Ecosyste.ms: Issues

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GitHub / populationgenomics/metamist issues and pull requests

#865 - Update css for project grid table layout

Pull Request - State: closed - Opened by EddieLF 3 months ago - 1 comment

#864 - OurDNA Dashboard Enhancements - UI

Pull Request - State: closed - Opened by nevoodoo 3 months ago - 1 comment

#863 - OurDNA Dashboard Enhancements

Pull Request - State: closed - Opened by nevoodoo 3 months ago - 1 comment

#862 - Release

Pull Request - State: closed - Opened by milo-hyben 3 months ago

#861 - Fix OpenApi type generation for project roles

Pull Request - State: closed - Opened by dancoates 3 months ago - 1 comment

#860 - Add new BBV fields to the dashboard

Pull Request - State: closed - Opened by nevoodoo 3 months ago - 1 comment

#859 - Billing metamist compare with gcp

Pull Request - State: open - Opened by milo-hyben 3 months ago - 1 comment

#858 - Release - Permissions system update and profiling improvements

Pull Request - State: closed - Opened by dancoates 3 months ago

#857 - Permissions system update (redux)

Pull Request - State: closed - Opened by dancoates 3 months ago

#856 - First Class Files

Pull Request - State: closed - Opened by nevoodoo 3 months ago - 1 comment

#855 - Performance profiling improvements

Pull Request - State: closed - Opened by dancoates 3 months ago - 1 comment

#854 - Modelling deletes & updates in metamist

Issue - State: open - Opened by EddieLF 3 months ago - 6 comments

#853 - Release: Restrict create_test_subset to GVCFs and CRAMs (#852)

Pull Request - State: closed - Opened by illusional 3 months ago

#852 - Restrict create_test_subset to GVCFs and CRAMs

Pull Request - State: closed - Opened by illusional 3 months ago - 1 comment

#851 - Release

Pull Request - State: closed - Opened by illusional 3 months ago

#850 - Fix get sequencing groups by analysis IDs

Pull Request - State: closed - Opened by illusional 3 months ago - 1 comment

#849 - Participant / Sample External IDs in parser

Pull Request - State: closed - Opened by illusional 3 months ago - 1 comment

#848 - Billing small fixes

Pull Request - State: closed - Opened by milo-hyben 3 months ago - 2 comments

#847 - Fix project selector usage + fail tests on tsc build failure

Pull Request - State: closed - Opened by illusional 3 months ago - 4 comments

#846 - Release: Participant grid hot fixes (#845)

Pull Request - State: closed - Opened by illusional 3 months ago

#845 - Participant grid hot fixes

Pull Request - State: closed - Opened by illusional 3 months ago - 1 comment

#844 - Release: Improved project table view

Pull Request - State: closed - Opened by illusional 3 months ago

#843 - Bump to latest Strawberry

Pull Request - State: closed - Opened by patrick91 3 months ago - 1 comment

#840 - Add support for nested samples

Pull Request - State: closed - Opened by illusional 3 months ago - 1 comment

#839 - Release: OurDNA Temporary Filter and Logic Patch

Pull Request - State: closed - Opened by nevoodoo 3 months ago

#838 - FIx lost sample aggregation logic

Pull Request - State: closed - Opened by nevoodoo 3 months ago - 1 comment

#837 - Added ebld sample filtering temporarily

Pull Request - State: closed - Opened by nevoodoo 3 months ago - 1 comment

#836 - Workaround for graphql performance issue when using generic input types

Pull Request - State: closed - Opened by dancoates 3 months ago - 2 comments

#835 - Release

Pull Request - State: closed - Opened by milo-hyben 3 months ago

#834 - Improve value filter rendering in participant grid

Pull Request - State: closed - Opened by illusional 3 months ago

#833 - Link AnalysisRunnerGrid with BillingCostByAnalysis

Pull Request - State: closed - Opened by milo-hyben 4 months ago

#832 - Seqr Layer - Update saved variants API call response code discrepancy

Issue - State: open - Opened by EddieLF 4 months ago - 2 comments
Labels: bug

#831 - Update fix_pbmc_sample_participant.py script for multiple external ids

Pull Request - State: closed - Opened by jmarshall 4 months ago - 1 comment

#830 - Release 7.1.1

Pull Request - State: closed - Opened by EddieLF 4 months ago

#829 - Metamist permissions system update

Pull Request - State: closed - Opened by dancoates 4 months ago - 3 comments

#828 - Get_cram_paths external IDs fix

Pull Request - State: closed - Opened by EddieLF 4 months ago - 2 comments

#826 - Release

Pull Request - State: closed - Opened by jmarshall 4 months ago - 1 comment

#825 - Handle multiple participant external_ids in create_test_subset.py

Pull Request - State: closed - Opened by jmarshall 4 months ago - 1 comment

#824 - Hotfix for external IDs on the Project Grid

Pull Request - State: closed - Opened by illusional 4 months ago - 2 comments

#823 - Improved table filtering

Pull Request - State: closed - Opened by illusional 4 months ago - 1 comment

#822 - Release

Pull Request - State: closed - Opened by jmarshall 4 months ago

#821 - Refactor all *.from_db() routines to use from_db_json()

Pull Request - State: open - Opened by jmarshall 4 months ago - 1 comment

#820 - Release

Pull Request - State: closed - Opened by illusional 4 months ago

#819 - Fix broken OurDNA Dashboard

Pull Request - State: closed - Opened by nevoodoo 4 months ago

#818 - Release

Pull Request - State: closed - Opened by nevoodoo 4 months ago

#817 - Release

Pull Request - State: closed - Opened by EddieLF 4 months ago

#816 - Update generic_parser from_json return after ingestion

Pull Request - State: closed - Opened by EddieLF 4 months ago

#815 - Fix mismatch between epid and esid in create_test_subset

Pull Request - State: closed - Opened by vivbak 4 months ago - 1 comment

#814 - Create Test Subset Fails When epid != esid

Issue - State: closed - Opened by vivbak 4 months ago

#813 - Add support for cohorts in create_test_subset script

Pull Request - State: closed - Opened by vivbak 4 months ago - 1 comment

#812 - Release

Pull Request - State: closed - Opened by milo-hyben 4 months ago

#810 - 🚑 Release

Pull Request - State: closed - Opened by illusional 4 months ago

#809 - :ambulance: Fix for Billing -> costByAnalysis report.

Pull Request - State: closed - Opened by milo-hyben 4 months ago - 1 comment

#808 - Refactor UI Charts

Issue - State: closed - Opened by nevoodoo 4 months ago - 1 comment
Labels: improvement

#807 - Empty Cohorts Silently Fail

Issue - State: open - Opened by vivbak 4 months ago - 1 comment

#806 - Release

Pull Request - State: closed - Opened by milo-hyben 4 months ago

#805 - :bug: Fix for graphQL when query project->cohorts by id.

Pull Request - State: closed - Opened by milo-hyben 4 months ago - 2 comments

#804 - Added a filter option for querying analysis by ids

Pull Request - State: closed - Opened by nevoodoo 4 months ago - 1 comment

#803 - Unpin requests

Pull Request - State: closed - Opened by nevoodoo 4 months ago - 2 comments

#802 - Auditor improvements and optimizations

Issue - State: open - Opened by EddieLF 4 months ago
Labels: bug, enhancement

#801 - Long read ingest - exclude existing seq fields from sg meta

Pull Request - State: closed - Opened by EddieLF 4 months ago - 1 comment

#800 - Release

Pull Request - State: closed - Opened by EddieLF 4 months ago

#799 - Update SG meta typing to dict[str, Any]

Pull Request - State: closed - Opened by EddieLF 4 months ago - 1 comment

#798 - 'AnalysisInternal' object has no attribute 'sample_ids'

Issue - State: closed - Opened by MattWellie 4 months ago - 2 comments

#797 - Release

Pull Request - State: closed - Opened by EddieLF 4 months ago

#796 - Release (7.0.0)

Pull Request - State: closed - Opened by illusional 4 months ago

#795 - Analysis update endpoint doesn't allow updating `active`

Issue - State: closed - Opened by dancoates 4 months ago - 1 comment

#794 - Use the correct field name in test/data/generate_data.py

Pull Request - State: closed - Opened by jmarshall 4 months ago

#793 - Assorted Cohort Fixes

Pull Request - State: closed - Opened by vivbak 4 months ago - 3 comments

#792 - Pin requests to 2.31.0 due to breaking change

Pull Request - State: closed - Opened by nevoodoo 4 months ago - 1 comment

#791 - Analysis query fixes

Pull Request - State: closed - Opened by dancoates 5 months ago - 4 comments

#789 - Switch from Chakra UI to Semantic UI

Pull Request - State: closed - Opened by vivbak 5 months ago

#788 - Release

Pull Request - State: closed - Opened by milo-hyben 5 months ago

#787 - Relaxing botocore/boto3 pins.

Pull Request - State: closed - Opened by milo-hyben 5 months ago - 3 comments

#786 - Botocore/Boto3 relax pin

Pull Request - State: closed - Opened by milo-hyben 5 months ago - 2 comments

#785 - Release - fix for config_path errors

Pull Request - State: closed - Opened by dancoates 5 months ago

#784 - fix for analysis runner entries that don't have a config path

Pull Request - State: closed - Opened by dancoates 5 months ago - 1 comment

#783 - Release

Pull Request - State: closed - Opened by vivbak 5 months ago

#782 - query templates via project entry point

Issue - State: open - Opened by vivbak 5 months ago

#781 - Custom Cohorts Fixes

Pull Request - State: closed - Opened by vivbak 5 months ago - 4 comments

#779 - Create Template Endpoint Takes ID as first field

Issue - State: open - Opened by vivbak 5 months ago

#778 - Release

Pull Request - State: closed - Opened by illusional 5 months ago

#777 - Add pseudo contributor role w/o readonly reqs, but write access

Pull Request - State: closed - Opened by illusional 5 months ago - 1 comment

#776 - Update FastAPI + Pydantic

Pull Request - State: closed - Opened by illusional 5 months ago - 1 comment

#775 - Release

Pull Request - State: closed - Opened by EddieLF 5 months ago - 1 comment

#774 - Fix individual metadata for seqr layer headers

Pull Request - State: closed - Opened by EddieLF 5 months ago - 2 comments

#773 - Release

Pull Request - State: closed - Opened by EddieLF 5 months ago

#772 - Fixes to seqr sync

Pull Request - State: closed - Opened by EddieLF 5 months ago - 1 comment

#771 - Updated family view

Pull Request - State: closed - Opened by illusional 5 months ago - 4 comments

#770 - Test Subset Script X Custom Cohorts

Issue - State: closed - Opened by vivbak 5 months ago

#769 - Backoff still not working well

Issue - State: open - Opened by MattWellie 5 months ago - 4 comments
Labels: low priority

#768 - Enum description fields

Issue - State: open - Opened by illusional 5 months ago

#767 - Metamist Infrastructure Documentation

Pull Request - State: closed - Opened by milo-hyben 5 months ago - 1 comment

#766 - OurDNA: Dashboard Frontend

Pull Request - State: closed - Opened by nevoodoo 5 months ago - 1 comment