protprotocols/isoprot issues and pull requests

#47 - Improve feedback on progress

Issue - State: closed - Opened by veitveit over 6 years ago - 1 comment
Labels: enhancement

#47 - Improve feedback on progress

Issue - State: closed - Opened by veitveit over 6 years ago - 1 comment
Labels: enhancement

#46 - Set correct default experimental design for test case

Issue - State: closed - Opened by veitveit over 6 years ago - 5 comments
Labels: enhancement, needs testing

#46 - Set correct default experimental design for test case

Issue - State: closed - Opened by veitveit over 6 years ago - 5 comments
Labels: enhancement, needs testing

#45 - Add parameter for peptide inference

Issue - State: open - Opened by veitveit over 6 years ago - 7 comments
Labels: enhancement, question

#45 - Add parameter for peptide inference

Issue - State: open - Opened by veitveit over 6 years ago - 7 comments
Labels: enhancement, question

#44 - Memory usage of PeptideShaker?

Issue - State: closed - Opened by veitveit over 6 years ago - 4 comments
Labels: bug, question

#44 - Memory usage of PeptideShaker?

Issue - State: closed - Opened by veitveit over 6 years ago - 4 comments
Labels: bug, question

#43 - Ability for calling web services (downstream)

Issue - State: open - Opened by veitveit over 6 years ago

#43 - Ability for calling web services (downstream)

Issue - State: open - Opened by veitveit over 6 years ago

#42 - Simple option to download entire worksheet and/or figures

Issue - State: open - Opened by veitveit over 6 years ago - 2 comments
Labels: enhancement

#42 - Simple option to download entire worksheet and/or figures

Issue - State: open - Opened by veitveit over 6 years ago - 2 comments
Labels: enhancement

#41 - Make different MS runs comparable

Issue - State: closed - Opened by veitveit over 6 years ago - 5 comments
Labels: enhancement, question

#41 - Make different MS runs comparable

Issue - State: closed - Opened by veitveit over 6 years ago - 5 comments
Labels: enhancement, question

#40 - create a run.bat

Issue - State: closed - Opened by gvinterhalter over 6 years ago - 7 comments
Labels: enhancement, needs testing

#40 - create a run.bat

Issue - State: closed - Opened by gvinterhalter over 6 years ago - 7 comments
Labels: enhancement, needs testing

#39 - veitveit/isolabeledprotocol or label_pipeline

Issue - State: closed - Opened by gvinterhalter over 6 years ago - 2 comments
Labels: question

#39 - veitveit/isolabeledprotocol or label_pipeline

Issue - State: closed - Opened by gvinterhalter over 6 years ago - 2 comments
Labels: question

#38 - Scripts change working directory and break search

Issue - State: closed - Opened by jgriss over 6 years ago - 4 comments
Labels: bug

#38 - Scripts change working directory and break search

Issue - State: closed - Opened by jgriss over 6 years ago - 4 comments
Labels: bug

#37 - Automatics mount of data and OUT folders

Issue - State: closed - Opened by veitveit over 6 years ago - 8 comments

#37 - Automatics mount of data and OUT folders

Issue - State: closed - Opened by veitveit over 6 years ago - 8 comments

#36 - Update configuration settings when changing the parameters

Issue - State: closed - Opened by veitveit over 6 years ago - 4 comments
Labels: enhancement

#35 - Reset button

Issue - State: closed - Opened by veitveit over 6 years ago - 2 comments
Labels: enhancement, needs testing

#34 - Reorder widgets and disable in the right order

Issue - State: closed - Opened by veitveit over 6 years ago - 3 comments
Labels: enhancement

#33 - Identify data sets for testing

Issue - State: closed - Opened by veitveit over 6 years ago - 5 comments
Labels: question

#32 - Allow more than 2 experimental conditions

Issue - State: closed - Opened by veitveit over 6 years ago - 1 comment
Labels: enhancement, question

#31 - Regain original functionality

Issue - State: closed - Opened by veitveit over 6 years ago - 5 comments
Labels: bug

#30 - Experimental design does not update on labelling method

Issue - State: closed - Opened by veitveit over 6 years ago - 1 comment
Labels: bug

#29 - Set correct default parameter values

Issue - State: closed - Opened by veitveit over 6 years ago - 1 comment
Labels: bug

#28 - Separate search and GUI functionality

Issue - State: closed - Opened by jgriss over 6 years ago - 15 comments
Labels: enhancement

#27 - Add warning if multiple MGF files are found

Issue - State: closed - Opened by jgriss over 6 years ago - 2 comments
Labels: enhancement

#26 - Evaluate methods for compositional analysis

Issue - State: open - Opened by jgriss over 6 years ago - 1 comment
Labels: enhancement

#25 - Separation of GUI, Data and Searching

Issue - State: closed - Opened by gvinterhalter over 6 years ago - 10 comments
Labels: enhancement, discussion

#24 - Move Python search code to a separte python file

Issue - State: closed - Opened by jgriss over 6 years ago
Labels: enhancement

#23 - Add auto methods section function

Issue - State: closed - Opened by jgriss over 6 years ago - 3 comments
Labels: enhancement, needs testing

#22 - Add checkbox for every variable PTM whether it should be included in the quantification

Issue - State: open - Opened by jgriss over 6 years ago
Labels: enhancement

#21 - Add extensive documentation/explanation of results and figures

Issue - State: closed - Opened by veitveit almost 7 years ago - 6 comments
Labels: enhancement, needs testing

#20 - Set stage to run new analysis

Issue - State: closed - Opened by veitveit almost 7 years ago - 2 comments
Labels: bug

#19 - Substitute PeptideShaker processing by MSnbase functions?

Issue - State: closed - Opened by veitveit almost 7 years ago - 4 comments
Labels: question, wontfix

#18 - Widgets to set parameters for quantification and statistics

Issue - State: closed - Opened by veitveit almost 7 years ago - 4 comments
Labels: enhancement

#17 - Define or create useful example data

Issue - State: closed - Opened by veitveit almost 7 years ago - 1 comment

#16 - Define and implement plots for QC and results

Issue - State: closed - Opened by veitveit almost 7 years ago - 1 comment
Labels: enhancement

#15 - Add Protein-level FDR filter

Issue - State: open - Opened by jgriss almost 7 years ago - 3 comments
Labels: enhancement, question

#14 - Example.ipynb isn't trusted

Issue - State: closed - Opened by jgriss almost 7 years ago - 1 comment
Labels: bug, Docker image

#13 - Add continuous integration tests for docker image

Issue - State: open - Opened by jgriss almost 7 years ago - 1 comment
Labels: enhancement, Docker image

#12 - Automatic R package installation fails (ie. isobar)

Issue - State: closed - Opened by jgriss almost 7 years ago
Labels: bug, Docker image

#11 - Disable PeptideShaker's function to fetch annotations

Issue - State: closed - Opened by jgriss almost 7 years ago - 1 comment

#10 - Add a license

Issue - State: closed - Opened by jgriss almost 7 years ago - 8 comments
Labels: question

#9 - Use stable MSnbase version

Issue - State: closed - Opened by jgriss almost 7 years ago - 3 comments
Labels: Docker image

#8 - Save all configurations in a file

Issue - State: closed - Opened by jgriss almost 7 years ago
Labels: enhancement

#7 - Add a protein summarization function

Issue - State: closed - Opened by jgriss almost 7 years ago - 1 comment
Labels: enhancement

#6 - Add a protein inference function

Issue - State: closed - Opened by jgriss almost 7 years ago - 3 comments
Labels: enhancement

#5 - Evaluate TMTc

Issue - State: closed - Opened by jgriss almost 7 years ago - 1 comment
Labels: enhancement, wontfix

#4 - Add possibility of samples that are arranged in different folders

Issue - State: closed - Opened by jgriss almost 7 years ago - 5 comments
Labels: enhancement, help wanted

#3 - Control workflow through buttons

Issue - State: closed - Opened by jgriss almost 7 years ago
Labels: enhancement

#2 - MSnbase is not installed

Issue - State: closed - Opened by jgriss almost 7 years ago - 1 comment
Labels: bug, Docker image

#1 - rebase on the dockerfile built at eubic2018

Pull Request - State: closed - Opened by ninewise about 7 years ago

GitHub / protprotocols/isoprot issues and pull requests