-janssen 8 months ago

#1224 - Bump numpy from 1.26.0 to 1.26.2

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago - 1 comment
Labels: dependencies

#1223 - Bump pandas from 2.1.2 to 2.1.3

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies

#1222 - Fix iterjobs() without database

Pull Request - State: closed - Opened by jan-janssen 8 months ago - 2 comments

#1221 - `iter_jobs()` fails without database

Issue - State: closed - Opened by jan-janssen 8 months ago

#1220 - Bump sqlalchemy from 2.0.22 to 2.0.23

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies

#1219 - Bump traitlets from 5.12.0 to 5.13.0

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies

#1218 - Bump pandas from 2.1.1 to 2.1.2

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies

#1217 - Bump traitlets from 5.11.2 to 5.12.0

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies

#1216 - Bump gitpython from 3.1.37 to 3.1.40

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago
Labels: dependencies

#1215 - WIP: Implement #844 (bulk delete jobs)

Pull Request - State: open - Opened by pmrv 9 months ago - 3 comments
Labels: enhancement, stale, performance

#1214 - Bump psutil from 5.9.5 to 5.9.6

Pull Request - State: closed - Opened by jan-janssen 9 months ago - 2 comments

#1213 - Revert "Bump psutil from 5.9.5 to 5.9.6"

Pull Request - State: closed - Opened by jan-janssen 9 months ago

#1212 - Bump h5py from 3.9.0 to 3.10.0

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago - 2 comments
Labels: dependencies

#1211 - Bump sqlalchemy from 2.0.21 to 2.0.22

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago - 1 comment
Labels: dependencies

#1210 - Bump numpy from 1.26.0 to 1.26.1

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago - 2 comments
Labels: dependencies

#1209 - Bump psutil from 5.9.5 to 5.9.6

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago - 5 comments
Labels: dependencies

#1208 - Pulling out super small modules?

Issue - State: open - Opened by liamhuber 9 months ago - 3 comments

#1207 - FlattenedStorage: Allow export to pandas dataframes

Pull Request - State: closed - Opened by pmrv 9 months ago
Labels: enhancement, format_black

#1206 - Bump pyfileindex from 0.0.11 to 0.0.12

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago
Labels: dependencies

#1205 - Bump tables from 3.8.0 to 3.9.1

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago
Labels: dependencies

#1204 - Bump traitlets from 5.10.1 to 5.11.2

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago
Labels: dependencies

#1203 - Move git import inside the function

Pull Request - State: closed - Opened by jan-janssen 9 months ago

#1202 - merge master

Pull Request - State: closed - Opened by jan-janssen 9 months ago

#1201 - Debug dependencies

Pull Request - State: closed - Opened by jan-janssen 9 months ago

#1200 - Debug crashing jobs on executor with Python 3.11

Pull Request - State: closed - Opened by jan-janssen 9 months ago - 2 comments

#1199 - pysqa update to 0.1.3

Pull Request - State: closed - Opened by jan-janssen 9 months ago

#1198 - versioneer update to 0.29

Pull Request - State: closed - Opened by jan-janssen 9 months ago - 2 comments

#1197 - Bump traitlets from 5.10.0 to 5.10.1

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago
Labels: dependencies

#1196 - Bump gitpython from 3.1.36 to 3.1.37

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago
Labels: dependencies

#1195 - Bump sqlalchemy from 2.0.20 to 2.0.21

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago
Labels: dependencies

#1194 - Bump pandas from 2.1.0 to 2.1.1

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago
Labels: dependencies

#1193 - suggestions from pmd general assembly

Issue - State: open - Opened by ligerzero-ai 10 months ago - 5 comments
Labels: enhancement

#1192 - Bump numpy from 1.24.3 to 1.26.0

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 2 comments
Labels: dependencies

#1191 - Bump traitlets from 5.9.0 to 5.10.0

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 1 comment
Labels: dependencies

#1190 - Bump gitpython from 3.1.35 to 3.1.36

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 1 comment
Labels: dependencies

#1189 - Bump pysqa from 0.1.1 to 0.1.2

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago
Labels: dependencies

#1188 - If JOB_CLASS_DICT contains class return early

Pull Request - State: closed - Opened by pmrv 10 months ago
Labels: bug, integration

#1187 - Revert "Bump numpy from 1.24.3 to 1.25.2"

Pull Request - State: closed - Opened by jan-janssen 10 months ago

GitHub / pyiron/pyiron_base issues and pull requests