Ecosyste.ms: Issues

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GitHub / pyiron/pyiron_base issues and pull requests

#1647 - Update pandas and related dependencies

Pull Request - State: closed - Opened by jan-janssen 12 days ago

#1646 - Bump sqlalchemy from 2.0.34 to 2.0.35

Pull Request - State: closed - Opened by dependabot[bot] 17 days ago - 2 comments
Labels: dependencies, patch

#1645 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 17 days ago

#1644 - Bump conda-subprocess from 0.0.4 to 0.0.5

Pull Request - State: closed - Opened by dependabot[bot] 18 days ago
Labels: dependencies, patch

#1643 - Files: Fix windows compatibility

Pull Request - State: closed - Opened by jan-janssen 21 days ago - 2 comments
Labels: integration

#1642 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 24 days ago

#1641 - Add more docstrings and type hints

Pull Request - State: closed - Opened by jan-janssen 26 days ago - 2 comments

#1640 - Add Docstrings and type hints with Github Co-pilot

Pull Request - State: closed - Opened by jan-janssen 26 days ago

#1639 - Always use absolute path for restart files

Pull Request - State: closed - Opened by jan-janssen 27 days ago - 4 comments

#1638 - Bump sqlalchemy from 2.0.33 to 2.0.34

Pull Request - State: closed - Opened by dependabot[bot] 29 days ago - 1 comment
Labels: dependencies, patch

#1637 - Update integration tests and a new one for notebooks

Pull Request - State: closed - Opened by pmrv 29 days ago
Labels: integration

#1636 - Bump sqlalchemy from 2.0.32 to 2.0.33

Pull Request - State: closed - Opened by dependabot[bot] 30 days ago - 1 comment
Labels: dependencies, patch

#1635 - Bump numpy from 2.1.0 to 2.1.1

Pull Request - State: closed - Opened by dependabot[bot] 30 days ago - 1 comment
Labels: dependencies, patch

#1634 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 month ago

#1632 - Remove automatic recursive to_dict/from_dict again

Pull Request - State: closed - Opened by pmrv about 1 month ago - 3 comments
Labels: integration

#1631 - Only reset the job status for failed interactive jobs

Pull Request - State: closed - Opened by jan-janssen about 1 month ago

#1630 - hdf5 files are opened too often in DataContainer when loading SPHInX jobs

Issue - State: open - Opened by freyso about 1 month ago - 7 comments

#1629 - Inspect csv file without uncompressing `.tar.gz`

Pull Request - State: closed - Opened by samwaseda about 1 month ago

#1628 - Remove conda default channel

Pull Request - State: closed - Opened by jan-janssen about 1 month ago

#1627 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 month ago

#1626 - Features for `pack` and `unpack`

Issue - State: closed - Opened by samwaseda about 1 month ago
Labels: enhancement

#1625 - script job is not working

Issue - State: closed - Opened by jyang2009 about 1 month ago - 2 comments

#1624 - Merge main

Pull Request - State: closed - Opened by jan-janssen about 1 month ago

#1623 - Merge main

Pull Request - State: closed - Opened by jan-janssen about 1 month ago

#1622 - Bump executorlib from 0.0.1 to 0.0.2

Pull Request - State: closed - Opened by dependabot[bot] about 1 month ago
Labels: dependencies, patch

#1621 - Server2

Pull Request - State: closed - Opened by jan-janssen about 1 month ago

#1620 - Revert changes to DataContainer storage format

Pull Request - State: closed - Opened by pmrv about 1 month ago - 3 comments

#1619 - Get executable keys from dataclass fields

Pull Request - State: closed - Opened by jan-janssen about 1 month ago

#1618 - Exclude structure_id from server dict

Pull Request - State: closed - Opened by jan-janssen about 1 month ago - 3 comments

#1617 - [patch] Add pack backwards compatibility tests

Pull Request - State: closed - Opened by samwaseda about 1 month ago - 9 comments
Labels: patch

#1616 - Fix windows paths

Pull Request - State: closed - Opened by jan-janssen about 1 month ago

#1615 - Fix project mv

Pull Request - State: closed - Opened by jan-janssen about 1 month ago

#1614 - error in `pyiron mv`

Issue - State: closed - Opened by XzzX about 1 month ago - 1 comment

#1613 - Update integration tests

Pull Request - State: closed - Opened by jan-janssen about 1 month ago - 9 comments
Labels: integration

#1612 - Backwards compatible access to executable name during instantiate

Pull Request - State: closed - Opened by jan-janssen about 1 month ago

#1611 - Backwards compatible loading of server/executable

Pull Request - State: closed - Opened by pmrv about 1 month ago - 1 comment

#1610 - Catch all exception in pyiron table

Pull Request - State: closed - Opened by pmrv about 1 month ago

#1609 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 2 months ago

#1608 - Update h5io_browser to 0.1.0

Pull Request - State: closed - Opened by jan-janssen about 2 months ago

#1607 - Update pyfileindex to 0.0.27

Pull Request - State: closed - Opened by jan-janssen about 2 months ago - 1 comment

#1606 - Bump h5io-browser from 0.0.17 to 0.0.18

Pull Request - State: closed - Opened by dependabot[bot] about 2 months ago - 1 comment
Labels: dependencies, patch

#1605 - Bump numpy from 2.0.1 to 2.1.0

Pull Request - State: closed - Opened by dependabot[bot] about 2 months ago - 5 comments
Labels: dependencies, minor

#1604 - Interactive: Set status to aborted when job failed

Pull Request - State: closed - Opened by jan-janssen about 2 months ago

#1603 - Bump tables from 3.9.2 to 3.10.1

Pull Request - State: closed - Opened by dependabot[bot] about 2 months ago - 1 comment
Labels: dependencies, minor

#1602 - [minor] Recursive to/from_dict

Pull Request - State: closed - Opened by pmrv about 2 months ago
Labels: enhancement, integration, minor

#1601 - [patch] Use tempfile to open compressed data

Pull Request - State: closed - Opened by samwaseda about 2 months ago - 5 comments
Labels: patch

#1600 - Bump tables from 3.9.2 to 3.10.0

Pull Request - State: closed - Opened by dependabot[bot] about 2 months ago - 2 comments
Labels: dependencies, minor

#1599 - [patch] Append tag when patch, minor or major is added

Pull Request - State: closed - Opened by samwaseda about 2 months ago - 11 comments
Labels: enhancement, patch

#1598 - [patch] Unify `copy_to` and `move_to`

Pull Request - State: closed - Opened by samwaseda about 2 months ago
Labels: enhancement, patch

#1597 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 2 months ago

#1596 - [patch] Add warning when the same job is imported multiple times with `unpack`

Pull Request - State: closed - Opened by samwaseda about 2 months ago - 1 comment
Labels: code_smell, patch

#1595 - [patch] Restructure archive

Pull Request - State: closed - Opened by samwaseda about 2 months ago - 1 comment
Labels: patch

#1594 - Directory structure of `pack`

Issue - State: closed - Opened by samwaseda about 2 months ago - 2 comments

#1593 - Rewrite tests for pack

Pull Request - State: closed - Opened by samwaseda about 2 months ago

#1592 - Move import tests folder locations

Pull Request - State: open - Opened by pmrv about 2 months ago - 2 comments
Labels: patch

#1591 - Bump pyiron-snippets from 0.1.3 to 0.1.4

Pull Request - State: closed - Opened by dependabot[bot] about 2 months ago
Labels: dependencies, patch

#1590 - not use relpath by default

Pull Request - State: closed - Opened by samwaseda about 2 months ago
Labels: format_black, minor

#1589 - [patch] Not create tmp file when copying everything

Pull Request - State: closed - Opened by samwaseda about 2 months ago - 4 comments
Labels: patch

#1588 - Bump sqlalchemy from 2.0.31 to 2.0.32

Pull Request - State: closed - Opened by dependabot[bot] about 2 months ago - 1 comment
Labels: dependencies, patch

#1587 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 2 months ago

#1586 - Introduce `pyiron_mini`

Pull Request - State: open - Opened by jan-janssen about 2 months ago - 4 comments

#1585 - No copy directory

Pull Request - State: closed - Opened by samwaseda about 2 months ago

#1584 - Bump tqdm from 4.66.4 to 4.66.5

Pull Request - State: closed - Opened by dependabot[bot] about 2 months ago
Labels: dependencies, patch

#1583 - Add docstring to import jobs

Pull Request - State: closed - Opened by samwaseda 2 months ago
Labels: patch

#1582 - Only create temp_dir when compress=True

Pull Request - State: closed - Opened by samwaseda 2 months ago - 1 comment
Labels: format_black, patch

#1581 - Allow undefined pack destination

Pull Request - State: closed - Opened by samwaseda 2 months ago - 1 comment
Labels: enhancement, minor

#1580 - Executable Dataclass

Pull Request - State: closed - Opened by jan-janssen 2 months ago

#1579 - Remove send_to_db

Pull Request - State: closed - Opened by jan-janssen 2 months ago - 1 comment

#1578 - Server Dataclass

Pull Request - State: closed - Opened by jan-janssen 2 months ago - 1 comment

#1577 - Remove empty executable test

Pull Request - State: closed - Opened by pmrv 2 months ago

#1576 - Merge main

Pull Request - State: closed - Opened by jan-janssen 2 months ago

#1575 - Debug failing minimal tests

Pull Request - State: closed - Opened by jan-janssen 2 months ago

#1574 - Always write input files

Pull Request - State: closed - Opened by pmrv 2 months ago - 2 comments

#1573 - Set job.status.running again

Pull Request - State: closed - Opened by pmrv 2 months ago

#1572 - `_compress_by_default` no longer honored

Issue - State: closed - Opened by pmrv 2 months ago - 2 comments
Labels: bug

#1571 - delete extraction function because it became very short and give an e…

Pull Request - State: closed - Opened by samwaseda 2 months ago - 2 comments
Labels: patch

#1570 - Use tempfile

Pull Request - State: closed - Opened by samwaseda 2 months ago - 1 comment
Labels: code_smell, minor

#1569 - Merge main

Pull Request - State: closed - Opened by jan-janssen 2 months ago

#1568 - Merge main

Pull Request - State: closed - Opened by jan-janssen 2 months ago

#1567 - Add underscore to separate job name

Pull Request - State: closed - Opened by samwaseda 2 months ago

#1566 - Fix nfdi usecase tests failing

Pull Request - State: closed - Opened by jan-janssen 2 months ago

#1565 - Bump monty from 2024.7.12 to 2024.7.30

Pull Request - State: closed - Opened by dependabot[bot] 2 months ago - 2 comments
Labels: dependencies, patch

#1564 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 2 months ago

#1563 - Adapt GenericParameters

Pull Request - State: closed - Opened by pmrv 2 months ago

#1562 - Add deprecate warnings when indexing jobs directly

Pull Request - State: closed - Opened by pmrv 2 months ago
Labels: integration, format_black

#1560 - Change wrap function status when job starts running

Pull Request - State: closed - Opened by samwaseda 2 months ago

#1558 - [patch] Use tempfile instead of creating a directory

Pull Request - State: closed - Opened by samwaseda 2 months ago - 4 comments
Labels: format_black

#1557 - NFDI usecase seems to be broken

Issue - State: closed - Opened by jan-janssen 2 months ago - 1 comment

#1556 - Revert "[patch] Use `tempfile` instead of creating a directory"

Pull Request - State: closed - Opened by samwaseda 2 months ago

#1555 - [patch] Use `tempfile` instead of creating a directory

Pull Request - State: closed - Opened by samwaseda 2 months ago - 2 comments
Labels: code_smell, patch

#1554 - Update pyfileindex to 0.0.26 and h5io_browser to 0.0.17

Pull Request - State: closed - Opened by jan-janssen 2 months ago

#1553 - Add psycopg2 as optional dependency

Pull Request - State: open - Opened by jan-janssen 2 months ago

#1552 - conda installation doesn't work out of the box - ModuleNotFoundError psycopg2

Issue - State: open - Opened by ligerzero-ai 2 months ago - 2 comments
Labels: bug

#1551 - Restore sub directories

Pull Request - State: closed - Opened by samwaseda 2 months ago - 8 comments
Labels: bug, patch

#1550 - Refactor and add doc string (done by ChatGPT)

Pull Request - State: closed - Opened by samwaseda 2 months ago - 3 comments
Labels: format_black, patch

#1549 - Use `copytree` in `pack`

Pull Request - State: closed - Opened by samwaseda 2 months ago - 2 comments
Labels: enhancement, format_black, patch

#1548 - Enable Python 3.9 tests again

Pull Request - State: closed - Opened by jan-janssen 2 months ago