powellgenomicslab/Nebulosa issues and pull requests

#30 - Missing dependency on parallelly

Issue - State: open - Opened by mmokrejs 2 months ago

#29 - plot_density error: empty raster

Issue - State: open - Opened by daddabi 6 months ago - 1 comment

#28 - Problems trying to generate a kernel density plot with more than 2 genes

Issue - State: open - Opened by evaesquinas 7 months ago

#27 - Can you make it compatible to ggplot2v3.5?

Issue - State: open - Opened by PrashINRA 8 months ago - 3 comments

#26 - Plot density issue for >1 gene and the projection output

Issue - State: open - Opened by ganpha 8 months ago

#25 - cannot coerce type 'environment' to vector of type 'character'

Issue - State: open - Opened by Noralii 8 months ago - 1 comment

#24 - Plot density issue

Issue - State: open - Opened by apal6 10 months ago - 2 comments

#23 - Update plotting.R

Pull Request - State: closed - Opened by beigelk 11 months ago

#22 - plot_density not working

Issue - State: open - Opened by ftencaten 11 months ago - 15 comments

#21 - Prepare for upcoming Seurat v5 release

Issue - State: open - Opened by saketkc over 1 year ago

#20 - Make function density_plot to work smoothly with genes that have only zero read counts

Issue - State: open - Opened by aghr about 2 years ago

#19 - Nebulosa with metadata

Issue - State: open - Opened by cgraham13 about 2 years ago

#18 - Can Nebulosa be used from seurat object normalized via NormalizeData() instead of SCTransform()?

Issue - State: open - Opened by levinhein over 2 years ago - 1 comment
Labels: enhancement

#17 - Why does the highest expression plotted with most negative density? Disagreement between FeaturePlot vs plot_density

Issue - State: open - Opened by denvercal1234GitHub almost 3 years ago - 7 comments

#16 - plot_density can't work

Issue - State: open - Opened by lavon79 almost 3 years ago

#15 - Add additional viridis pal support

Pull Request - State: open - Opened by samuel-marsh over 3 years ago

#14 - Nebulosa with Module Scores?

Issue - State: open - Opened by michaelcvermeulen over 3 years ago

#13 - Nebulosa for multimodal data

Issue - State: open - Opened by ghost over 3 years ago

#12 - A few of advices for this package

Issue - State: open - Opened by honghh2018 over 3 years ago - 1 comment

#11 - How to get the feature data matrix from plot_density plots

Issue - State: open - Opened by Xiangruili-seed almost 4 years ago

#10 - Replace Seurat imports with SeuratObject

Pull Request - State: closed - Opened by mojaveazure almost 4 years ago - 1 comment

#9 - spatstat exports issue

Issue - State: open - Opened by ttriche almost 4 years ago - 3 comments

#8 - Python implementation

Issue - State: open - Opened by Hrovatin almost 4 years ago

#7 - What is the optimal threshold value of joint density?

Issue - State: open - Opened by yuGithuuub about 4 years ago - 3 comments

#6 - Refer to the correct function from ks package

Pull Request - State: closed - Opened by gokceneraslan about 4 years ago - 1 comment

#5 - Introduce split.by?

Issue - State: open - Opened by kmshort about 4 years ago - 1 comment

#4 - Layering Nebulosa Visualization with Clustering Results

Issue - State: open - Opened by mhwadsworth91 about 4 years ago

#3 - Does Nebulosa support the visualization of CITE-seq data?

Issue - State: closed - Opened by lxhuang7 over 4 years ago - 2 comments
Labels: question

#2 - Install Nebulosa on R 3.6.3

Issue - State: closed - Opened by MelissaSaichi over 4 years ago - 1 comment

#1 - Use Seurat accessors instead of slot

Pull Request - State: closed - Opened by mojaveazure over 4 years ago

Ecosyste.ms: Issues

GitHub / powellgenomicslab/Nebulosa issues and pull requests