Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / projectglow/glow issues and pull requests

#533 - Cannot install+use the python glow package any more

Issue - State: open - Opened by Hoeze about 1 year ago - 1 comment

#532 - Feature spark331 update

Pull Request - State: open - Opened by zavoraad about 1 year ago - 6 comments

#531 - Spark version upgrade 3.4, 3.3

Issue - State: open - Opened by jisqaqov about 1 year ago - 3 comments

#530 - Interaction Tests with GLOW

Issue - State: open - Opened by jjfarrell over 1 year ago - 1 comment

#529 - pipe transformer support for file input/output for command line apps

Issue - State: open - Opened by MikePone over 1 year ago - 2 comments

#528 - AnalysisException: Column 'num_workers' does not exist.

Issue - State: open - Opened by mwarqee over 1 year ago - 1 comment

#527 - Logistic regression ValueError: Null fit failed!

Issue - State: open - Opened by ConnorBarnhill over 1 year ago - 1 comment

#526 - Python tests fail with KeyError: '_glow_regression_values'

Issue - State: open - Opened by a0x8o over 1 year ago

#525 - Cannot write INFO fields with LongType to VCF

Issue - State: open - Opened by Hoeze over 1 year ago - 1 comment

#524 - Minimal attempt to support Spark 3.3 by adding shims for CSVOptions methods

Pull Request - State: closed - Opened by srowen over 1 year ago - 3 comments

#523 - spark.read.format("vcf").load() fails for vcf.bgz files

Issue - State: closed - Opened by jakub-auger over 1 year ago - 3 comments

#522 - Update documentation for GFF schema for Alias field

Pull Request - State: closed - Opened by a-li almost 2 years ago

#521 - Load glow mave package from Python

Issue - State: closed - Opened by dridk almost 2 years ago - 5 comments

#520 - PySpark 3.3 support

Issue - State: open - Opened by Hoeze about 2 years ago - 7 comments

#519 - Fix Infinity/NaN parsing to allow full set of values from VCF specification

Pull Request - State: closed - Opened by dtzeng about 2 years ago - 4 comments

#518 - Halt Hail tests

Pull Request - State: closed - Opened by a0x8o about 2 years ago - 2 comments

#517 - VCF Infinity/NaN values are not handled according to VCF spec

Issue - State: closed - Opened by dtzeng about 2 years ago

#516 - Documentation fixes for DBFS API

Pull Request - State: closed - Opened by a0x8o about 2 years ago - 2 comments

#515 - Ask: add glow to chocolatey

Issue - State: closed - Opened by FallenGameR about 2 years ago - 4 comments

#514 - Docker updates

Pull Request - State: closed - Opened by williambrandler about 2 years ago

#513 - Test recalibration + DBR 9.1 Docker images

Pull Request - State: closed - Opened by a0x8o over 2 years ago - 4 comments

#512 - Docker build.sh script is not current in tagged release

Issue - State: closed - Opened by jebbd over 2 years ago - 1 comment

#510 - move databricks docs to glow docs

Pull Request - State: closed - Opened by williambrandler over 2 years ago - 1 comment

#509 - Release of Glow v1.2.1

Pull Request - State: closed - Opened by williambrandler over 2 years ago

#507 - Release with spark3.2 support

Issue - State: closed - Opened by bogdang989 over 2 years ago - 1 comment

#506 - Revert "upgrade spark version from 3.1 to 3.2, with shim"

Pull Request - State: closed - Opened by williambrandler over 2 years ago

#505 - Optimize CircleCI Config

Pull Request - State: closed - Opened by dvcastillo over 2 years ago - 3 comments

#504 - fix broken liftOver notebook link in docs

Pull Request - State: closed - Opened by williambrandler over 2 years ago - 1 comment

#503 - Oss docker

Pull Request - State: closed - Opened by williambrandler over 2 years ago - 2 comments

#502 - add docker architecture to readme

Pull Request - State: closed - Opened by williambrandler over 2 years ago - 1 comment

#501 - upgrade spark version from 3.1 to 3.2, with shim

Pull Request - State: closed - Opened by jkbradley over 2 years ago - 3 comments

#500 - add plink example to docs

Pull Request - State: closed - Opened by williambrandler over 2 years ago - 1 comment

#499 - upgrade spark dependency from 3.1 to 3.2

Pull Request - State: closed - Opened by williambrandler over 2 years ago - 1 comment

#498 - update legacy convenience image

Pull Request - State: closed - Opened by williambrandler over 2 years ago - 1 comment

#497 - bump log4j version

Pull Request - State: closed - Opened by williambrandler over 2 years ago

#496 - Track dockerhub

Pull Request - State: closed - Opened by williambrandler over 2 years ago - 1 comment

#495 - update liftOver notebook and add to integration test

Pull Request - State: closed - Opened by williambrandler over 2 years ago - 1 comment

#494 - Installing and running glow outside of databricks

Issue - State: open - Opened by edg1983 over 2 years ago - 10 comments

#493 - update notebooks for new multitask continuous integration

Pull Request - State: closed - Opened by williambrandler over 2 years ago

#492 - docker container update

Pull Request - State: closed - Opened by williambrandler over 2 years ago - 1 comment

#491 - Glow integration test with multitask jobs and git repos integration

Pull Request - State: closed - Opened by williambrandler over 2 years ago - 1 comment

#490 - Supply params to pipe transformer as json - docs example

Pull Request - State: closed - Opened by williambrandler over 2 years ago - 1 comment

#489 - Add ganglia image / layer deployment to Glow docker

Pull Request - State: closed - Opened by a0x8o over 2 years ago - 1 comment

#488 - Fix for Databricks ES-257648

Pull Request - State: closed - Opened by a0x8o over 2 years ago - 1 comment

#487 - Fix for ES-257648; Ganglia deployment Docker image / layer

Pull Request - State: closed - Opened by a0x8o over 2 years ago - 3 comments

#486 - Ganglia

Pull Request - State: closed - Opened by a0x8o over 2 years ago

#485 - Explain regenie's domain of applicability

Pull Request - State: closed - Opened by williambrandler over 2 years ago - 1 comment

#484 - Enable ganglia on DCS & resolve Databricks ES-257648

Pull Request - State: closed - Opened by a0x8o over 2 years ago

#483 - define output_delta in 0_setup_constants_glow.py

Pull Request - State: closed - Opened by cameronraysmith over 2 years ago - 4 comments

#482 - Sim1000G installation patch

Pull Request - State: closed - Opened by williambrandler over 2 years ago - 1 comment

#481 - upgrade spark version from 3.1 to 3.2

Pull Request - State: closed - Opened by JassAbidi over 2 years ago - 9 comments

#480 - Improve handling of environment variables in the pipe transformer

Issue - State: closed - Opened by Hoeze over 2 years ago - 5 comments

#479 - VEP exone/intron annotations failure

Issue - State: closed - Opened by PROJECT-DEFIANT over 2 years ago - 5 comments

#478 - configure sparkSession with glow

Issue - State: closed - Opened by PROJECT-DEFIANT over 2 years ago - 2 comments

#477 - Notebook continuous integration 01/24/22: simplify genotype simulation notebooks

Pull Request - State: closed - Opened by williambrandler over 2 years ago - 1 comment

#476 - fix broken links

Pull Request - State: closed - Opened by williambrandler over 2 years ago - 1 comment

#475 - Support whitespaces for variant datasources

Pull Request - State: closed - Opened by williambrandler over 2 years ago - 1 comment

#474 - VCF files with spaces in the file name cannot be read

Issue - State: open - Opened by arunbhat over 2 years ago - 3 comments

#473 - Improve docs: Document usage of schema when reading/writing VCF

Issue - State: open - Opened by Hoeze over 2 years ago - 2 comments

#472 - Simplify writing of sharded VCFs

Issue - State: open - Opened by Hoeze over 2 years ago - 3 comments

#471 - Minor inconsistencies in score-logistic p-values

Issue - State: open - Opened by alev000 over 2 years ago - 4 comments

#470 - notebook continous integration, Jan 06 2022 update

Pull Request - State: closed - Opened by williambrandler over 2 years ago - 1 comment

#469 - Iss463 quarantine full ds

Pull Request - State: closed - Opened by mah-databricks almost 3 years ago - 2 comments

#468 - Variant delta lake

Pull Request - State: closed - Opened by williambrandler almost 3 years ago - 1 comment

#467 - update hadoop version

Pull Request - State: closed - Opened by williambrandler almost 3 years ago - 1 comment

#466 - reorder dockerfile

Pull Request - State: closed - Opened by williambrandler almost 3 years ago - 1 comment

#465 - Hadoop 3 compatibility

Issue - State: closed - Opened by skhalid7 almost 3 years ago - 9 comments

#464 - v1.1.2 release

Pull Request - State: closed - Opened by williambrandler almost 3 years ago - 1 comment

#463 - quarantine functionality in pipe transformer writes out full dataset

Issue - State: open - Opened by williambrandler almost 3 years ago - 5 comments

#462 - v1.1.2 release

Pull Request - State: closed - Opened by williambrandler almost 3 years ago - 1 comment

#461 - update pipe transformer docs to include quarantine

Pull Request - State: closed - Opened by williambrandler almost 3 years ago - 1 comment

#460 - Upgrade Spark dependency from 3.1.2 to 3.2.0

Pull Request - State: closed - Opened by williambrandler almost 3 years ago

#459 - Set explicit guidelines when running large jobs

Issue - State: open - Opened by williambrandler almost 3 years ago

#458 - Plink demo

Issue - State: open - Opened by dberma15 almost 3 years ago - 4 comments

#457 - add bgenix tool to dockerfile

Pull Request - State: closed - Opened by williambrandler almost 3 years ago - 1 comment

#456 - Databricks TypeError: 'JavaPackage' object is not callable

Issue - State: open - Opened by helenxl almost 3 years ago - 11 comments

#455 - update quality control continuous integration notebooks

Pull Request - State: closed - Opened by williambrandler almost 3 years ago - 1 comment

#454 - Upgrade Spark dependency from 3.1.2 to 3.2.0

Pull Request - State: closed - Opened by williambrandler almost 3 years ago

#453 - Performance of split and normalize transformers

Issue - State: open - Opened by Hoeze almost 3 years ago - 6 comments

#452 - update docker container to run on ubuntu 20.04

Pull Request - State: closed - Opened by williambrandler almost 3 years ago - 1 comment

#451 - Glow implementation using Scala

Issue - State: open - Opened by veeteehimself almost 3 years ago - 1 comment

#450 - notebook continuous integration 11/18

Pull Request - State: closed - Opened by williambrandler almost 3 years ago - 1 comment

#449 - Finalize benchmarks for upcoming blog post

Pull Request - State: closed - Opened by williambrandler almost 3 years ago - 1 comment

#448 - Fix notebook paths

Pull Request - State: closed - Opened by williambrandler almost 3 years ago - 1 comment

#446 - add new benchmarking notebooks

Pull Request - State: closed - Opened by williambrandler almost 3 years ago - 1 comment

#445 - Update simulations

Pull Request - State: closed - Opened by williambrandler almost 3 years ago - 1 comment

#444 - add ingest notebook for benchmarks

Pull Request - State: closed - Opened by williambrandler almost 3 years ago - 1 comment

#443 - add comparison of gwas results for hail and glow

Pull Request - State: closed - Opened by williambrandler almost 3 years ago - 1 comment

#442 - fix links

Pull Request - State: closed - Opened by williambrandler almost 3 years ago - 1 comment

#441 - How GLOW exports BGEN phased probability data to VCF

Issue - State: closed - Opened by aoblebea almost 3 years ago - 4 comments

#440 - benchmarks integration test notebooks

Pull Request - State: closed - Opened by williambrandler almost 3 years ago - 2 comments

#438 - bump hail version

Pull Request - State: closed - Opened by williambrandler almost 3 years ago - 1 comment

#433 - Contributing guide

Pull Request - State: closed - Opened by williambrandler almost 3 years ago - 1 comment

#431 - Quickstart

Pull Request - State: closed - Opened by williambrandler almost 3 years ago - 1 comment

#425 - Sample Quality Control notebook broken

Issue - State: closed - Opened by dberma15 almost 3 years ago - 4 comments

#423 - PySpark 3.2.0 support

Issue - State: open - Opened by Hoeze almost 3 years ago - 12 comments