Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / populationgenomics/metamist issues and pull requests

#791 - Analysis query fixes

Pull Request - State: closed - Opened by dancoates 6 months ago - 4 comments

#789 - Switch from Chakra UI to Semantic UI

Pull Request - State: closed - Opened by vivbak 6 months ago

#788 - Release

Pull Request - State: closed - Opened by milo-hyben 6 months ago

#787 - Relaxing botocore/boto3 pins.

Pull Request - State: closed - Opened by milo-hyben 6 months ago - 3 comments

#786 - Botocore/Boto3 relax pin

Pull Request - State: closed - Opened by milo-hyben 6 months ago - 2 comments

#785 - Release - fix for config_path errors

Pull Request - State: closed - Opened by dancoates 6 months ago

#784 - fix for analysis runner entries that don't have a config path

Pull Request - State: closed - Opened by dancoates 6 months ago - 1 comment

#783 - Release

Pull Request - State: closed - Opened by vivbak 6 months ago

#782 - query templates via project entry point

Issue - State: open - Opened by vivbak 6 months ago

#781 - Custom Cohorts Fixes

Pull Request - State: closed - Opened by vivbak 6 months ago - 4 comments

#779 - Create Template Endpoint Takes ID as first field

Issue - State: open - Opened by vivbak 6 months ago

#778 - Release

Pull Request - State: closed - Opened by illusional 6 months ago

#777 - Add pseudo contributor role w/o readonly reqs, but write access

Pull Request - State: closed - Opened by illusional 6 months ago - 1 comment

#776 - Update FastAPI + Pydantic

Pull Request - State: closed - Opened by illusional 6 months ago - 1 comment

#775 - Release

Pull Request - State: closed - Opened by EddieLF 6 months ago - 1 comment

#774 - Fix individual metadata for seqr layer headers

Pull Request - State: closed - Opened by EddieLF 6 months ago - 2 comments

#773 - Release

Pull Request - State: closed - Opened by EddieLF 6 months ago

#772 - Fixes to seqr sync

Pull Request - State: closed - Opened by EddieLF 6 months ago - 1 comment

#771 - Updated family view

Pull Request - State: closed - Opened by illusional 6 months ago - 4 comments

#770 - Test Subset Script X Custom Cohorts

Issue - State: closed - Opened by vivbak 6 months ago

#769 - Backoff still not working well

Issue - State: open - Opened by MattWellie 7 months ago - 4 comments
Labels: low priority

#768 - Enum description fields

Issue - State: open - Opened by illusional 7 months ago

#767 - Metamist Infrastructure Documentation

Pull Request - State: closed - Opened by milo-hyben 7 months ago - 1 comment

#766 - OurDNA: Dashboard Frontend

Pull Request - State: closed - Opened by nevoodoo 7 months ago - 1 comment

#765 - Bump version: 6.10.1 → 6.10.2

Pull Request - State: closed - Opened by vivbak 7 months ago - 1 comment

#764 - Release

Pull Request - State: closed - Opened by vivbak 7 months ago - 1 comment

#763 - Fix pedigree query

Pull Request - State: closed - Opened by vivbak 7 months ago - 1 comment

#762 - Query PedigreeInformation via GraphQL broken

Issue - State: closed - Opened by vivbak 7 months ago

#761 - Improving error handling for ETL notifications

Pull Request - State: closed - Opened by milo-hyben 7 months ago - 1 comment

#760 - Participant API get_individual_metadata_template_for_seqr endpoint broken

Issue - State: closed - Opened by EddieLF 7 months ago
Labels: bug

#759 - ETL Subscription should never expire.

Pull Request - State: closed - Opened by milo-hyben 7 months ago - 1 comment

#758 - Rolling back max_delivery_attempts to 5.

Pull Request - State: closed - Opened by milo-hyben 7 months ago - 1 comment

#757 - Update parser sg meta

Pull Request - State: closed - Opened by EddieLF 7 months ago - 5 comments

#756 - Adding new role to etl-load-sa account

Pull Request - State: closed - Opened by milo-hyben 7 months ago - 1 comment

#755 - Release

Pull Request - State: closed - Opened by milo-hyben 7 months ago - 1 comment

#754 - New Analysis field?

Issue - State: open - Opened by MattWellie 7 months ago

#753 - Small changes to ETL load reflecting metamist-parser discovery updates.

Pull Request - State: closed - Opened by milo-hyben 7 months ago - 1 comment

#752 - Forbid fields other than those defined by each model class

Pull Request - State: closed - Opened by jmarshall 7 months ago - 4 comments

#751 - Release

Pull Request - State: closed - Opened by milo-hyben 7 months ago - 1 comment

#750 - OurDNA: Dashboard Backend

Pull Request - State: closed - Opened by nevoodoo 7 months ago - 3 comments
Labels: enhancement

#749 - Refactor graphql schemas

Issue - State: closed - Opened by nevoodoo 7 months ago - 1 comment

#748 - Fixing custom audience attribute for cloud run service.

Pull Request - State: closed - Opened by milo-hyben 7 months ago

#747 - Release

Pull Request - State: closed - Opened by vivbak 7 months ago

#746 - CohortCriteria is bananas!

Issue - State: closed - Opened by vivbak 7 months ago - 4 comments

#745 - Use data loader when querying analyses for cohort

Issue - State: open - Opened by vivbak 7 months ago

#744 - Fix GenericFilter creating conditional with empty list

Pull Request - State: closed - Opened by illusional 7 months ago

#743 - Query fails in strange way when query returns nothing

Issue - State: closed - Opened by vivbak 7 months ago

#742 - OurDNA: Improve project table view and filtering

Pull Request - State: closed - Opened by illusional 7 months ago - 2 comments

#741 - Release

Pull Request - State: closed - Opened by milo-hyben 7 months ago

#740 - Refactor families + add family participants to graphql

Pull Request - State: closed - Opened by illusional 7 months ago - 2 comments

#739 - Longer backoffs between retries

Pull Request - State: closed - Opened by MattWellie 7 months ago - 2 comments

#738 - OurDNA Dashboard

Issue - State: closed - Opened by vivbak 7 months ago

#737 - Check time-dependent tests on CI worker

Pull Request - State: closed - Opened by jmarshall 7 months ago

#736 - Refactor id_format scripts

Issue - State: open - Opened by vivbak 7 months ago

#735 - Optimise/Improve Sequencing Group Query

Issue - State: open - Opened by vivbak 7 months ago

#734 - Environment Lock

Pull Request - State: closed - Opened by nevoodoo 7 months ago

#733 - Pin cpg-utils>=5.0.5

Pull Request - State: closed - Opened by vivbak 7 months ago

#732 - MultiQC report links in Project web page should link to latest report

Issue - State: open - Opened by EddieLF 7 months ago
Labels: bug, improvement

#731 - Add support to view family/participant data in metamist

Issue - State: open - Opened by cassimons 7 months ago
Labels: enhancement

#730 - Billing small fix to show hail batches which have no ar_guid available.

Pull Request - State: closed - Opened by milo-hyben 8 months ago - 1 comment

#729 - Remove max_tries in backoff logic

Pull Request - State: closed - Opened by MattWellie 8 months ago - 3 comments

#728 - Release

Pull Request - State: closed - Opened by milo-hyben 8 months ago

#726 - Final try to convert str to date for populating analysis_runner table.

Pull Request - State: closed - Opened by milo-hyben 8 months ago - 1 comment

#725 - Release 6.9.0

Pull Request - State: closed - Opened by EddieLF 8 months ago

#723 - Making audit_log_id nullable in analysis_runner table.

Pull Request - State: closed - Opened by milo-hyben 8 months ago

#722 - Setting system_versioning_alter_history when ALTER table is called.

Pull Request - State: closed - Opened by milo-hyben 8 months ago - 1 comment

#721 - Capture specific environment variables on write

Pull Request - State: closed - Opened by illusional 8 months ago - 1 comment

#720 - Adds backoff retry to query and query_async

Pull Request - State: closed - Opened by MattWellie 8 months ago - 3 comments

#719 - Release

Pull Request - State: closed - Opened by EddieLF 8 months ago

#718 - Update seqr sync es response

Pull Request - State: closed - Opened by EddieLF 8 months ago

#717 - Analysis runner table fixes

Pull Request - State: closed - Opened by illusional 8 months ago - 4 comments

#716 - Release

Pull Request - State: closed - Opened by milo-hyben 8 months ago

#714 - Load frozen metamist python api client from frozen branch

Pull Request - State: closed - Opened by dancoates 8 months ago - 2 comments

#713 - Use asyncio gather to execute updates in backpopulate library type script

Pull Request - State: closed - Opened by EddieLF 8 months ago - 1 comment

#712 - Billing small fixes

Pull Request - State: closed - Opened by milo-hyben 8 months ago

#711 - Update back_populate_library_type to affect sg meta as well

Pull Request - State: closed - Opened by EddieLF 8 months ago - 7 comments

#710 - bumped actions versions

Pull Request - State: closed - Opened by nevoodoo 8 months ago - 1 comment

#709 - fixed workflows and use new branch

Pull Request - State: closed - Opened by nevoodoo 8 months ago - 1 comment

#708 - Fixed weird commit and merge dev

Pull Request - State: closed - Opened by nevoodoo 8 months ago - 1 comment

#707 - Add ID token auth for invoking cloud run service

Pull Request - State: closed - Opened by nevoodoo 8 months ago - 1 comment

#706 - Fix logical operator for branch check

Pull Request - State: closed - Opened by nevoodoo 8 months ago

#705 - Amend workflow job name

Pull Request - State: closed - Opened by nevoodoo 8 months ago - 1 comment

#704 - Update es-index types for seqr sync API and UI

Pull Request - State: closed - Opened by EddieLF 8 months ago - 1 comment

#703 - Addition of contributor role to metamist permissions

Pull Request - State: closed - Opened by dancoates 8 months ago

#702 - Release

Pull Request - State: closed - Opened by milo-hyben 8 months ago

#701 - GraphQL endpoint for Analysis by ID

Issue - State: closed - Opened by EddieLF 8 months ago - 1 comment
Labels: improvement

#700 - Wrap Query() calls in a retry wrapper

Issue - State: closed - Opened by MattWellie 8 months ago - 2 comments
Labels: improvement

#699 - Refactor analysis-runner into separate table

Pull Request - State: closed - Opened by illusional 9 months ago - 1 comment

#698 - Bump testcontainers and test image

Pull Request - State: closed - Opened by illusional 9 months ago - 1 comment

#697 - Release

Pull Request - State: closed - Opened by milo-hyben 9 months ago

#696 - Add Billing Page - CostByMonth - summary of topic per invoice month.

Pull Request - State: closed - Opened by milo-hyben 9 months ago - 2 comments

#695 - Etl load trials

Pull Request - State: closed - Opened by illusional 9 months ago - 1 comment

#694 - Metamist ETL integration example.

Pull Request - State: closed - Opened by milo-hyben 9 months ago - 5 comments

#693 - Avoid cloudpathlib 0.18.0, which is incompatible with google-cloud-storage 1.43

Pull Request - State: closed - Opened by jmarshall 9 months ago - 7 comments

#692 - Update es-index types for seqr sync API and UI

Pull Request - State: closed - Opened by EddieLF 9 months ago - 4 comments