Ecosyste.ms: Issues

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GitHub / pyiron/pyiron_base issues and pull requests

#1386 - `GenericJob.executor_type` needs documentation

Issue - State: open - Opened by liamhuber 4 months ago

#1385 - Bump traitlets from 5.14.1 to 5.14.2

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#1384 - pyiron table: Use with-statement for executor

Pull Request - State: closed - Opened by jan-janssen 4 months ago - 8 comments

#1383 - Disable multi-core pyiron table test for mac os x

Pull Request - State: closed - Opened by jan-janssen 4 months ago - 6 comments

#1382 - Just for debugging: Try to find broken test on Mac Os X

Pull Request - State: closed - Opened by jan-janssen 4 months ago

#1381 - ScriptJob: from to_hdf() and from_hdf()

Pull Request - State: closed - Opened by jan-janssen 4 months ago

#1380 - job.server: remove to_hdf() and from_hdf()

Pull Request - State: closed - Opened by jan-janssen 4 months ago - 1 comment
Labels: format_black

#1379 - Datamining: Use to_dict() and from_dict()

Pull Request - State: closed - Opened by jan-janssen 4 months ago
Labels: format_black

#1377 - Executable: Switch from HasHDF to HasDict

Pull Request - State: closed - Opened by jan-janssen 4 months ago - 2 comments
Labels: format_black

#1376 - warn if job could not be deleted

Pull Request - State: closed - Opened by XzzX 4 months ago

#1375 - raise exception on failed delete from database

Pull Request - State: closed - Opened by XzzX 4 months ago - 5 comments

#1374 - FlattenedStorage.split modifies original storage

Issue - State: open - Opened by pmrv 4 months ago
Labels: bug

#1372 - Extend conda interface: store conda environments in project

Pull Request - State: closed - Opened by jan-janssen 4 months ago - 7 comments
Labels: format_black

#1371 - More flexible conda environments

Issue - State: closed - Opened by jan-janssen 4 months ago

#1370 - Switch to use conda as default

Pull Request - State: closed - Opened by jan-janssen 4 months ago - 1 comment

#1369 - pyiron table: Change default executor to "pympipool.mpi.executor.PyMPIExecutor"

Pull Request - State: closed - Opened by jan-janssen 4 months ago - 1 comment

#1368 - Bump sqlalchemy from 2.0.27 to 2.0.28

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#1367 - `GenericJob.save` just keeps copying things

Issue - State: open - Opened by liamhuber 4 months ago - 6 comments

#1366 - Bump monty from 2024.2.2 to 2024.2.26

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#1365 - Add Lockable to FlattenedStorage

Pull Request - State: closed - Opened by pmrv 4 months ago - 1 comment
Labels: enhancement

#1364 - Add two classes for HasHDF/HasDict compat

Pull Request - State: open - Opened by pmrv 4 months ago - 8 comments
Labels: enhancement

#1363 - Increase timeout from 5min to 10min

Pull Request - State: closed - Opened by jan-janssen 4 months ago - 2 comments
Labels: stale

#1362 - Tables broken with default executor

Issue - State: closed - Opened by pmrv 4 months ago - 1 comment
Labels: bug

#1361 - Bump pandas from 2.2.0 to 2.2.1

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago - 3 comments
Labels: dependencies

#1360 - Bump pysqa from 0.1.15 to 0.1.16

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#1359 - Bump pympipool from 0.7.13 to 0.7.15

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#1358 - [minor] Opt in hash for pythonfunction

Pull Request - State: closed - Opened by liamhuber 4 months ago - 5 comments
Labels: format_black

#1357 - OSX 12 tests are sometime timing out

Issue - State: closed - Opened by liamhuber 4 months ago - 3 comments

#1356 - [patch] Introduce a flag for _not_ mangling the name of wrapped function jobs

Pull Request - State: closed - Opened by liamhuber 4 months ago - 2 comments
Labels: format_black

#1355 - Use keyword args for Dataframe.to_hdf

Pull Request - State: closed - Opened by pmrv 4 months ago

#1354 - How to use DataContainer in inspect mode?

Issue - State: open - Opened by jan-janssen 4 months ago - 2 comments

#1352 - Fix the project type when the project is reloaded

Pull Request - State: closed - Opened by jan-janssen 4 months ago - 1 comment

#1351 - Project type is not correctly set when reloading jobs

Issue - State: closed - Opened by jan-janssen 4 months ago - 1 comment

#1350 - Move get_job{,_ids} to IsDatabase

Pull Request - State: closed - Opened by pmrv 4 months ago
Labels: format_black

#1349 - Remove project.sql_query

Pull Request - State: open - Opened by pmrv 4 months ago - 2 comments
Labels: stale, integration

#1348 - `Project.wrap_python_function` does not play nicely with name lengths

Issue - State: open - Opened by liamhuber 5 months ago - 5 comments

#1347 - loading jobs very slow

Issue - State: closed - Opened by ahmedabdelkawy 5 months ago - 5 comments

#1346 - Merge main

Pull Request - State: closed - Opened by jan-janssen 5 months ago

#1345 - Bump sqlalchemy from 2.0.26 to 2.0.27

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#1344 - Bump gitpython from 3.1.41 to 3.1.42

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#1343 - Try to access files after HDF

Pull Request - State: closed - Opened by pmrv 5 months ago
Labels: performance

#1342 - merge main

Pull Request - State: closed - Opened by jan-janssen 5 months ago

#1341 - Catch signal of aborted job in job wrapper

Pull Request - State: closed - Opened by jan-janssen 5 months ago - 1 comment

#1340 - Fix test timeout to 5 minutes

Pull Request - State: closed - Opened by jan-janssen 5 months ago

#1339 - New release -- patch or minor

Issue - State: closed - Opened by liamhuber 5 months ago - 5 comments

#1338 - Update h5io_browser to 0.0.9

Pull Request - State: closed - Opened by jan-janssen 5 months ago

#1337 - Do not fail hdf type update if project data missing

Pull Request - State: closed - Opened by pmrv 5 months ago
Labels: bug

#1336 - Fix regression on #1188

Pull Request - State: closed - Opened by pmrv 5 months ago
Labels: bug

#1335 - Fix multi dimensional arrays with FlattenedStorage.to_pandas

Pull Request - State: open - Opened by pmrv 5 months ago - 1 comment
Labels: bug, stale

#1334 - Use the same executor for pyiron table and function container

Pull Request - State: closed - Opened by jan-janssen 5 months ago - 3 comments
Labels: format_black

#1333 - Clean traceback when trying to import a moved module

Pull Request - State: closed - Opened by pmrv 5 months ago
Labels: enhancement

#1332 - Refactor database interface

Pull Request - State: closed - Opened by jan-janssen 5 months ago
Labels: format_black

#1331 - Refactor database interface

Pull Request - State: closed - Opened by jan-janssen 5 months ago

#1330 - Test old monty version

Pull Request - State: closed - Opened by jan-janssen 5 months ago

#1329 - job.files: raise FileNotFoundError rather than AttributeError or KeyError

Pull Request - State: closed - Opened by jan-janssen 5 months ago - 1 comment

#1328 - Replace job.list_files() with job.files.list()

Pull Request - State: closed - Opened by jan-janssen 5 months ago

#1326 - Accelerate removing of jobs by removing consistency check

Pull Request - State: closed - Opened by jan-janssen 5 months ago - 3 comments

#1325 - get_jobs() filter for columns directly

Pull Request - State: closed - Opened by jan-janssen 5 months ago - 2 comments

#1324 - remove unnecessary database queries

Pull Request - State: closed - Opened by XzzX 5 months ago
Labels: format_black

#1323 - Include files outside the archive in job.files.list()

Pull Request - State: closed - Opened by jan-janssen 5 months ago
Labels: format_black

#1322 - Add more tests for job.files.list()

Pull Request - State: closed - Opened by jan-janssen 5 months ago

#1321 - Bump numpy from 1.26.3 to 1.26.4

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago - 5 comments
Labels: dependencies

#1320 - Bump sqlalchemy from 2.0.25 to 2.0.26

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#1319 - Bump tqdm from 4.66.1 to 4.66.2

Pull Request - State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#1318 - Add core.* files to .gitignore

Pull Request - State: closed - Opened by jan-janssen 5 months ago

#1317 - Remove sql_query functionality to prepare unified db backends

Pull Request - State: open - Opened by niklassiemer 5 months ago - 1 comment

#1316 - Update pysqa to 0.1.14

Pull Request - State: closed - Opened by jan-janssen 5 months ago

#1315 - Execute jobs in separate conda environments

Pull Request - State: closed - Opened by jan-janssen 5 months ago - 4 comments
Labels: format_black

#1314 - Do not import pint when it is not needed

Pull Request - State: closed - Opened by jan-janssen 5 months ago - 2 comments
Labels: format_black

#1313 - Do not import sqlalchemy when running without database

Pull Request - State: closed - Opened by jan-janssen 5 months ago
Labels: format_black

#1312 - add wrap_executable() function to project

Pull Request - State: closed - Opened by jan-janssen 5 months ago - 5 comments

#1311 - Add output files class

Pull Request - State: closed - Opened by jan-janssen 5 months ago - 1 comment
Labels: format_black

#1310 - Update pysqa to 0.1.13

Pull Request - State: closed - Opened by jan-janssen 5 months ago

#1309 - Accelerate import of pyiron_base by 18%

Pull Request - State: closed - Opened by jan-janssen 5 months ago
Labels: format_black

#1308 - No longer require functions for create_job_factory()

Pull Request - State: closed - Opened by jan-janssen 5 months ago
Labels: format_black

#1307 - Update pysqa 0.1.12

Pull Request - State: closed - Opened by jan-janssen 5 months ago

#1306 - Handle executable not found errors

Pull Request - State: closed - Opened by jan-janssen 5 months ago

#1305 - Use the delete_file_on_remote option in transfer_file_to_remote()

Pull Request - State: closed - Opened by jan-janssen 5 months ago - 1 comment

#1304 - Fix read_dict_from_hdf() when using overlapping paths

Pull Request - State: closed - Opened by jan-janssen 5 months ago
Labels: format_black

#1303 - Job class creator can be static

Pull Request - State: closed - Opened by liamhuber 5 months ago

#1302 - Patch ExecutableContainerJob example

Pull Request - State: closed - Opened by liamhuber 5 months ago

#1301 - Fix wait_for_job() when for jobs with executors

Pull Request - State: closed - Opened by jan-janssen 5 months ago - 1 comment

#1300 - Fix reloading of executables for flexible jobs

Pull Request - State: closed - Opened by jan-janssen 5 months ago

#1299 - Split DataContainer to a HDF and non HDF part

Pull Request - State: closed - Opened by pmrv 5 months ago - 6 comments
Labels: integration, format_black

#1298 - Change docs design

Pull Request - State: closed - Opened by jan-janssen 5 months ago

#1297 - Update Documentation

Pull Request - State: closed - Opened by jan-janssen 5 months ago - 1 comment
Labels: format_black

#1296 - Enable parallelism inside the PythonFunctionContainerJob

Pull Request - State: closed - Opened by jan-janssen 5 months ago - 1 comment

#1295 - Officially add Python 3.12 support

Pull Request - State: closed - Opened by jan-janssen 5 months ago

#1293 - Execute external executable in separate conda environment

Pull Request - State: closed - Opened by jan-janssen 5 months ago - 2 comments
Labels: format_black

#1292 - Bump pandas from 2.1.4 to 2.2.0

Pull Request - State: open - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#1291 - Update psutil to 5.9.8

Pull Request - State: closed - Opened by jan-janssen 6 months ago

#1290 - Update jinja2, pysqa and gitpython

Pull Request - State: closed - Opened by jan-janssen 6 months ago

#1289 - Project: Add __getstate__() and __setstate__()

Pull Request - State: closed - Opened by jan-janssen 6 months ago - 2 comments

#1288 - fix coverage

Pull Request - State: closed - Opened by jan-janssen 6 months ago

#1287 - Remove dynamic jobs

Pull Request - State: closed - Opened by jan-janssen 6 months ago - 4 comments
Labels: integration, format_black