Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / project-gen3sis/R-package issues and pull requests

#70 - Some `phy.nex` files have negative branch lengths

Issue - State: open - Opened by mmore500 6 months ago - 3 comments

#69 - Several vignettes are broken

Issue - State: closed - Opened by mmore500 10 months ago - 2 comments

#68 - Fix typo in design_landscape vignette

Pull Request - State: closed - Opened by mmore500 10 months ago - 3 comments

#67 - Development

Pull Request - State: closed - Opened by ohagen 10 months ago

#66 - Unicode Greek letters and symbols in plots

Issue - State: closed - Opened by ohagen 11 months ago

#65 - Rectify nexus phylogeny syntax

Pull Request - State: closed - Opened by mmore500 11 months ago - 1 comment

#64 - print step info before calling oberver

Issue - State: closed - Opened by benj919 12 months ago
Labels: bug

#63 - accounting problem for speciation followed by extinction

Issue - State: closed - Opened by wibach almost 2 years ago - 6 comments
Labels: bug

#62 - Check package for dependencies expiring soon.

Issue - State: open - Opened by ohagen almost 2 years ago - 3 comments

#61 - NEWS version history

Issue - State: closed - Opened by ohagen over 2 years ago - 1 comment
Labels: documentation

#60 - potential improvement of distance matrix calculation

Issue - State: open - Opened by ohagen over 2 years ago - 3 comments
Labels: enhancement

#59 - add new check functions?

Issue - State: closed - Opened by ohagen over 2 years ago - 1 comment
Labels: enhancement

#58 - Speedup loop_ecology that was too slow for the evol simulation

Pull Request - State: closed - Opened by ZHG2017 over 2 years ago - 27 comments

#57 - CRAN Fixes gen3sis 1.4

Issue - State: closed - Opened by ohagen almost 3 years ago - 1 comment

#56 - add colaborations file to git

Issue - State: open - Opened by ohagen almost 3 years ago

#55 - Fix #54: add > before the closing fence to match the opening fence

Pull Request - State: closed - Opened by yihui almost 3 years ago - 4 comments

#54 - vignette problems in CRAN Should be corrected by 2021-10-19 to safely retain gen3sis on CRAN.

Issue - State: closed - Opened by ohagen almost 3 years ago - 1 comment
Labels: bug

#53 - build package NOTE

Issue - State: closed - Opened by ohagen about 3 years ago

#52 - Development

Pull Request - State: closed - Opened by ohagen about 3 years ago

#51 - Add GitHub Actions CI

Pull Request - State: closed - Opened by richelbilderbeek over 3 years ago - 7 comments

#50 - South America distances missing

Issue - State: closed - Opened by ohagen over 3 years ago - 4 comments

#49 - implement CI

Issue - State: open - Opened by ohagen over 3 years ago - 16 comments

#48 - call loop_ecology() during loop updates

Pull Request - State: closed - Opened by cakloecker over 3 years ago

#47 - misplaced loop_ecology() call

Issue - State: closed - Opened by cakloecker over 3 years ago - 1 comment
Labels: bug

#46 - Color palett of the ouput for color-blind people

Issue - State: closed - Opened by Bantau over 3 years ago - 2 comments
Labels: enhancement

#45 - versions history

Issue - State: closed - Opened by ohagen over 3 years ago - 1 comment
Labels: enhancement

#44 - introduction vignette, richness plot

Issue - State: open - Opened by benj919 over 3 years ago
Labels: documentation

#43 - multiple richenss plot with tag -1 when simulation starts with multiple species

Issue - State: closed - Opened by ohagen almost 4 years ago
Labels: bug

#41 - specificy alternatives on plot_summary documentaiton regarding the sgen3sis.rds

Issue - State: open - Opened by ohagen about 4 years ago
Labels: enhancement

#40 - axis label for time series in summary plot is wrong

Issue - State: closed - Opened by benj919 about 4 years ago
Labels: bug

#39 - plot_summary fails if simulation ends before reaching step 0

Issue - State: closed - Opened by benj919 about 4 years ago
Labels: bug

#38 - plot_summary compatible with plot_richness

Issue - State: closed - Opened by ohagen about 4 years ago - 1 comment
Labels: enhancement

#37 - plot_richness

Issue - State: closed - Opened by alexskeels about 4 years ago

#36 - compile input landscape from dataframs or rds as well, not only from rasters

Issue - State: open - Opened by ohagen about 4 years ago
Labels: enhancement

#35 - relaunch simulations from val intermediate objects

Issue - State: open - Opened by ohagen about 4 years ago - 2 comments
Labels: bug

#34 - add to imports

Issue - State: closed - Opened by ohagen over 4 years ago - 1 comment
Labels: bug

#33 - plot_richness on vignet not workin after save functionality added

Issue - State: closed - Opened by ohagen over 4 years ago - 1 comment
Labels: bug

#32 - calling of plots from observer not working

Issue - State: closed - Opened by ohagen over 4 years ago
Labels: bug

#31 - Fabian vigenette

Pull Request - State: closed - Opened by FFopp over 4 years ago

#30 - Setting to save plots to file?

Issue - State: closed - Opened by benj919 over 4 years ago - 1 comment

#28 - Juliano

Pull Request - State: closed - Opened by julianoscabral over 4 years ago - 1 comment

#27 - distance matrix test fails now

Issue - State: closed - Opened by ohagen over 4 years ago - 1 comment
Labels: bug, help wanted

#26 - config_handling.R line:122 requires a value!

Issue - State: closed - Opened by ohagen over 4 years ago - 1 comment

#25 - Build error due to create_input.Rmd

Issue - State: closed - Opened by florianhartig over 4 years ago - 1 comment

#24 - landscapes argument of the create_input()

Issue - State: closed - Opened by julianoscabral over 4 years ago - 6 comments

#23 - add travis win build

Issue - State: closed - Opened by ohagen over 4 years ago - 7 comments

#22 - Update README.md

Pull Request - State: closed - Opened by florianhartig over 4 years ago

#21 - Bugfixes / tests florian

Pull Request - State: closed - Opened by florianhartig over 4 years ago

#20 - Example files

Issue - State: closed - Opened by florianhartig over 4 years ago - 1 comment

#19 - Missing help file

Issue - State: closed - Opened by florianhartig over 4 years ago - 2 comments

#18 - create_input scaling bug/problem

Issue - State: closed - Opened by benj919 over 4 years ago - 20 comments
Labels: bug

#17 - add species ids as names in saving functions (besides save_species)

Issue - State: closed - Opened by benj919 over 4 years ago - 2 comments

#16 - add option for saving plots to files at the plot folder

Issue - State: closed - Opened by ohagen over 4 years ago

#15 - rename get_geo_richness to get_richness or calculate_richness?

Issue - State: closed - Opened by benj919 over 4 years ago

#14 - Check main page

Issue - State: closed - Opened by florianhartig over 4 years ago

#13 - Vignettes cleanup

Issue - State: closed - Opened by florianhartig over 4 years ago

#12 - precompute partial distance matrices

Issue - State: open - Opened by benj919 over 4 years ago - 3 comments
Labels: enhancement

#11 - Habitability mask during Input creation

Issue - State: closed - Opened by benj919 over 4 years ago - 2 comments
Labels: bug, enhancement

#10 - path magic feature and bug

Issue - State: open - Opened by benj919 over 4 years ago - 1 comment
Labels: enhancement

#9 - Automatic tests / continuous integration

Issue - State: closed - Opened by florianhartig over 4 years ago - 7 comments

#8 - use only one config parameter not config file and config object

Issue - State: closed - Opened by ohagen over 4 years ago - 1 comment

#7 - Example files for help

Issue - State: closed - Opened by florianhartig over 4 years ago - 6 comments

#6 - CRAN complain for non-standard things in the check directory ... NOTE

Issue - State: closed - Opened by ohagen over 4 years ago - 15 comments
Labels: bug

#5 - Modify write_phylogeny so that nex object is correct toughout the simulation run

Issue - State: closed - Opened by ohagen over 4 years ago - 1 comment
Labels: enhancement, Low priority

#4 - Why so many vignettes?

Issue - State: closed - Opened by florianhartig over 4 years ago - 4 comments

#3 - add rds data (non-RData, csv or txt) to data or vignette

Issue - State: closed - Opened by ohagen over 4 years ago - 8 comments
Labels: documentation, good first issue

#2 - export and document get_geo_richness

Issue - State: closed - Opened by ohagen over 4 years ago - 1 comment
Labels: enhancement, good first issue

#1 - plot_landscape function crash

Issue - State: closed - Opened by ohagen over 4 years ago
Labels: bug