Ecosyste.ms: Issues

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GitHub / populse/mia_processes issues and pull requests

#85 - CVR pipeline issue with iteration

Issue - State: open - Opened by manuegrx 3 months ago - 8 comments

#84 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 4 months ago

#83 - [bug] report - True Type font version issue on Mac

Issue - State: closed - Opened by manuegrx 4 months ago - 2 comments

#82 - add GE2REC

Pull Request - State: closed - Opened by manuegrx 5 months ago

#81 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 5 months ago

#80 - [pipeline in progress] Perfusion DSC pipeline

Issue - State: open - Opened by servoz 6 months ago

#79 - Final validation of the CVR report

Issue - State: closed - Opened by servoz 7 months ago - 1 comment

#78 - [pipeline in progress] Create a pipeline for GE2REC project

Issue - State: open - Opened by manuegrx 7 months ago - 1 comment

#77 - Update level1design

Pull Request - State: closed - Opened by manuegrx 7 months ago

#76 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 7 months ago

#75 - [brick] update path SPM.mat file in Level1design brick

Issue - State: closed - Opened by manuegrx 7 months ago - 1 comment

#74 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 7 months ago

#73 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 8 months ago

#72 - Test docker

Pull Request - State: closed - Opened by manuegrx 8 months ago

#71 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 8 months ago

#70 - Create a pipeline to extract signal from ROI for a 4D image

Issue - State: closed - Opened by manuegrx 9 months ago - 7 comments

#69 - CVR documentation

Issue - State: closed - Opened by servoz 9 months ago

#68 - Make the brick to create the individual physiological regressor

Issue - State: closed - Opened by servoz 9 months ago - 1 comment

#67 - Validate the entire CVR pipeline.

Issue - State: closed - Opened by servoz 9 months ago - 6 comments

#66 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 9 months ago

#65 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 10 months ago

#64 - Wrap a MATLAB script in a brick

Issue - State: closed - Opened by manuegrx 10 months ago - 10 comments

#63 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 11 months ago

#62 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 11 months ago

#61 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 11 months ago

#60 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 11 months ago

#59 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago

#58 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago

#57 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago

#55 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago

#54 - Add mrtrix processes

Pull Request - State: closed - Opened by manuegrx about 1 year ago

#53 - MRIQC, ant and func no longer work

Issue - State: closed - Opened by servoz about 1 year ago - 1 comment

#52 - bricks.stat.spm.EstimateModel writes the pyscript.m file to populse_mia package

Issue - State: closed - Opened by servoz about 1 year ago - 6 comments

#51 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago

#50 - Mriqc anat bugfix

Pull Request - State: closed - Opened by manuegrx over 1 year ago

#49 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago

#48 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago

#47 - [bricks in progress] Add contrast outputs for EstimatedModel in Nipype

Issue - State: closed - Opened by manuegrx over 1 year ago - 7 comments

#46 - [iteration] brick Level1design

Issue - State: closed - Opened by manuegrx over 1 year ago - 1 comment

#45 - Fmri spm second level

Pull Request - State: closed - Opened by manuegrx over 1 year ago

#44 - [bricks in progress] Add Factorial design for fmri (spm)

Issue - State: closed - Opened by manuegrx over 1 year ago - 1 comment

#43 - Update mriqc report

Pull Request - State: closed - Opened by manuegrx over 1 year ago

#42 - Update mriqc bold report

Pull Request - State: closed - Opened by manuegrx over 1 year ago

#41 - [test] Compare CerebVascularReact CO2_inahalation pipeline to AMIGO

Issue - State: closed - Opened by manuegrx over 1 year ago - 6 comments

#40 - [general] self.output_directory initialisation issue

Issue - State: closed - Opened by manuegrx over 1 year ago - 6 comments

#39 - [tags inheritance] spm stat bricks

Issue - State: closed - Opened by manuegrx over 1 year ago - 7 comments

#38 - Update spm stat

Pull Request - State: closed - Opened by manuegrx over 1 year ago

#37 - [general purpose] merge preproduction branch in master ASAP

Issue - State: closed - Opened by servoz over 1 year ago - 1 comment

#36 - [documentation] fix all warnings in make html

Issue - State: closed - Opened by servoz over 1 year ago

#35 - [bricks in progress] make the bricks for the automatic report for the CVR

Issue - State: closed - Opened by servoz over 1 year ago - 1 comment

#34 - [documentation] Level1Design, EstimateModel and EstimateContrast

Issue - State: closed - Opened by servoz over 1 year ago - 1 comment

#32 - Remove data brick

Pull Request - State: closed - Opened by manuegrx over 1 year ago

#31 - [MRIQC] Bold_mriqc pipeline iteration issue

Issue - State: closed - Opened by manuegrx over 1 year ago - 5 comments

#30 - [documentation] documentation to be completed for the following bricks

Issue - State: closed - Opened by servoz over 1 year ago - 9 comments

#28 - [bricks in progress] mia_processes.bricks.preprocess.spm.Realign

Issue - State: closed - Opened by servoz over 1 year ago - 2 comments

#27 - add a brick for a mriqc group report

Pull Request - State: closed - Opened by manuegrx over 1 year ago

#26 - Mriqc group report

Pull Request - State: closed - Opened by manuegrx over 1 year ago

#24 - UTs are currently failing

Issue - State: closed - Opened by servoz over 1 year ago - 1 comment

#23 - [bricks in progress] Pipeline for evaluation of cerebrovascular reserve.

Issue - State: closed - Opened by servoz over 1 year ago - 1 comment

#22 - [bricks in progress] EstimateModel and EstimateContrast improvement

Issue - State: closed - Opened by manuegrx over 1 year ago - 9 comments

#21 - [MRIQC] mriqc improvement

Issue - State: closed - Opened by manuegrx over 1 year ago - 1 comment

#20 - [continuous integration] Starting up pre-commit

Issue - State: closed - Opened by servoz over 1 year ago - 1 comment

#19 - Initialization issue when self.requirement = []

Issue - State: closed - Opened by manuegrx over 1 year ago - 1 comment

#18 - Bricks update and documentation

Pull Request - State: closed - Opened by manuegrx over 1 year ago

#16 - MRIQC Anat pipeline: differences with MRIQC v22.06

Issue - State: closed - Opened by manuegrx over 1 year ago - 9 comments

#15 - MRIQC update

Pull Request - State: closed - Opened by manuegrx over 1 year ago

#14 - [requirements] ANTs v2.4.2 does not work with nipype V1.8.5

Issue - State: closed - Opened by servoz about 2 years ago - 7 comments

#13 - [MRIQC] Tag inheritance issue in MRIQC for BOLD

Issue - State: closed - Opened by servoz about 2 years ago - 6 comments

#12 - [reports improvement] Mosaic plot characteristics Improvement

Issue - State: closed - Opened by servoz about 2 years ago - 2 comments

#11 - [Non functional brick] GCOR brick is not working

Issue - State: closed - Opened by LStruber over 2 years ago - 43 comments
Labels: bug

#10 - [V2 controller bug] MIA MRIQC pipelines does not work with V2 controller

Issue - State: closed - Opened by LStruber over 2 years ago - 4 comments
Labels: bug

#9 - [reports improvement] Add plots in the MRIQC report

Issue - State: closed - Opened by LStruber over 2 years ago - 3 comments
Labels: enhancement

#8 - We no longer have the documentation generated by sphinx from the docstring

Issue - State: closed - Opened by servoz over 4 years ago - 2 comments

#7 - [tags inheritance] Improvement of tags inheritance in mia_processes library

Issue - State: open - Opened by servoz over 4 years ago
Labels: enhancement

#6 - setup automatic doc generation on travis-ci

Pull Request - State: closed - Opened by denisri over 4 years ago

#5 - Little error in the databrowser after iteration on 2 patients for the Spatial_preprocessing_1 pipeline

Issue - State: closed - Opened by servoz almost 5 years ago - 1 comment
Labels: enhancement

#4 - built docs are in git sources

Issue - State: closed - Opened by denisri almost 5 years ago - 12 comments

#3 - [documentation] Processes docs

Issue - State: open - Opened by denisri almost 5 years ago - 12 comments
Labels: enhancement

#2 - Update ASL pipeline

Pull Request - State: closed - Opened by BlancaNietoPetinal over 5 years ago - 2 comments

#1 - [Continuous integration] make CI

Issue - State: open - Opened by servoz over 5 years ago - 2 comments
Labels: enhancement