Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / pveber/bistro issues and pull requests

#54 - Examples do not build

Issue - State: open - Opened by patrick-nicodemus about 2 months ago

#53 - Documentation/tutorial

Issue - State: open - Opened by patrick-nicodemus about 2 months ago

#52 - Update getting-started.rst

Pull Request - State: open - Opened by patrick-nicodemus about 2 months ago

#51 - New opam release compatible with OCaml 5

Issue - State: open - Opened by patrick-nicodemus about 2 months ago

#50 - Update for compatibility with core 0.15.0

Pull Request - State: closed - Opened by bcc32 over 2 years ago - 1 comment

#49 - build failure with Ocaml 4.13

Issue - State: closed - Opened by bcdarwin about 3 years ago - 1 comment

#48 - bistro_script.ml: fix build with ppxlib 0.23

Pull Request - State: closed - Opened by bcdarwin about 3 years ago - 1 comment

#47 - build failure due to ppxlib 0.23 incompatibility

Issue - State: closed - Opened by bcdarwin about 3 years ago - 1 comment

#46 - Support for core.v0.13

Pull Request - State: closed - Opened by xclerc almost 5 years ago - 1 comment

#45 - Please specify license

Issue - State: closed - Opened by osallou over 5 years ago - 1 comment

#44 - singularity binds

Issue - State: open - Opened by pveber over 5 years ago

#43 - Give a name to docker containers...

Issue - State: open - Opened by pveber almost 6 years ago - 2 comments

#42 - wrapper for XXmotif

Issue - State: open - Opened by pveber almost 6 years ago

#41 - engine: add a "network bandwidth" resource

Issue - State: open - Opened by pveber almost 6 years ago - 1 comment

#40 - fix error when we don't want to use docker

Pull Request - State: closed - Opened by CarineRey almost 7 years ago - 1 comment

#39 - Correct blast

Pull Request - State: open - Opened by cecilpert almost 7 years ago - 1 comment

#38 - Add blast.ml to lib/bioinfo

Pull Request - State: open - Opened by cecilpert almost 7 years ago - 3 comments

#37 - added ea-utils and quast

Pull Request - State: open - Opened by lcastrogarcia almost 7 years ago

#36 - Fix docker image for prokka

Pull Request - State: closed - Opened by cecilpert about 7 years ago - 1 comment

#35 - Missing documentation items

Issue - State: open - Opened by pveber about 7 years ago

#34 - add detonate 1.11 Dockerfile with precompiled binaries

Pull Request - State: closed - Opened by virhostnet about 7 years ago

#33 - Have Bistro_logger.tee take a list of loggers

Issue - State: closed - Opened by pveber about 7 years ago - 1 comment

#32 - ppx: add parameters

Issue - State: closed - Opened by pveber about 7 years ago - 1 comment

#31 - add wrapper for featureCounts

Issue - State: closed - Opened by pveber about 7 years ago - 1 comment

#29 - docker mode does not work on mac os x

Issue - State: open - Opened by pveber about 7 years ago - 1 comment

#28 - add env variables in DSL

Issue - State: open - Opened by pveber over 7 years ago

#27 - added class type bed6 + bedtools bamtobed & samtools view wrappers + bcp dockerfile

Pull Request - State: closed - Opened by sylverebastien over 7 years ago - 1 comment

#26 - bioinfo/Bedtools: added intersect wrapper

Pull Request - State: closed - Opened by sylverebastien over 7 years ago

#25 - bioinfo/Deeptools & Fastq_screen: fixed compilation issues

Pull Request - State: closed - Opened by sylverebastien over 7 years ago - 1 comment

#24 - docker-images: added bioconductor 3.4

Pull Request - State: closed - Opened by sylverebastien over 7 years ago - 1 comment

#23 - added deeptools and fastq-screen (docker-files and modules)

Pull Request - State: closed - Opened by sylverebastien over 7 years ago

#22 - bioinfo/Deseq2: added directory method into ouput type

Pull Request - State: closed - Opened by sylverebastien almost 8 years ago - 1 comment

#21 - docker-images: added fastq-screen 0.9.4

Pull Request - State: closed - Opened by sylverebastien almost 8 years ago - 1 comment

#20 - Switch from docker to rkt

Issue - State: closed - Opened by pveber almost 8 years ago - 2 comments

#19 - bioinfo/Macs2: added keep-dup option

Pull Request - State: closed - Opened by sylverebastien about 8 years ago - 1 comment

#17 - bioinfo/Ucsc_gb: plugged bedclip wrapper

Pull Request - State: closed - Opened by sylverebastien about 8 years ago - 1 comment

#16 - Improve/simplify task description

Issue - State: open - Opened by pveber about 8 years ago

#15 - bioinfo/Meme_suite: fixed fimo and meme-chip options

Pull Request - State: closed - Opened by sylverebastien about 8 years ago

#14 - Don't run docker commands as root

Issue - State: open - Opened by pveber about 8 years ago

#13 - Fixed meme-chip multi processor issues. Added fimo and fastq_dump_to_fasta wrappers

Pull Request - State: closed - Opened by sylverebastien over 8 years ago - 1 comment

#12 - bioinfo/macs2: added summits.bed selector

Pull Request - State: closed - Opened by sylverebastien over 8 years ago - 2 comments

#11 - Generate relative links in a Bistro_app.plan

Issue - State: closed - Opened by CarineRey over 8 years ago - 1 comment

#10 - Delete intermediate targets while running

Issue - State: closed - Opened by CarineRey over 8 years ago - 2 comments

#9 - Fixed bioinfo/Ucsc_gb and replugged meme analysis

Pull Request - State: closed - Opened by sylverebastien over 8 years ago - 1 comment

#8 - Docker-images: kallisto and macs2

Pull Request - State: closed - Opened by sylverebastien over 8 years ago

#7 - docker-images: bumped bioconductor version to 3.3.1-1

Pull Request - State: closed - Opened by sylverebastien over 8 years ago

#6 - lib/bioinfo: fixed gff construction

Pull Request - State: closed - Opened by sylverebastien over 8 years ago

#5 - docker-images: bumped bowtie2 version to 2.2.9-2

Pull Request - State: closed - Opened by sylverebastien over 8 years ago

#4 - Serialization of workflows is space-inefficient

Issue - State: closed - Opened by pveber over 8 years ago - 1 comment

#2 - Write a FAQ in the wiki

Issue - State: open - Opened by pveber almost 9 years ago

#1 - Make a pipeline for phylogeny

Issue - State: open - Opened by pveber almost 9 years ago