Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / popsim-consortium/stdpopsim issues and pull requests
#1585 - various fixes after msprime api updates
Pull Request -
State: open - Opened by silastittes about 1 month ago
- 3 comments
#1584 - beware of recapitation and missing data
Issue -
State: open - Opened by petrelharp about 1 month ago
- 1 comment
#1581 - Catalog updates
Pull Request -
State: closed - Opened by petrelharp about 2 months ago
- 2 comments
#1580 - Document what sort of intervals `contig.add_dfe` expects
Issue -
State: open - Opened by nspope 2 months ago
#1579 - should post-SLiM simplify have `keep_input_roots=True`?
Issue -
State: open - Opened by petrelharp 2 months ago
- 9 comments
#1578 - test regions outside left, right aren't simulated; closes #1577
Pull Request -
State: closed - Opened by petrelharp 3 months ago
- 1 comment
#1577 - add test that nothing is simulated outside of `left-right` on both msprime and slim
Issue -
State: closed - Opened by petrelharp 3 months ago
#1576 - allow users to enable SLiM on Windows if they Really Want To
Issue -
State: closed - Opened by petrelharp 3 months ago
- 1 comment
#1575 - Update changelog for 0.2.1a release
Pull Request -
State: closed - Opened by nspope 3 months ago
- 1 comment
#1574 - more windows CI
Pull Request -
State: open - Opened by petrelharp 3 months ago
#1573 - revisit ExtendedEvents docs
Issue -
State: open - Opened by petrelharp 3 months ago
#1572 - debug windows CI
Pull Request -
State: closed - Opened by petrelharp 3 months ago
#1571 - enable slim on windows
Pull Request -
State: open - Opened by petrelharp 3 months ago
- 8 comments
#1570 - Remove shifting of coordinates
Pull Request -
State: closed - Opened by petrelharp 3 months ago
- 1 comment
#1569 - Move sweep API and extended events from `stdpopsim.ext` to `stdpopsim`
Pull Request -
State: closed - Opened by nspope 3 months ago
- 3 comments
#1568 - macos runners >12 won't support conda
Issue -
State: open - Opened by nspope 3 months ago
#1567 - Fix SLiM time units warning, bump minimum version to 4.0
Pull Request -
State: closed - Opened by nspope 3 months ago
- 2 comments
#1566 - numpy v2 and requirements.txt
Issue -
State: open - Opened by petrelharp 3 months ago
- 1 comment
#1565 - Release 0.2.1 checklist
Issue -
State: open - Opened by andrewkern 3 months ago
- 3 comments
Labels: enhancement
#1564 - migration rates fixed to be consistent with the code (issue #1562)
Pull Request -
State: closed - Opened by jiseonmin 4 months ago
- 2 comments
#1563 - SLiM Support in Windows
Issue -
State: open - Opened by daikitag 4 months ago
- 3 comments
Labels: enhancement
#1562 - Typo in documentation?
Issue -
State: closed - Opened by jiseonmin 4 months ago
- 3 comments
#1561 - move PhoSin QC where it should go
Pull Request -
State: closed - Opened by petrelharp 5 months ago
- 5 comments
#1560 - added QC for vaquita DFE
Pull Request -
State: closed - Opened by ckyriazis 5 months ago
- 4 comments
#1558 - Restarting simulations in SLiM engine (community.allScriptBlocks.active property)
Issue -
State: closed - Opened by jmurga 5 months ago
- 3 comments
Labels: bug
#1557 - document QC procedure for DFEs
Issue -
State: open - Opened by petrelharp 6 months ago
#1556 - Getting started with DFE for MusMus
Pull Request -
State: open - Opened by peterdfields 6 months ago
#1555 - DFE for MusMus
Issue -
State: open - Opened by peterdfields 6 months ago
- 10 comments
Labels: enhancement
#1554 - orangutan model how to add adaptive introgression?
Issue -
State: open - Opened by h-pawar 6 months ago
- 1 comment
#1553 - updates to hash codes and file names
Pull Request -
State: closed - Opened by silastittes 7 months ago
- 11 comments
#1552 - change to pip install in dev docs
Issue -
State: open - Opened by petrelharp 7 months ago
#1551 - cached files need python version information in filenames
Issue -
State: closed - Opened by petrelharp 7 months ago
- 15 comments
#1550 - remove custom log message editing (closes #1545)
Pull Request -
State: closed - Opened by petrelharp 7 months ago
- 3 comments
#1549 - time units mismatch warning
Issue -
State: closed - Opened by petrelharp 7 months ago
- 1 comment
#1548 - QC for DFE model Gamma_R22 for Vaquita (PhoSin)
Issue -
State: closed - Opened by igronau 7 months ago
- 9 comments
Labels: Model QC
#1547 - Implementation for Vaquita DFE
Pull Request -
State: closed - Opened by igronau 7 months ago
- 2 comments
#1546 - Mutation model
Issue -
State: open - Opened by daikitag 8 months ago
- 1 comment
Labels: enhancement, good first issue
#1545 - error in logging from SLiM engine
Issue -
State: closed - Opened by petrelharp 8 months ago
#1544 - Deprecated pandas operation (`Calling int on a single element Series`)
Issue -
State: closed - Opened by daikitag 8 months ago
- 2 comments
#1541 - Add detail about SLiM install to installation docs
Issue -
State: open - Opened by hyanwong 11 months ago
- 2 comments
Labels: enhancement
#1540 - add docs for using DFEs in other species
Pull Request -
State: closed - Opened by petrelharp 11 months ago
- 1 comment
#1539 - Mus mus Cox map, try two
Pull Request -
State: open - Opened by peterdfields 11 months ago
- 3 comments
#1538 - Vaquita QC
Pull Request -
State: closed - Opened by ckyriazis 11 months ago
- 6 comments
#1537 - new checksums
Pull Request -
State: closed - Opened by chriscrsmith 11 months ago
- 4 comments
#1536 - updated to ensembl release 110; did some patching
Pull Request -
State: open - Opened by andrewkern 11 months ago
- 3 comments
#1535 - Add journal & volume / page to citation
Pull Request -
State: closed - Opened by hyanwong 11 months ago
- 3 comments
#1534 - Fix find-conda step in tests.yml
Pull Request -
State: closed - Opened by nspope 12 months ago
- 1 comment
#1533 - Replicate CI failure
Pull Request -
State: closed - Opened by nspope 12 months ago
- 1 comment
#1532 - Fix conda failure in CI
Pull Request -
State: closed - Opened by nspope 12 months ago
- 2 comments
#1531 - Implemented QC for three mouse demographic models
Pull Request -
State: closed - Opened by igronau 12 months ago
- 2 comments
#1530 - QC for Vaquita2Epoch_1R22 (PhoSin)
Issue -
State: closed - Opened by igronau 12 months ago
- 1 comment
Labels: Model QC
#1529 - Fix CI
Issue -
State: closed - Opened by petrelharp 12 months ago
- 5 comments
#1528 - QC for DomesticusEurope_1F22, MusculusKorea_1F22, and CastaneusIndia_1F22 (MusMus)
Issue -
State: closed - Opened by igronau 12 months ago
- 2 comments
Labels: Model QC
#1526 - Implemented 2-epoch demographic model for Vaquita
Pull Request -
State: closed - Opened by igronau 12 months ago
- 5 comments
#1525 - QC for Vaquita
Issue -
State: closed - Opened by igronau 12 months ago
- 1 comment
Labels: Species QC
#1524 - fixup of QC for OrySat (Rice) model BottleneckMigration_3C07
Pull Request -
State: closed - Opened by petrelharp 12 months ago
- 1 comment
#1523 - failing tests
Issue -
State: closed - Opened by petrelharp 12 months ago
- 2 comments
#1522 - bug fix on annotation script
Pull Request -
State: closed - Opened by andrewkern 12 months ago
- 1 comment
#1521 - What to do about shifting ensembl build?
Issue -
State: open - Opened by petrelharp 12 months ago
- 11 comments
#1520 - PhoSin annotations
Pull Request -
State: closed - Opened by chriscrsmith 12 months ago
- 9 comments
#1518 - test that requirements in `setup.cfg` are sufficient
Issue -
State: open - Opened by petrelharp about 1 year ago
#1517 - Adding GorGor species and demography
Pull Request -
State: open - Opened by ChristianHuber about 1 year ago
- 5 comments
#1515 - Error on import: ModuleNotFoundError: No module named 'scipy
Issue -
State: closed - Opened by gregorgorjanc about 1 year ago
- 4 comments
#1514 - Vaquita species add
Pull Request -
State: closed - Opened by igronau about 1 year ago
- 5 comments
#1513 - Bump sphinx from 5.0.2 to 7.2.5 in /requirements/CI
Pull Request -
State: open - Opened by dependabot[bot] about 1 year ago
Labels: dependencies
#1512 - Bump pytest from 7.3.2 to 7.4.1 in /requirements/CI
Pull Request -
State: open - Opened by dependabot[bot] about 1 year ago
- 1 comment
Labels: dependencies
#1511 - Bump sphinx from 5.0.2 to 7.2.4 in /requirements/CI
Pull Request -
State: closed - Opened by dependabot[bot] about 1 year ago
- 1 comment
Labels: dependencies
#1510 - Bump sphinx from 5.0.2 to 7.2.2 in /requirements/CI
Pull Request -
State: closed - Opened by dependabot[bot] about 1 year ago
- 1 comment
Labels: dependencies
#1509 - include parameter values in catalogue for DFEs
Issue -
State: closed - Opened by petrelharp about 1 year ago
Labels: enhancement
#1508 - add vaquita
Issue -
State: closed - Opened by petrelharp about 1 year ago
- 10 comments
Labels: enhancement
#1507 - QC for new DFE: "generic" human DFE
Issue -
State: open - Opened by chriscrsmith about 1 year ago
#1506 - Bump sphinx from 4.3.2 to 7.1.2 in /requirements/CI
Pull Request -
State: closed - Opened by dependabot[bot] about 1 year ago
- 1 comment
Labels: dependencies
#1505 - adding "generic" human DFE
Pull Request -
State: closed - Opened by chriscrsmith about 1 year ago
- 11 comments
#1504 - add fox?
Issue -
State: closed - Opened by petrelharp about 1 year ago
- 4 comments
Labels: enhancement
#1503 - Bump flake8 from 5.0.4 to 6.1.0 in /requirements/CI
Pull Request -
State: open - Opened by dependabot[bot] about 1 year ago
- 1 comment
Labels: dependencies
#1502 - Bump sphinx from 4.3.2 to 7.1.1 in /requirements/CI
Pull Request -
State: closed - Opened by dependabot[bot] about 1 year ago
- 1 comment
Labels: dependencies
#1501 - Bump sphinx from 4.3.2 to 7.1.0 in /requirements/CI
Pull Request -
State: closed - Opened by dependabot[bot] about 1 year ago
- 1 comment
Labels: dependencies
#1500 - Ancient Europe demographic model
Issue -
State: closed - Opened by apragsdale about 1 year ago
- 2 comments
#1499 - remove python 3.7 from CI?
Issue -
State: closed - Opened by petrelharp about 1 year ago
- 2 comments
#1498 - h-s relationship (closes #1488)
Pull Request -
State: closed - Opened by petrelharp over 1 year ago
- 11 comments
#1497 - Bump pytest from 7.2.1 to 7.4.0 in /requirements/CI
Pull Request -
State: closed - Opened by dependabot[bot] over 1 year ago
- 2 comments
Labels: dependencies
#1496 - bug in adding mutations to the recapitated portion of the tree sequence
Issue -
State: open - Opened by mufernando over 1 year ago
- 4 comments
#1495 - document how to simulate from one species' DFE with another species
Issue -
State: closed - Opened by petrelharp over 1 year ago
- 1 comment
#1494 - add 'best' DFE from Kyriazis et al
Issue -
State: closed - Opened by petrelharp over 1 year ago
- 4 comments
#1493 - Pandas warning: Calling int on a single element Series is deprecated and will raise a TypeError
Issue -
State: closed - Opened by hyanwong over 1 year ago
- 1 comment
#1492 - add uniform DFE (closes #1481)
Pull Request -
State: closed - Opened by petrelharp over 1 year ago
- 3 comments
#1491 - Bump pytest from 7.2.1 to 7.3.2 in /requirements/CI
Pull Request -
State: closed - Opened by dependabot[bot] over 1 year ago
- 2 comments
Labels: dependencies
#1490 - Use codecov upload token
Pull Request -
State: closed - Opened by nspope over 1 year ago
- 2 comments
#1489 - Bump version of macOS runner
Pull Request -
State: closed - Opened by nspope over 1 year ago
- 1 comment
#1488 - add discretized h-s relationship DFE
Issue -
State: closed - Opened by petrelharp over 1 year ago
- 4 comments
#1487 - Add final changes
Pull Request -
State: closed - Opened by ornobalam over 1 year ago
- 5 comments
#1486 - Bump pytest-xdist from 3.2.0 to 3.3.1 in /requirements/CI
Pull Request -
State: open - Opened by dependabot[bot] over 1 year ago
- 2 comments
Labels: dependencies
#1485 - add mus mus domesticus demographic model
Pull Request -
State: closed - Opened by peterdfields over 1 year ago
- 20 comments
#1484 - QC for LogNormalDFE (HomSap)
Issue -
State: open - Opened by RyanGutenkunst over 1 year ago
Labels: Model QC
#1483 - teensy tiny typo in the citation of the American admixture demographi…
Pull Request -
State: closed - Opened by gtsambos over 1 year ago
- 2 comments
#1482 - Changed parameters for rice
Pull Request -
State: closed - Opened by ornobalam over 1 year ago
- 5 comments
#1481 - add `uniform` DFE
Issue -
State: closed - Opened by petrelharp over 1 year ago
Labels: enhancement
#1480 - Add Human Lognormal DFE
Pull Request -
State: closed - Opened by RyanGutenkunst over 1 year ago
- 3 comments
#1479 - AraTha DFE QC
Pull Request -
State: open - Opened by petrelharp over 1 year ago
- 2 comments
#1478 - Fix factor of 2 in Gamma_K17 DFE
Pull Request -
State: closed - Opened by RyanGutenkunst over 1 year ago
- 4 comments