Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / projectglow/glow issues and pull requests

#726 - Update sbt, scripted-plugin to 1.10.5

Pull Request - State: open - Opened by scala-steward-projectglow[bot] 9 days ago - 1 comment

#723 - Update sbt to 1.10.4

Pull Request - State: closed - Opened by scala-steward-projectglow[bot] 16 days ago - 1 comment

#722 - Update sbt to 1.10.3

Pull Request - State: closed - Opened by scala-steward-projectglow[bot] 23 days ago - 1 comment

#721 - Update sbt-scoverage to 2.2.2

Pull Request - State: closed - Opened by scala-steward-projectglow[bot] about 1 month ago - 1 comment

#720 - Update hadoop-client to 3.4.1

Pull Request - State: open - Opened by scala-steward-projectglow[bot] about 1 month ago

#719 - Update development version to 2.0.4

Pull Request - State: closed - Opened by github-actions[bot] about 1 month ago - 1 comment

#718 - Update development version to 2.0.4

Pull Request - State: closed - Opened by github-actions[bot] about 1 month ago - 1 comment

#717 - Update sbt-sonatype to 3.12.2

Pull Request - State: closed - Opened by scala-steward-projectglow[bot] about 1 month ago - 1 comment

#716 - Update htsjdk to 4.1.3

Pull Request - State: open - Opened by scala-steward-projectglow[bot] about 1 month ago

#715 - Update picard to 3.3.0

Pull Request - State: closed - Opened by scala-steward-projectglow[bot] about 1 month ago

#714 - Update sbt-assembly to 2.3.0

Pull Request - State: closed - Opened by scala-steward-projectglow[bot] about 1 month ago - 1 comment

#713 - fix build script

Pull Request - State: open - Opened by kermany about 1 month ago

#711 - Update sbt-pgp to 2.3.0

Pull Request - State: closed - Opened by scala-steward-projectglow[bot] about 1 month ago - 1 comment

#710 - updating einsum contract for compatibility

Pull Request - State: closed - Opened by kermany about 2 months ago - 1 comment

#709 - Update sbt-scoverage to 2.2.1

Pull Request - State: closed - Opened by scala-steward-projectglow[bot] about 2 months ago - 1 comment

#708 - Update sbt to 1.10.2

Pull Request - State: closed - Opened by scala-steward-projectglow[bot] about 2 months ago - 1 comment

#707 - Update spark-catalyst, spark-core, ... to 3.5.3

Pull Request - State: closed - Opened by scala-steward-projectglow[bot] about 2 months ago

#706 - Update htsjdk to 4.1.2

Pull Request - State: closed - Opened by scala-steward-projectglow[bot] about 2 months ago - 1 comment

#705 - fixing scala logistic regression test

Pull Request - State: closed - Opened by kermany 2 months ago - 1 comment

#704 - Update sbt-scoverage to 2.2.0

Pull Request - State: closed - Opened by scala-steward-projectglow[bot] 2 months ago - 1 comment

#703 - Update netty-all, netty-handler, ... to 4.1.113.Final

Pull Request - State: closed - Opened by scala-steward-projectglow[bot] 2 months ago - 1 comment

#702 - Update development version to 2.03

Pull Request - State: closed - Opened by github-actions[bot] 2 months ago

#701 - Address scala 2_12.15 deprecation, advance to scala 2_12.19

Pull Request - State: closed - Opened by a0x8o 2 months ago - 1 comment

#700 - Scalac SCoverage Plugin Requires 2.1.1, but latest release on Maven is 2.0.11

Issue - State: closed - Opened by willsmithDB 3 months ago
Labels: dependencies

#699 - Update snakeyaml to 2.3

Pull Request - State: closed - Opened by scala-steward-projectglow[bot] 3 months ago

#698 - Update commons-lang3 to 3.17.0

Pull Request - State: closed - Opened by scala-steward-projectglow[bot] 3 months ago

#697 - BigBgen Conversion Produces Empty Probabilities Field

Issue - State: closed - Opened by ShakutaiGit 3 months ago - 1 comment

#696 - Update sbt-sonatype to 3.11.3

Pull Request - State: closed - Opened by scala-steward-projectglow[bot] 3 months ago - 1 comment

#695 - Update sqlite-jdbc to 3.46.1.0

Pull Request - State: closed - Opened by scala-steward-projectglow[bot] 3 months ago

#694 - Update sbt-scoverage to 2.1.1

Pull Request - State: closed - Opened by scala-steward-projectglow[bot] 3 months ago - 1 comment

#693 - Writing sharded VCF fails on read

Issue - State: open - Opened by tamirkamara 3 months ago

#692 - Update sbt-sonatype to 3.11.2

Pull Request - State: closed - Opened by scala-steward-projectglow[bot] 3 months ago - 1 comment

#691 - Update slf4j-api to 2.0.16

Pull Request - State: closed - Opened by scala-steward-projectglow[bot] 3 months ago - 1 comment

#690 - Update spark-catalyst, spark-core, ... to 3.5.2

Pull Request - State: closed - Opened by scala-steward-projectglow[bot] 3 months ago - 1 comment

#689 - Update commons-lang3 to 3.16.0

Pull Request - State: closed - Opened by scala-steward-projectglow[bot] 3 months ago - 1 comment

#688 - Update sqlite-jdbc to 3.46.0.1

Pull Request - State: closed - Opened by scala-steward-projectglow[bot] 4 months ago - 1 comment

#687 - Update sbt-sonatype to 3.11.1

Pull Request - State: closed - Opened by scala-steward-projectglow[bot] 4 months ago - 1 comment

#686 - Update scalafmt-core to 3.8.3

Pull Request - State: closed - Opened by scala-steward-projectglow[bot] 4 months ago

#685 - Tried spark.sql("RESET") not worked

Issue - State: open - Opened by Kumaranhadoop 4 months ago

#684 - Update commons-lang3 to 3.15.0

Pull Request - State: closed - Opened by scala-steward-projectglow[bot] 4 months ago - 1 comment

#683 - Update netty-all, netty-handler, ... to 4.1.112.Final

Pull Request - State: closed - Opened by scala-steward-projectglow[bot] 4 months ago - 1 comment

#682 - Update sbt to 1.10.1

Pull Request - State: closed - Opened by scala-steward-projectglow[bot] 4 months ago - 2 comments

#681 - Numpy == 2.0 fails with glow python package v2.0

Issue - State: closed - Opened by Hoeze 4 months ago

#680 - Update sbt-scoverage to 2.1.0

Pull Request - State: closed - Opened by scala-steward-projectglow[bot] 5 months ago - 1 comment

#679 - Update sbt-sonatype to 3.11.0

Pull Request - State: closed - Opened by scala-steward-projectglow[bot] 5 months ago - 1 comment

#678 - Update scalatest to 3.2.19

Pull Request - State: closed - Opened by scala-steward-projectglow[bot] 5 months ago

#677 - Update picard to 3.2.0

Pull Request - State: closed - Opened by scala-steward-projectglow[bot] 5 months ago

#676 - Fix docs and Scala versions

Pull Request - State: closed - Opened by a0x8o 5 months ago

#675 - Rename noteook-tests.yml to notebook-tests.yml

Pull Request - State: closed - Opened by a0x8o 5 months ago

#674 - Feature/2.12.19

Pull Request - State: closed - Opened by a0x8o 5 months ago

#673 - Update/scoverage 2.0.19

Pull Request - State: closed - Opened by a0x8o 5 months ago

#672 - Update development version to 2.0.2

Pull Request - State: closed - Opened by github-actions[bot] 5 months ago

#671 - Update scalafmt-core to 3.8.2

Pull Request - State: closed - Opened by scala-steward-projectglow[bot] 5 months ago - 1 comment

#670 - Update netty-all, netty-handler, ... to 4.1.111.Final

Pull Request - State: closed - Opened by scala-steward-projectglow[bot] 5 months ago - 1 comment

#669 - Update htsjdk to 4.1.1

Pull Request - State: closed - Opened by scala-steward-projectglow[bot] 5 months ago - 1 comment

#668 - Update sqlite-jdbc to 3.46.0.0

Pull Request - State: closed - Opened by scala-steward-projectglow[bot] 6 months ago - 2 comments

#667 - Update netty-all, netty-handler, ... to 4.1.110.Final

Pull Request - State: closed - Opened by scala-steward-projectglow[bot] 6 months ago - 1 comment

#666 - Glow.hail - No module found

Issue - State: closed - Opened by davipug 6 months ago - 2 comments

#665 - Update sbt to 1.10.0

Pull Request - State: closed - Opened by scala-steward-projectglow[bot] 6 months ago - 2 comments

#664 - Update sbt-scoverage to 2.0.12

Pull Request - State: closed - Opened by scala-steward-projectglow[bot] 7 months ago

#662 - Update sqlite-jdbc to 3.45.3.0

Pull Request - State: closed - Opened by scala-steward-projectglow[bot] 7 months ago - 1 comment

#660 - Setting upper threshold on pandas <2.0.0

Pull Request - State: closed - Opened by zyd14 7 months ago - 4 comments

#659 - Pandas should be pinned <2.0.0

Issue - State: closed - Opened by zyd14 7 months ago - 1 comment

#658 - Clean up unnecessary tmp files

Pull Request - State: closed - Opened by a0x8o 7 months ago

#657 - Update slf4j-api to 2.0.13

Pull Request - State: closed - Opened by scala-steward-projectglow[bot] 7 months ago - 1 comment

#656 - Function to get quantiles of array

Pull Request - State: closed - Opened by henrydavidge 7 months ago - 1 comment

#655 - Make variant splitter work with Photon

Pull Request - State: closed - Opened by henrydavidge 8 months ago - 1 comment

#654 - Improve INFO field splitting logic; make variant splitting plan more …

Pull Request - State: closed - Opened by henrydavidge 8 months ago - 1 comment

#653 - Update scalafmt-core to 3.8.1

Pull Request - State: closed - Opened by scala-steward-projectglow[bot] 8 months ago

#652 - Update hadoop-client to 3.4.0

Pull Request - State: closed - Opened by scala-steward-projectglow[bot] 8 months ago - 1 comment

#650 - Add option to manually specify sample ids

Pull Request - State: closed - Opened by henrydavidge 8 months ago - 1 comment

#545 - Comparision of performance of regenie WGR and glow WGR

Issue - State: closed - Opened by hguturu 10 months ago - 2 comments

#540 - Feature Request: add regenie's gene-based testing

Issue - State: open - Opened by jjfarrell 11 months ago
Labels: enhancement

#537 - Unexpected behaviour when using the SplitMultiallelics Transformer with unbounded INFO fields

Issue - State: closed - Opened by simojoe about 1 year ago - 2 comments
Labels: bug

#533 - Cannot install+use the python glow package any more

Issue - State: open - Opened by Hoeze over 1 year ago - 1 comment

#532 - Feature spark331 update

Pull Request - State: open - Opened by zavoraad over 1 year ago - 6 comments

#531 - Spark version upgrade 3.4, 3.3

Issue - State: open - Opened by jisqaqov over 1 year ago - 3 comments

#530 - Interaction Tests with GLOW

Issue - State: open - Opened by jjfarrell over 1 year ago - 1 comment
Labels: enhancement

#529 - pipe transformer support for file input/output for command line apps

Issue - State: open - Opened by MikePone over 1 year ago - 2 comments

#528 - AnalysisException: Column 'num_workers' does not exist.

Issue - State: open - Opened by mwarqee over 1 year ago - 1 comment

#527 - Logistic regression ValueError: Null fit failed!

Issue - State: closed - Opened by ConnorBarnhill over 1 year ago - 2 comments
Labels: duplicate

#526 - Python tests fail with KeyError: '_glow_regression_values'

Issue - State: open - Opened by a0x8o almost 2 years ago

#525 - Cannot write INFO fields with LongType to VCF

Issue - State: open - Opened by Hoeze almost 2 years ago - 1 comment

#524 - Minimal attempt to support Spark 3.3 by adding shims for CSVOptions methods

Pull Request - State: closed - Opened by srowen almost 2 years ago - 3 comments

#523 - spark.read.format("vcf").load() fails for vcf.bgz files

Issue - State: closed - Opened by jakub-auger almost 2 years ago - 3 comments

#522 - Update documentation for GFF schema for Alias field

Pull Request - State: closed - Opened by a-li almost 2 years ago

#521 - Load glow mave package from Python

Issue - State: closed - Opened by dridk about 2 years ago - 5 comments

#520 - PySpark 3.3 support

Issue - State: open - Opened by Hoeze about 2 years ago - 7 comments

#519 - Fix Infinity/NaN parsing to allow full set of values from VCF specification

Pull Request - State: closed - Opened by dtzeng about 2 years ago - 4 comments

#518 - Halt Hail tests

Pull Request - State: closed - Opened by a0x8o about 2 years ago - 2 comments

#517 - VCF Infinity/NaN values are not handled according to VCF spec

Issue - State: closed - Opened by dtzeng about 2 years ago

#516 - Documentation fixes for DBFS API

Pull Request - State: closed - Opened by a0x8o about 2 years ago - 2 comments

#515 - Ask: add glow to chocolatey

Issue - State: closed - Opened by FallenGameR about 2 years ago - 4 comments

#514 - Docker updates

Pull Request - State: closed - Opened by williambrandler over 2 years ago