protprotocols/isoprot issues and pull requests

#97 - Upload a list of modifications

Issue - State: open - Opened by nilitiko over 3 years ago - 5 comments

#97 - Upload a list of modifications

Issue - State: open - Opened by nilitiko over 3 years ago - 5 comments

#96 - Deploying IsoProt using Singularity

Issue - State: open - Opened by ssamberkar over 4 years ago - 5 comments
Labels: question

#96 - Deploying IsoProt using Singularity

Issue - State: open - Opened by ssamberkar over 4 years ago - 5 comments
Labels: question

#95 - Output normalization ratios for QC

Issue - State: open - Opened by veitveit almost 6 years ago
Labels: enhancement

#95 - Output normalization ratios for QC

Issue - State: open - Opened by veitveit almost 6 years ago
Labels: enhancement

#94 - Move to Jupyter Lab

Issue - State: open - Opened by veitveit almost 6 years ago
Labels: enhancement

#94 - Move to Jupyter Lab

Issue - State: open - Opened by veitveit almost 6 years ago
Labels: enhancement

#93 - Add support for RawTools?

Issue - State: open - Opened by chrishuges almost 6 years ago - 2 comments

#93 - Add support for RawTools?

Issue - State: open - Opened by chrishuges almost 6 years ago - 2 comments

#92 - Add TMT11, TMT7, iTRAQ5 and iTRAQ9

Issue - State: open - Opened by veitveit almost 6 years ago - 1 comment
Labels: enhancement

#92 - Add TMT11, TMT7, iTRAQ5 and iTRAQ9

Issue - State: open - Opened by veitveit almost 6 years ago - 1 comment
Labels: enhancement

#91 - SearchUI fails silently on writing the output files

Issue - State: open - Opened by iustin94 about 6 years ago
Labels: bug

#91 - SearchUI fails silently on writing the output files

Issue - State: open - Opened by iustin94 about 6 years ago
Labels: bug

#90 - Preliminary assesment of files

Issue - State: open - Opened by iustin94 about 6 years ago - 2 comments
Labels: enhancement

#90 - Preliminary assesment of files

Issue - State: open - Opened by iustin94 about 6 years ago - 2 comments
Labels: enhancement

#89 - Facilitate manual change of isotope corrections

Issue - State: open - Opened by veitveit about 6 years ago - 3 comments
Labels: enhancement, discussion

#89 - Facilitate manual change of isotope corrections

Issue - State: open - Opened by veitveit about 6 years ago - 3 comments
Labels: enhancement, discussion

#88 - Unhandled exception in check_file_printing

Issue - State: closed - Opened by iustin94 about 6 years ago - 1 comment
Labels: bug

#88 - Unhandled exception in check_file_printing

Issue - State: closed - Opened by iustin94 about 6 years ago - 1 comment
Labels: bug

#87 - Verbose execution

Issue - State: closed - Opened by iustin94 about 6 years ago

#87 - Verbose execution

Issue - State: closed - Opened by iustin94 about 6 years ago

#86 - R version lets new bioconductor packages fail

Issue - State: closed - Opened by veitveit about 6 years ago - 3 comments
Labels: bug

#86 - R version lets new bioconductor packages fail

Issue - State: closed - Opened by veitveit about 6 years ago - 3 comments
Labels: bug

#85 - Minimize image size

Issue - State: closed - Opened by iustin94 about 6 years ago - 2 comments
Labels: enhancement

#85 - Minimize image size

Issue - State: closed - Opened by iustin94 about 6 years ago - 2 comments
Labels: enhancement

#84 - Test if output directory is writeable

Issue - State: open - Opened by jgriss over 6 years ago
Labels: enhancement

#84 - Test if output directory is writeable

Issue - State: open - Opened by jgriss over 6 years ago
Labels: enhancement

#83 - Find option to download workbook without code cells

Issue - State: open - Opened by jgriss over 6 years ago
Labels: enhancement

#83 - Find option to download workbook without code cells

Issue - State: open - Opened by jgriss over 6 years ago
Labels: enhancement

#82 - Notificaton messages are displayed multiple times

Issue - State: open - Opened by jgriss over 6 years ago
Labels: bug

#82 - Notificaton messages are displayed multiple times

Issue - State: open - Opened by jgriss over 6 years ago
Labels: bug

#81 - Improve the README a bit (more newbie friendly)

Issue - State: closed - Opened by joncison over 6 years ago - 8 comments
Labels: enhancement

#81 - Improve the README a bit (more newbie friendly)

Issue - State: closed - Opened by joncison over 6 years ago - 8 comments
Labels: enhancement

#80 - HTML message boxes not rendered in PDF output

Issue - State: open - Opened by jgriss over 6 years ago
Labels: bug

#80 - HTML message boxes not rendered in PDF output

Issue - State: open - Opened by jgriss over 6 years ago
Labels: bug

#79 - Re-opening a workbook causes very high load

Issue - State: closed - Opened by jgriss over 6 years ago - 2 comments
Labels: bug

#79 - Re-opening a workbook causes very high load

Issue - State: closed - Opened by jgriss over 6 years ago - 2 comments
Labels: bug

#78 - Methods section not rendered in HTML output

Issue - State: open - Opened by jgriss over 6 years ago
Labels: bug

#78 - Methods section not rendered in HTML output

Issue - State: open - Opened by jgriss over 6 years ago
Labels: bug

#77 - Ugly error is being displayed in case the config file doesn't fit the version

Issue - State: closed - Opened by jgriss over 6 years ago
Labels: bug

#77 - Ugly error is being displayed in case the config file doesn't fit the version

Issue - State: closed - Opened by jgriss over 6 years ago
Labels: bug

#76 - Cache MSnbase peaklist object

Issue - State: closed - Opened by jgriss over 6 years ago
Labels: enhancement

#76 - Cache MSnbase peaklist object

Issue - State: closed - Opened by jgriss over 6 years ago
Labels: enhancement

#75 - Add selection box for PSM-level normalisation

Issue - State: closed - Opened by jgriss over 6 years ago - 4 comments
Labels: enhancement, question

#75 - Add selection box for PSM-level normalisation

Issue - State: closed - Opened by jgriss over 6 years ago - 4 comments
Labels: enhancement, question

#74 - Add minimum fold-change as parameter

Issue - State: open - Opened by jgriss over 6 years ago

#74 - Add minimum fold-change as parameter

Issue - State: open - Opened by jgriss over 6 years ago

#73 - Run full workflow from command line

Issue - State: open - Opened by veitveit over 6 years ago - 2 comments

#73 - Run full workflow from command line

Issue - State: open - Opened by veitveit over 6 years ago - 2 comments

#72 - Ensure that Notebooks do not contain any cell output

Issue - State: closed - Opened by jgriss over 6 years ago - 1 comment
Labels: bug

#72 - Ensure that Notebooks do not contain any cell output

Issue - State: closed - Opened by jgriss over 6 years ago - 1 comment
Labels: bug

#71 - Add support for raw files

Issue - State: open - Opened by veitveit over 6 years ago - 3 comments
Labels: enhancement

#71 - Add support for raw files

Issue - State: open - Opened by veitveit over 6 years ago - 3 comments
Labels: enhancement

#70 - Loading previous data triggers error in R scripts

Issue - State: closed - Opened by veitveit over 6 years ago - 3 comments
Labels: bug, question, needs testing

#70 - Loading previous data triggers error in R scripts

Issue - State: closed - Opened by veitveit over 6 years ago - 3 comments
Labels: bug, question, needs testing

#69 - widgets not always visible

Issue - State: closed - Opened by veitveit over 6 years ago - 11 comments
Labels: bug, needs testing

#69 - widgets not always visible

Issue - State: closed - Opened by veitveit over 6 years ago - 11 comments
Labels: bug, needs testing

#68 - Releases should contain ready prepared zip files to download

Issue - State: closed - Opened by jgriss over 6 years ago - 2 comments
Labels: enhancement, wontfix

#68 - Releases should contain ready prepared zip files to download

Issue - State: closed - Opened by jgriss over 6 years ago - 2 comments
Labels: enhancement, wontfix

#67 - openBrowser.vbs needs to be shipped with run.bat

Issue - State: closed - Opened by jgriss over 6 years ago - 1 comment
Labels: bug

#67 - openBrowser.vbs needs to be shipped with run.bat

Issue - State: closed - Opened by jgriss over 6 years ago - 1 comment
Labels: bug

#66 - run.bat aborts on Windows 10 if file sharing does not work

Issue - State: closed - Opened by jgriss over 6 years ago - 1 comment
Labels: enhancement, wontfix

#66 - run.bat aborts on Windows 10 if file sharing does not work

Issue - State: closed - Opened by jgriss over 6 years ago - 1 comment
Labels: enhancement, wontfix

#65 - run.bat on Windows 10 does not recognize installed image

Issue - State: closed - Opened by jgriss over 6 years ago - 3 comments
Labels: bug

#65 - run.bat on Windows 10 does not recognize installed image

Issue - State: closed - Opened by jgriss over 6 years ago - 3 comments
Labels: bug

#64 - wrong estimation of free memory

Issue - State: closed - Opened by veitveit over 6 years ago - 4 comments
Labels: bug, help wanted

#64 - wrong estimation of free memory

Issue - State: closed - Opened by veitveit over 6 years ago - 4 comments
Labels: bug, help wanted

#63 - Define docker release process

Issue - State: closed - Opened by jgriss over 6 years ago - 4 comments
Labels: enhancement

#63 - Define docker release process

Issue - State: closed - Opened by jgriss over 6 years ago - 4 comments
Labels: enhancement

#62 - ERROR:root:File `'Scripts/methods_generator.ipy.py'` not found.

Issue - State: closed - Opened by veitveit over 6 years ago - 3 comments
Labels: bug

#62 - ERROR:root:File `'Scripts/methods_generator.ipy.py'` not found.

Issue - State: closed - Opened by veitveit over 6 years ago - 3 comments
Labels: bug

#61 - Clean source code

Issue - State: closed - Opened by veitveit over 6 years ago - 4 comments
Labels: enhancement

#61 - Clean source code

Issue - State: closed - Opened by veitveit over 6 years ago - 4 comments
Labels: enhancement

#60 - Treatment for variable modifications

Issue - State: closed - Opened by veitveit over 6 years ago - 1 comment
Labels: duplicate, enhancement

#60 - Treatment for variable modifications

Issue - State: closed - Opened by veitveit over 6 years ago - 1 comment
Labels: duplicate, enhancement

#59 - Wrong precursor tolerance range

Issue - State: closed - Opened by veitveit over 6 years ago
Labels: bug

#59 - Wrong precursor tolerance range

Issue - State: closed - Opened by veitveit over 6 years ago
Labels: bug

#58 - Save (search) output to log file

Issue - State: closed - Opened by jgriss over 6 years ago - 5 comments
Labels: enhancement

#58 - Save (search) output to log file

Issue - State: closed - Opened by jgriss over 6 years ago - 5 comments
Labels: enhancement

#57 - Error messages from search are not helpful

Issue - State: closed - Opened by jgriss over 6 years ago
Labels: bug

#57 - Error messages from search are not helpful

Issue - State: closed - Opened by jgriss over 6 years ago
Labels: bug

#56 - Package project in some way

Issue - State: closed - Opened by jgriss over 6 years ago - 5 comments
Labels: enhancement

#56 - Package project in some way

Issue - State: closed - Opened by jgriss over 6 years ago - 5 comments
Labels: enhancement

#55 - Warning HTML object may not be visible when displaying messages

Issue - State: closed - Opened by jgriss over 6 years ago - 1 comment
Labels: bug

#55 - Warning HTML object may not be visible when displaying messages

Issue - State: closed - Opened by jgriss over 6 years ago - 1 comment
Labels: bug

#54 - Hide "run_analysis" when loading previous results and the user changes the settings

Issue - State: closed - Opened by jgriss over 6 years ago - 1 comment
Labels: wontfix

#54 - Hide "run_analysis" when loading previous results and the user changes the settings

Issue - State: closed - Opened by jgriss over 6 years ago - 1 comment
Labels: wontfix

#53 - Changing spectra directory causes error when read permission is missing

Issue - State: closed - Opened by jgriss over 6 years ago
Labels: bug

#53 - Changing spectra directory causes error when read permission is missing

Issue - State: closed - Opened by jgriss over 6 years ago
Labels: bug

#52 - Change search output to use a dedicated HTML object

Issue - State: open - Opened by jgriss over 6 years ago - 2 comments
Labels: enhancement

#52 - Change search output to use a dedicated HTML object

Issue - State: open - Opened by jgriss over 6 years ago - 2 comments
Labels: enhancement

#51 - Test on Windows machine

Issue - State: closed - Opened by veitveit over 6 years ago - 6 comments
Labels: bug, needs testing

#51 - Test on Windows machine

Issue - State: closed - Opened by veitveit over 6 years ago - 6 comments
Labels: bug, needs testing

#50 - Avoid change to scrollling cell outputs or increase size

Issue - State: closed - Opened by veitveit over 6 years ago
Labels: enhancement

#50 - Avoid change to scrollling cell outputs or increase size

Issue - State: closed - Opened by veitveit over 6 years ago
Labels: enhancement

#49 - Mounting folders could fail due to different user IDs

Issue - State: closed - Opened by veitveit over 6 years ago - 1 comment
Labels: bug

#49 - Mounting folders could fail due to different user IDs

Issue - State: closed - Opened by veitveit over 6 years ago - 1 comment
Labels: bug

#48 - Save parameters in json file and load them in R again

Issue - State: closed - Opened by veitveit over 6 years ago - 3 comments
Labels: enhancement, help wanted

#48 - Save parameters in json file and load them in R again

Issue - State: closed - Opened by veitveit over 6 years ago - 3 comments
Labels: enhancement, help wanted

GitHub / protprotocols/isoprot issues and pull requests