Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / populationgenomics/sample-metadata issues and pull requests

#484 - Bug fix

Pull Request - State: closed - Opened by vivbak over 1 year ago

#483 - function to update family_id in family_participant table

Pull Request - State: open - Opened by EddieLF over 1 year ago - 2 comments

#482 - first draft of family note updating script

Pull Request - State: open - Opened by EddieLF over 1 year ago - 1 comment

#481 - Add infrastructure as code ideas

Pull Request - State: open - Opened by illusional over 1 year ago - 1 comment

#480 - Fixes

Pull Request - State: closed - Opened by vivbak over 1 year ago

#479 - Fix UI sequence groups

Pull Request - State: open - Opened by danielreti over 1 year ago - 8 comments

#478 - Temporarily stop building dev environment

Pull Request - State: closed - Opened by illusional over 1 year ago - 1 comment

#477 - Show all projects on grid

Pull Request - State: open - Opened by illusional over 1 year ago - 1 comment

#476 - Release

Pull Request - State: closed - Opened by danielreti over 1 year ago

#475 - Analysis Runner Grid Fixes

Pull Request - State: closed - Opened by danielreti over 1 year ago - 1 comment

#474 - Bump vite for speeeed

Pull Request - State: closed - Opened by illusional over 1 year ago - 1 comment

#473 - Release

Pull Request - State: closed - Opened by illusional over 1 year ago

#472 - Toggle dark mode

Pull Request - State: closed - Opened by danielreti over 1 year ago - 1 comment

#471 - Audit main upload buckets

Pull Request - State: open - Opened by EddieLF over 1 year ago - 3 comments

#470 - Release "individual_notes" seqr sync

Pull Request - State: closed - Opened by illusional over 1 year ago

#469 - Ensure "individual_notes" from participant metadata is syncing

Pull Request - State: closed - Opened by illusional over 1 year ago - 1 comment

#468 - Release

Pull Request - State: closed - Opened by illusional over 1 year ago

#467 - Fix individual metadata resp check

Pull Request - State: closed - Opened by illusional over 1 year ago - 1 comment

#466 - Add analysis runner view

Pull Request - State: closed - Opened by danielreti over 1 year ago - 1 comment

#465 - Release

Pull Request - State: closed - Opened by cassimons over 1 year ago

#464 - Allow -n = 0 in test creation script when using --add-sample

Pull Request - State: closed - Opened by cassimons over 1 year ago

#463 - Release

Pull Request - State: closed - Opened by vivbak over 1 year ago

#462 - Update Delete Project Endpoint

Pull Request - State: closed - Opened by vivbak over 1 year ago

#461 - Fix seqr sex values in pedigree sync

Pull Request - State: closed - Opened by illusional over 1 year ago - 1 comment

#460 - allow noninteractive running

Pull Request - State: closed - Opened by MattWellie over 1 year ago - 1 comment

#459 - Release

Pull Request - State: closed - Opened by illusional over 1 year ago

#458 - Sequence date added field

Pull Request - State: closed - Opened by EddieLF over 1 year ago - 1 comment

#457 - Bump version: 5.6.0 → 5.6.1

Pull Request - State: closed - Opened by vivbak over 1 year ago

#456 - Release

Pull Request - State: closed - Opened by vivbak over 1 year ago

#455 - Parser Fixes

Pull Request - State: closed - Opened by vivbak over 1 year ago - 3 comments

#454 - Handle Invalid Sample Name/ Missing Sequences

Pull Request - State: closed - Opened by vivbak over 1 year ago - 2 comments

#453 - Sample_sequencing table datetime_added - new field

Pull Request - State: closed - Opened by EddieLF over 1 year ago - 1 comment

#452 - draft sample analysis finder

Pull Request - State: open - Opened by EddieLF over 1 year ago - 4 comments

#450 - Ingestion error when handling fluidX mismatch.

Issue - State: closed - Opened by vivbak over 1 year ago

#449 - Running ingestion on existing samples fails

Issue - State: open - Opened by silkm over 1 year ago

#447 - Add further details on EC ingestion

Pull Request - State: open - Opened by vivbak over 1 year ago - 1 comment

#446 - Add tests for sync-seqr

Pull Request - State: closed - Opened by illusional over 1 year ago - 1 comment

#445 - Fix sample ids in get_sequence_by_criteria

Pull Request - State: closed - Opened by vivbak over 1 year ago - 1 comment

#444 - Fix filter query

Pull Request - State: closed - Opened by danielreti over 1 year ago - 1 comment

#443 - Add quick graphql function

Pull Request - State: closed - Opened by illusional over 1 year ago - 1 comment

#442 - Add fix bad datasets script

Pull Request - State: closed - Opened by illusional over 1 year ago

#441 - Release hotfixes

Pull Request - State: closed - Opened by illusional over 1 year ago

#440 - Include seqr project link for slack notifications

Pull Request - State: closed - Opened by illusional over 1 year ago

#439 - Family id filter fix

Pull Request - State: closed - Opened by danielreti over 1 year ago - 1 comment

#438 - Release Metamist

Pull Request - State: closed - Opened by illusional over 1 year ago

#437 - Catch issues with header

Pull Request - State: closed - Opened by vivbak over 1 year ago - 2 comments

#436 - Release update sequence type

Pull Request - State: closed - Opened by illusional over 1 year ago

#435 - Fix update sequence type

Pull Request - State: closed - Opened by EddieLF over 1 year ago - 1 comment

#434 - Dim mode for swagger

Pull Request - State: closed - Opened by illusional over 1 year ago - 1 comment

#433 - Release

Pull Request - State: closed - Opened by illusional over 1 year ago

#432 - Just duckin' around

Pull Request - State: closed - Opened by illusional over 1 year ago - 2 comments

#431 - DB Backup: Archive before backing up, change date format

Pull Request - State: closed - Opened by illusional over 1 year ago

#430 - Updating participant families in Metamist

Issue - State: open - Opened by EddieLF over 1 year ago - 1 comment

#429 - added filters to front-end

Pull Request - State: closed - Opened by danielreti over 1 year ago - 2 comments

#428 - Modelling deletes & excludes in metamist

Issue - State: open - Opened by EddieLF over 1 year ago

#427 - Sequence type update

Pull Request - State: closed - Opened by EddieLF over 1 year ago - 1 comment

#426 - Sequence type update via api endpoint

Pull Request - State: closed - Opened by EddieLF over 1 year ago - 2 comments

#425 - Release

Pull Request - State: closed - Opened by danielreti over 1 year ago

#424 - Family and report fixes

Pull Request - State: closed - Opened by danielreti over 1 year ago - 1 comment

#423 - Links to exome cram multiQC malformed

Issue - State: closed - Opened by cassimons over 1 year ago

#422 - Fix GraphQL families endpoint

Pull Request - State: closed - Opened by illusional over 1 year ago

#421 - Release

Pull Request - State: closed - Opened by illusional over 1 year ago

#420 - updates from dev to resolve unit test issues

Pull Request - State: closed - Opened by EddieLF over 1 year ago

#419 - Format sample ID for cram map

Pull Request - State: closed - Opened by illusional over 1 year ago - 1 comment

#418 - Release 5.5.6

Pull Request - State: closed - Opened by EddieLF over 1 year ago

#417 - Wiping metadata fields from participants

Issue - State: open - Opened by EddieLF over 1 year ago

#416 - Fastq parser fix

Pull Request - State: closed - Opened by EddieLF over 1 year ago - 2 comments

#415 - Release to fix projects

Pull Request - State: closed - Opened by illusional over 1 year ago

#414 - Fix bad asyncio logic

Pull Request - State: closed - Opened by illusional over 1 year ago - 1 comment

#413 - Release

Pull Request - State: closed - Opened by illusional over 1 year ago

#412 - Small fixes

Pull Request - State: closed - Opened by illusional over 1 year ago - 1 comment

#411 - Additional swagger update fields for samples and participants

Pull Request - State: closed - Opened by EddieLF over 1 year ago - 2 comments

#410 - Adjust matcher logic to allow multigroups

Pull Request - State: closed - Opened by illusional over 1 year ago

#409 - Vite migration

Pull Request - State: closed - Opened by illusional over 1 year ago - 1 comment

#408 - Update participant route to allow external id update

Pull Request - State: closed - Opened by EddieLF over 1 year ago - 1 comment

#407 - New release

Pull Request - State: closed - Opened by EddieLF over 1 year ago

#406 - Bump version: 5.5.3 → 5.5.4

Pull Request - State: closed - Opened by EddieLF over 1 year ago

#405 - Fix web build

Pull Request - State: closed - Opened by illusional over 1 year ago - 1 comment

#404 - Added TangledTree component

Pull Request - State: open - Opened by danielreti over 1 year ago - 2 comments

#403 - Added versioning line

Pull Request - State: closed - Opened by danielreti over 1 year ago - 1 comment

#402 - Analysis cleaner

Pull Request - State: open - Opened by EddieLF over 1 year ago - 5 comments

#401 - regex fix for parsing fastq with trailing digits

Pull Request - State: closed - Opened by EddieLF over 1 year ago - 3 comments

#400 - Regex fix

Pull Request - State: closed - Opened by EddieLF over 1 year ago

#399 - Refactor and graphql

Pull Request - State: closed - Opened by danielreti over 1 year ago - 3 comments

#398 - New mocks for gcs blob optimization

Pull Request - State: closed - Opened by illusional almost 2 years ago - 1 comment

#397 - Fix seq type

Pull Request - State: closed - Opened by vivbak almost 2 years ago - 1 comment

#396 - Release

Pull Request - State: closed - Opened by illusional almost 2 years ago

#395 - First step in addressing sequence technology

Pull Request - State: closed - Opened by EddieLF almost 2 years ago - 1 comment

#394 - Metamist UI Not Displaying CRAM count

Issue - State: open - Opened by vivbak almost 2 years ago - 1 comment

#393 - Add default_sequence_technology to parser

Pull Request - State: closed - Opened by cassimons almost 2 years ago

#392 - Wait for unwaited promise

Pull Request - State: closed - Opened by illusional almost 2 years ago - 1 comment

#391 - Update linter + fix linting

Pull Request - State: closed - Opened by illusional almost 2 years ago - 1 comment

#390 - Fix group by import

Pull Request - State: closed - Opened by illusional almost 2 years ago - 2 comments

#389 - Release

Pull Request - State: closed - Opened by illusional almost 2 years ago - 1 comment

#378 - Sequencing groups

Pull Request - State: open - Opened by illusional almost 2 years ago - 1 comment

#371 - Got basic GraphQL working in frontend

Pull Request - State: closed - Opened by danielreti almost 2 years ago - 5 comments

#357 - Add family view

Pull Request - State: closed - Opened by danielreti almost 2 years ago - 1 comment

#348 - Add sequence_types filter for project grid

Pull Request - State: closed - Opened by illusional almost 2 years ago - 1 comment