Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / popgenmethods/momi2 issues and pull requests

#77 - How to make a hybrid model in momi2

Issue - State: open - Opened by bshahid5 13 days ago

#76 - Question about： Encountered AssertionError When Adding a Migration Event

Issue - State: open - Opened by LeiHuang66 about 1 month ago - 1 comment

#75 - Basic question about momi2

Issue - State: open - Opened by kmanoharan01 4 months ago

#74 - Expected sfs of a demographic model from msprime

Issue - State: open - Opened by trevorcousins 6 months ago

#73 - readthedocs broken (development version)

Issue - State: closed - Opened by jackkamm 11 months ago - 1 comment

#71 - Model choice--AICc

Issue - State: open - Opened by AndreMonc over 1 year ago - 2 comments

#69 - Failing to build momi on MAC

Issue - State: open - Opened by Ephraim-usc almost 2 years ago - 1 comment

#68 - ValueError: I/O operation on closed file

Issue - State: open - Opened by tobitliyandja almost 2 years ago

#67 - Advice on modelling one pop over time.

Issue - State: closed - Opened by Hjorvik almost 2 years ago - 2 comments

#66 - ValueError: not enough values to unpack (expected 2, got 0)

Issue - State: open - Opened by XiaXiaTianTian almost 2 years ago - 1 comment

#65 - No BED provided, will need to specify length manually with mutation rate

Issue - State: closed - Opened by XiaXiaTianTian almost 2 years ago - 2 comments

#64 - Difference in magnitude between expected SFS and SFS from data

Issue - State: open - Opened by trevorcousins about 2 years ago - 1 comment

#63 - Convert dict to momi.sfs object

Issue - State: open - Opened by trevorcousins about 2 years ago - 6 comments

#62 - Bug in fit_within_pop_diversity()

Issue - State: closed - Opened by trevorcousins about 2 years ago - 1 comment

#61 - scipy.linalg pinv2 - deprecated

Issue - State: closed - Opened by trevorcousins over 2 years ago - 1 comment

#60 - simulate_data() doesn't work with lambda params

Issue - State: open - Opened by jackkamm over 2 years ago

#59 - momi.events.DemographyError

Issue - State: open - Opened by pengyan19 over 2 years ago - 10 comments

#58 - Can momi2 deal with hybridization?

Issue - State: open - Opened by SC-Duan over 2 years ago - 1 comment

#57 - deleted

Issue - State: closed - Opened by huanglei-artificium over 2 years ago

#56 - Momi and multiprocessing

Issue - State: closed - Opened by noscode over 2 years ago - 2 comments

#55 - Better error message for ascertained population with 1 allele

Issue - State: open - Opened by jackkamm almost 3 years ago

#54 - pop was already removed by previous move_lineages

Issue - State: closed - Opened by Github-Yilei almost 3 years ago - 2 comments

#53 - Error during likelihood evaluation for data from the paper

Issue - State: closed - Opened by noscode almost 3 years ago - 2 comments

#52 - Potential issue with gcc when installing momi on a Windows10 WSL

Issue - State: open - Opened by ChrystelleDelord about 3 years ago - 1 comment

#51 - Improve build robustness to missing numpy

Issue - State: open - Opened by jackkamm about 3 years ago

#50 - Builds failing on recent versions of macOS

Issue - State: open - Opened by jackkamm about 3 years ago

#49 - Improve readthedocs.io API navigation

Issue - State: open - Opened by jackkamm about 3 years ago

#48 - Support the Demes specification

Issue - State: open - Opened by jackkamm about 3 years ago

#47 - Switch from autograd to jax

Issue - State: open - Opened by jackkamm about 3 years ago

#46 - Compute allele counts error

Issue - State: open - Opened by mahmood225 over 3 years ago - 3 comments

#45 - Wrong KL value returned by optimize

Issue - State: open - Opened by yss1 almost 4 years ago - 5 comments

#44 - plotting issue

Issue - State: closed - Opened by XuexueLiu almost 4 years ago - 1 comment

#43 - Unable to install it

Issue - State: closed - Opened by huanglei-artificium almost 4 years ago - 3 comments

#42 - ongoing migration

Issue - State: closed - Opened by glaudelrio almost 4 years ago - 2 comments

#41 - MemoryError: Unable to allocate 4.18 TiB...

Issue - State: closed - Opened by Erythroxylum about 4 years ago - 2 comments

#40 - VCF files reading error: fetch requires index

Issue - State: closed - Opened by AlexLlanesQuevedo about 4 years ago - 2 comments

#39 - Update to work with networkx 2.4+

Pull Request - State: closed - Opened by jackkamm about 4 years ago

#38 - Update dependency on networkx

Issue - State: closed - Opened by alanaw1 almost 5 years ago - 1 comment

#37 - Error when computing allele counts

Issue - State: closed - Opened by deponent-verb about 5 years ago - 2 comments

#36 - Document convert.sfs_from_dadi

Issue - State: closed - Opened by jackkamm about 5 years ago

#35 - Cryptic description of p_missing.

Issue - State: closed - Opened by Hjorvik over 5 years ago - 3 comments

#34 - Feature request: Support ANGSD format SFS

Issue - State: open - Opened by biozzq over 5 years ago - 2 comments

#33 - Support networkx 2.4+

Issue - State: closed - Opened by jackkamm over 5 years ago - 4 comments

#32 - Only build for Python 3.7

Pull Request - State: closed - Opened by jackkamm over 5 years ago

#31 - Error importing momi

Issue - State: closed - Opened by cae803 over 5 years ago - 2 comments

#30 - Jupyter notebook kernel dies

Issue - State: closed - Opened by mgsantos66 over 5 years ago - 1 comment

#29 - momi2 exception, growth parameters

Issue - State: closed - Opened by plibrado over 5 years ago - 7 comments

#28 - Error computing allele counts.

Issue - State: closed - Opened by Hjorvik over 5 years ago - 4 comments

#27 - How to determine the best model

Issue - State: closed - Opened by silvewheat over 5 years ago - 1 comment

#26 - Saving demographic plots

Issue - State: closed - Opened by isisarantes almost 6 years ago - 1 comment

#24 - Estimating migration Kernel has died

Issue - State: closed - Opened by isisarantes about 6 years ago - 6 comments

#23 - Update setup.py to fix failing build.

Pull Request - State: closed - Opened by terhorst about 6 years ago - 1 comment

#22 - Improvements for large samples

Pull Request - State: closed - Opened by terhorst about 6 years ago - 2 comments

#21 - Ghost population necessary for an introgression model?

Issue - State: closed - Opened by oushujun about 6 years ago - 1 comment

#20 - Multithreading control?

Issue - State: closed - Opened by grafau about 6 years ago - 3 comments

#19 - RuntimeError: can't start new thread

Issue - State: closed - Opened by oushujun about 6 years ago - 1 comment

#18 - How momi2 deals with strong bottleneck(s)

Issue - State: closed - Opened by oushujun about 6 years ago - 4 comments

#17 - Getting unique config array for subset of populations

Issue - State: closed - Opened by grafau about 6 years ago - 3 comments

#16 - Can the current momi2 run on multiple compute nodes?

Issue - State: closed - Opened by lsuhpchelp about 6 years ago - 1 comment

#15 - Segmentation fault and various numpy issues with CentOS 7.5.1804

Issue - State: closed - Opened by grafau about 6 years ago - 5 comments

#14 - Document add_pulse_param() using a function

Issue - State: closed - Opened by isaacovercast over 6 years ago - 7 comments

#13 - Questions about repetitions and N_e values in momi2

Issue - State: closed - Opened by SergioB1983 over 6 years ago - 1 comment

#12 - Max. number of function evaluations reached

Issue - State: closed - Opened by zy-ke over 6 years ago - 2 comments

#10 - Adding momi.data.convert.sfs_from_dadi() function and a test routine.

Pull Request - State: closed - Opened by isaacovercast over 6 years ago - 1 comment

#9 - bug in Sfs.fold()

Issue - State: closed - Opened by isaacovercast over 6 years ago - 2 comments

#8 - move_lineages population order

Issue - State: closed - Opened by cjbattey over 6 years ago - 2 comments

#7 - Missing Data and the question of implementing a hypergeometric projection method

Issue - State: closed - Opened by isaacovercast over 6 years ago - 6 comments
Labels: enhancement

#6 - Guidance on pronunciation

Issue - State: closed - Opened by isaacovercast over 6 years ago - 3 comments

#5 - Be specific about where to find OpenMP-enabled clang in OSX installation instructions

Pull Request - State: closed - Opened by thomas-a-neil over 6 years ago - 1 comment

#4 - Installation using conda

Issue - State: closed - Opened by yss1 almost 7 years ago - 9 comments

#3 - Inconsistent log likelihood

Issue - State: closed - Opened by chanjed almost 7 years ago - 1 comment

#2 - No valid SNPs read

Issue - State: closed - Opened by aylwyn almost 7 years ago - 7 comments

#1 - py3k support

Pull Request - State: closed - Opened by terhorst about 9 years ago - 2 comments