Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / populationgenomics/analysis-runner issues and pull requests
#707 - Copy recently added server source files to the server image
Pull Request -
State: open - Opened by jmarshall 11 days ago
#706 - Don't add comment printing command if there are no comments to print
Pull Request -
State: closed - Opened by jmarshall 12 days ago
- 1 comment
#705 - Remove gvcf_info from VCF export scripts
Pull Request -
State: open - Opened by MattWellie 12 days ago
#704 - Configure Dependabot
Pull Request -
State: open - Opened by nevoodoo 16 days ago
#703 - Pip-Audit
Pull Request -
State: open - Opened by nevoodoo 16 days ago
#702 - Add sonarqube to test workflow
Pull Request -
State: open - Opened by violetbrina 21 days ago
#701 - Add workflow for deploying dataproc image
Pull Request -
State: open - Opened by illusional 2 months ago
#700 - More accumulated dataproc Dockerfile changes (and miscellanea)
Pull Request -
State: closed - Opened by jmarshall 2 months ago
#699 - Hail 0.2.132 switched from raw setup.py to module build
Pull Request -
State: closed - Opened by jmarshall 2 months ago
#698 - Add environment to copy-dataproc-init-script
Pull Request -
State: closed - Opened by illusional 2 months ago
#697 - Update dataproc release docs
Pull Request -
State: closed - Opened by illusional 2 months ago
#696 - Refactor cromwell endpoint
Pull Request -
State: closed - Opened by illusional 2 months ago
#695 - Support repo-less execution + refactor
Pull Request -
State: closed - Opened by illusional 2 months ago
#694 - Support repo-less execution + refactor
Pull Request -
State: closed - Opened by illusional 2 months ago
#693 - Question
Issue -
State: open - Opened by MattWellie 2 months ago
- 1 comment
#692 - Fix recursive call
Pull Request -
State: closed - Opened by EddieLF 3 months ago
- 1 comment
#691 - Use cromwell API, not file
Pull Request -
State: closed - Opened by EddieLF 3 months ago
#690 - Parse cromwell workflow metadata script
Pull Request -
State: closed - Opened by EddieLF 3 months ago
#688 - Modify HT copy behaviour
Pull Request -
State: closed - Opened by MattWellie 4 months ago
#687 - Upgrade pinned version of cpg-utils in analysis-runner web
Pull Request -
State: closed - Opened by dancoates 4 months ago
- 2 comments
#686 - Validation of analysis-runner invocation args
Issue -
State: open - Opened by MattWellie 5 months ago
#685 - Environment Lock
Pull Request -
State: closed - Opened by nevoodoo 6 months ago
#684 - Update pinned cpg-utils version in dataproc install common script
Pull Request -
State: closed - Opened by EddieLF 6 months ago
#683 - Fix metamist keys for ar-integration
Pull Request -
State: closed - Opened by illusional 6 months ago
#682 - Alter Docker build file
Pull Request -
State: closed - Opened by MattWellie 6 months ago
- 3 comments
#681 - Stream as bytes, not text
Pull Request -
State: closed - Opened by illusional 6 months ago
#680 - Quote curl params
Pull Request -
State: closed - Opened by illusional 6 months ago
#679 - Update driver image to 1.5
Pull Request -
State: closed - Opened by illusional 6 months ago
#678 - Move some methods to cpg-utils
Pull Request -
State: closed - Opened by illusional 7 months ago
#677 - Update analysis-runner -> metamist creator script
Pull Request -
State: closed - Opened by illusional 7 months ago
#676 - Untar files update
Pull Request -
State: open - Opened by EddieLF 7 months ago
- 1 comment
#675 - Update linters again
Pull Request -
State: closed - Opened by illusional 7 months ago
#674 - Update linters
Pull Request -
State: closed - Opened by illusional 7 months ago
#673 - Add branch name as attribute
Pull Request -
State: closed - Opened by illusional 7 months ago
#672 - Improve docs + error message
Pull Request -
State: closed - Opened by illusional 9 months ago
#671 - Add --storage as CLI argument
Pull Request -
State: closed - Opened by MattWellie 9 months ago
#670 - Fix print-identity-token on deploy
Pull Request -
State: closed - Opened by illusional 9 months ago
#669 - Revert Dockerfile CMD notation change
Pull Request -
State: closed - Opened by illusional 9 months ago
#668 - Unset server-secret during deploy
Pull Request -
State: closed - Opened by illusional 9 months ago
#668 - Unset server-secret during deploy
Pull Request -
State: closed - Opened by illusional 9 months ago
#667 - Bump + pin web versions
Pull Request -
State: closed - Opened by illusional 9 months ago
#667 - Bump + pin web versions
Pull Request -
State: closed - Opened by illusional 9 months ago
#666 - Update untar script with cpg_utils import changes
Pull Request -
State: closed - Opened by EddieLF 9 months ago
#666 - Update untar script with cpg_utils import changes
Pull Request -
State: closed - Opened by EddieLF 9 months ago
#665 - Update README with link to infrastructure-private tokens
Pull Request -
State: closed - Opened by EddieLF 9 months ago
#665 - Update README with link to infrastructure-private tokens
Pull Request -
State: open - Opened by EddieLF 9 months ago
#664 - Analysis-runner should use latest set of pre-commit hooks
Issue -
State: open - Opened by illusional 9 months ago
Labels: good first issue
#664 - Analysis-runner should use latest set of pre-commit hooks
Issue -
State: open - Opened by illusional 9 months ago
Labels: good first issue
#663 - Dataproc: Force reinstall of cpg-utils
Pull Request -
State: closed - Opened by illusional 9 months ago
#662 - Link to driver job, instead of just batch
Pull Request -
State: closed - Opened by illusional 9 months ago
- 1 comment
#661 - Analysis runner should convert an floating image tag to a docker digest
Issue -
State: open - Opened by illusional 9 months ago
#660 - Extend minimum watch interval
Pull Request -
State: closed - Opened by MattWellie 10 months ago
- 1 comment
#659 - Fix metadata URL construction + typing
Pull Request -
State: closed - Opened by illusional 10 months ago
#658 - Reduce cromwell polling
Pull Request -
State: closed - Opened by MattWellie 10 months ago
#657 - Use driver image as default in https transfer jobs
Pull Request -
State: closed - Opened by EddieLF 10 months ago
#656 - Use workload identity federation
Pull Request -
State: closed - Opened by illusional 10 months ago
#655 - Fix init script path for dataproc
Pull Request -
State: closed - Opened by illusional 11 months ago
#654 - Transition examples to use cpg_utils.get_batch
Pull Request -
State: closed - Opened by illusional 11 months ago
#653 - Fix tag ordering during deploy
Pull Request -
State: closed - Opened by illusional 11 months ago
#652 - Mount secret value directly
Pull Request -
State: closed - Opened by illusional 11 months ago
#651 - Ensure ar-guid starts alpha
Pull Request -
State: closed - Opened by illusional 11 months ago
#650 - Create copy_gencode_to_main.sh
Pull Request -
State: closed - Opened by hopedisastro 12 months ago
- 1 comment
#649 - Complete prefix for allowed images in main
Pull Request -
State: closed - Opened by MattWellie 12 months ago
#648 - Add ar_guid support to analysis-runner + package
Pull Request -
State: closed - Opened by illusional about 1 year ago
#647 - Update analysis-server requirements
Pull Request -
State: closed - Opened by illusional about 1 year ago
#646 - Corrected driver image detection
Pull Request -
State: closed - Opened by MattWellie about 1 year ago
#645 - Analysis runner bug - assuming config on import
Issue -
State: open - Opened by illusional about 1 year ago
#644 - Update hail in dataproc and support multiple versions
Pull Request -
State: closed - Opened by daniaki about 1 year ago
#643 - Pass workflow ID file as a string
Pull Request -
State: closed - Opened by MattWellie over 1 year ago
#642 - Use the existing command wrapper
Pull Request -
State: closed - Opened by MattWellie over 1 year ago
#641 - Import constant within packaged Watcher job
Pull Request -
State: closed - Opened by MattWellie over 1 year ago
#640 - Fixed syntax in job command executing python script
Pull Request -
State: closed - Opened by EddieLF over 1 year ago
#639 - Change to mounted storage directory in unzip wrapper script
Pull Request -
State: closed - Opened by EddieLF over 1 year ago
#638 - Export logs to analysis
Pull Request -
State: closed - Opened by MattWellie over 1 year ago
#637 - Copy out Final Cromwell workflow Logs to a readable directory
Issue -
State: open - Opened by MattWellie over 1 year ago
#636 - Bump version: 2.40.8 → 2.40.9
Pull Request -
State: closed - Opened by MattWellie over 1 year ago
#635 - Create copy_cram_for_str.sh
Pull Request -
State: open - Opened by hopedisastro over 1 year ago
#634 - Add metamist to driver image
Pull Request -
State: closed - Opened by illusional over 1 year ago
#633 - Add script for copying reference truth
Pull Request -
State: closed - Opened by MattWellie over 1 year ago
- 1 comment
#632 - correction to cromwell metadata API call
Pull Request -
State: closed - Opened by MattWellie over 1 year ago
- 1 comment
#631 - Collected minor fixes
Pull Request -
State: closed - Opened by jmarshall over 1 year ago
#630 - Generic files to release
Pull Request -
State: closed - Opened by EddieLF over 1 year ago
#629 - added billing project argument to cram releaser script
Pull Request -
State: closed - Opened by EddieLF over 1 year ago
#628 - Dataproc wheel issue
Issue -
State: closed - Opened by illusional over 1 year ago
- 1 comment
#627 - update to allow .tar files to be unzipped
Pull Request -
State: closed - Opened by EddieLF over 1 year ago
- 3 comments
#626 - Create copy_eh_to_analysis.sh
Pull Request -
State: closed - Opened by hopedisastro over 1 year ago
#625 - Don't use deprecated download_as_string method
Pull Request -
State: closed - Opened by lgruen over 1 year ago
#624 - Switch to chunked response encoding
Pull Request -
State: closed - Opened by lgruen over 1 year ago
#623 - Create copy_female_calls.sh
Pull Request -
State: closed - Opened by hopedisastro over 1 year ago
#622 - Create copy_mergedstr.sh
Pull Request -
State: closed - Opened by hopedisastro over 1 year ago
#621 - Patch asyncio early
Pull Request -
State: closed - Opened by lgruen over 1 year ago
#620 - Revert "Limit analysis-runner server workers to 1"
Pull Request -
State: closed - Opened by lgruen over 1 year ago
#619 - argument to remove filtered rows
Pull Request -
State: closed - Opened by MattWellie over 1 year ago
#618 - Limit analysis-runner server workers to 1
Pull Request -
State: closed - Opened by lgruen over 1 year ago
#617 - Revert to Hail 0.2.105 for Dataproc once more
Pull Request -
State: closed - Opened by lgruen over 1 year ago
#616 - Install botocore manually in Dataproc init script
Pull Request -
State: closed - Opened by lgruen over 1 year ago
#615 - suppress infinite loop failure mode
Pull Request -
State: closed - Opened by MattWellie over 1 year ago
#614 - Cromwell status watcher fix
Pull Request -
State: closed - Opened by MattWellie over 1 year ago
#613 - Remove crams + indexes and somaliers from bucket directory
Pull Request -
State: closed - Opened by EddieLF over 1 year ago
- 2 comments
#612 - Try Hail 0.2.110 for Dataproc again
Pull Request -
State: closed - Opened by lgruen over 1 year ago