Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / popgenmethods/momi2 issues and pull requests
#74 - Expected sfs of a demographic model from msprime
Issue -
State: open - Opened by trevorcousins about 1 month ago
#73 - readthedocs broken (development version)
Issue -
State: closed - Opened by jackkamm 7 months ago
- 1 comment
#71 - Model choice--AICc
Issue -
State: open - Opened by AndreMonc about 1 year ago
- 2 comments
#70 - The query for momo.read_vcf whether need so many memory (1.2t)? Is it normal?
Issue -
State: open - Opened by baiwenhuim about 1 year ago
#69 - Failing to build momi on MAC
Issue -
State: open - Opened by Ephraim-usc over 1 year ago
- 1 comment
#68 - ValueError: I/O operation on closed file
Issue -
State: open - Opened by tobitliyandja over 1 year ago
#67 - Advice on modelling one pop over time.
Issue -
State: closed - Opened by Hjorvik over 1 year ago
- 2 comments
#66 - ValueError: not enough values to unpack (expected 2, got 0)
Issue -
State: open - Opened by XiaXiaTianTian over 1 year ago
- 1 comment
#65 - No BED provided, will need to specify length manually with mutation rate
Issue -
State: closed - Opened by XiaXiaTianTian over 1 year ago
- 2 comments
#64 - Difference in magnitude between expected SFS and SFS from data
Issue -
State: open - Opened by trevorcousins over 1 year ago
- 1 comment
#63 - Convert dict to momi.sfs object
Issue -
State: open - Opened by trevorcousins over 1 year ago
- 6 comments
#62 - Bug in fit_within_pop_diversity()
Issue -
State: closed - Opened by trevorcousins almost 2 years ago
- 1 comment
#61 - scipy.linalg pinv2 - deprecated
Issue -
State: closed - Opened by trevorcousins almost 2 years ago
- 1 comment
#60 - simulate_data() doesn't work with lambda params
Issue -
State: open - Opened by jackkamm almost 2 years ago
#59 - momi.events.DemographyError
Issue -
State: open - Opened by pengyan19 almost 2 years ago
- 10 comments
#58 - Can momi2 deal with hybridization?
Issue -
State: open - Opened by SC-Duan about 2 years ago
- 1 comment
#57 - deleted
Issue -
State: closed - Opened by huanglei-artificium about 2 years ago
#56 - Momi and multiprocessing
Issue -
State: closed - Opened by noscode about 2 years ago
- 2 comments
#55 - Better error message for ascertained population with 1 allele
Issue -
State: open - Opened by jackkamm over 2 years ago
#54 - pop was already removed by previous move_lineages
Issue -
State: closed - Opened by Github-Yilei over 2 years ago
- 2 comments
#53 - Error during likelihood evaluation for data from the paper
Issue -
State: closed - Opened by noscode over 2 years ago
- 2 comments
#52 - Potential issue with gcc when installing momi on a Windows10 WSL
Issue -
State: open - Opened by ChrystelleDelord over 2 years ago
- 1 comment
#51 - Improve build robustness to missing numpy
Issue -
State: open - Opened by jackkamm almost 3 years ago
#50 - Builds failing on recent versions of macOS
Issue -
State: open - Opened by jackkamm almost 3 years ago
#49 - Improve readthedocs.io API navigation
Issue -
State: open - Opened by jackkamm almost 3 years ago
#48 - Support the Demes specification
Issue -
State: open - Opened by jackkamm almost 3 years ago
#47 - Switch from autograd to jax
Issue -
State: open - Opened by jackkamm almost 3 years ago
#46 - Compute allele counts error
Issue -
State: open - Opened by mahmood225 about 3 years ago
- 3 comments
#45 - Wrong KL value returned by optimize
Issue -
State: open - Opened by yss1 over 3 years ago
- 5 comments
#44 - plotting issue
Issue -
State: closed - Opened by XuexueLiu over 3 years ago
- 1 comment
#43 - Unable to install it
Issue -
State: closed - Opened by huanglei-artificium over 3 years ago
- 3 comments
#42 - ongoing migration
Issue -
State: closed - Opened by glaudelrio over 3 years ago
- 2 comments
#41 - MemoryError: Unable to allocate 4.18 TiB...
Issue -
State: closed - Opened by Erythroxylum over 3 years ago
- 2 comments
#40 - VCF files reading error: fetch requires index
Issue -
State: closed - Opened by AlexLlanesQuevedo almost 4 years ago
- 2 comments
#39 - Update to work with networkx 2.4+
Pull Request -
State: closed - Opened by jackkamm almost 4 years ago
#38 - Update dependency on networkx
Issue -
State: closed - Opened by alanaw1 over 4 years ago
- 1 comment
#37 - Error when computing allele counts
Issue -
State: closed - Opened by deponent-verb almost 5 years ago
- 2 comments
#36 - Document convert.sfs_from_dadi
Issue -
State: closed - Opened by jackkamm almost 5 years ago
#35 - Cryptic description of p_missing.
Issue -
State: closed - Opened by Hjorvik almost 5 years ago
- 3 comments
#34 - Feature request: Support ANGSD format SFS
Issue -
State: open - Opened by biozzq almost 5 years ago
- 2 comments
#33 - Support networkx 2.4+
Issue -
State: closed - Opened by jackkamm almost 5 years ago
- 4 comments
#32 - Only build for Python 3.7
Pull Request -
State: closed - Opened by jackkamm almost 5 years ago
#31 - Error importing momi
Issue -
State: closed - Opened by cae803 almost 5 years ago
- 2 comments
#30 - Jupyter notebook kernel dies
Issue -
State: closed - Opened by mgsantos66 almost 5 years ago
- 1 comment
#29 - momi2 exception, growth parameters
Issue -
State: closed - Opened by plibrado about 5 years ago
- 7 comments
#28 - Error computing allele counts.
Issue -
State: closed - Opened by Hjorvik about 5 years ago
- 4 comments
#27 - How to determine the best model
Issue -
State: closed - Opened by silvewheat over 5 years ago
- 1 comment
#26 - Saving demographic plots
Issue -
State: closed - Opened by isisarantes over 5 years ago
- 1 comment
#25 - ImportError: /miniconda3/lib/python3.6/site-packages/../../libgsl.so.23: undefined symbol: cblas_dasum
Issue -
State: closed - Opened by kevinmneal over 5 years ago
- 7 comments
#24 - Estimating migration Kernel has died
Issue -
State: closed - Opened by isisarantes over 5 years ago
- 6 comments
#23 - Update setup.py to fix failing build.
Pull Request -
State: closed - Opened by terhorst over 5 years ago
- 1 comment
#22 - Improvements for large samples
Pull Request -
State: closed - Opened by terhorst over 5 years ago
- 2 comments
#21 - Ghost population necessary for an introgression model?
Issue -
State: closed - Opened by oushujun over 5 years ago
- 1 comment
#20 - Multithreading control?
Issue -
State: closed - Opened by grafau over 5 years ago
- 3 comments
#19 - RuntimeError: can't start new thread
Issue -
State: closed - Opened by oushujun over 5 years ago
- 1 comment
#18 - How momi2 deals with strong bottleneck(s)
Issue -
State: closed - Opened by oushujun almost 6 years ago
- 4 comments
#17 - Getting unique config array for subset of populations
Issue -
State: closed - Opened by grafau almost 6 years ago
- 3 comments
#16 - Can the current momi2 run on multiple compute nodes?
Issue -
State: closed - Opened by lsuhpchelp almost 6 years ago
- 1 comment
#15 - Segmentation fault and various numpy issues with CentOS 7.5.1804
Issue -
State: closed - Opened by grafau almost 6 years ago
- 5 comments
#14 - Document add_pulse_param() using a function
Issue -
State: closed - Opened by isaacovercast almost 6 years ago
- 7 comments
#13 - Questions about repetitions and N_e values in momi2
Issue -
State: closed - Opened by SergioB1983 almost 6 years ago
- 1 comment
#12 - Max. number of function evaluations reached
Issue -
State: closed - Opened by zy-ke about 6 years ago
- 2 comments
#11 - FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated
Issue -
State: closed - Opened by jiyongkun about 6 years ago
- 1 comment
#10 - Adding momi.data.convert.sfs_from_dadi() function and a test routine.
Pull Request -
State: closed - Opened by isaacovercast about 6 years ago
- 1 comment
#9 - bug in Sfs.fold()
Issue -
State: closed - Opened by isaacovercast about 6 years ago
- 2 comments
#8 - move_lineages population order
Issue -
State: closed - Opened by cjbattey about 6 years ago
- 2 comments
#7 - Missing Data and the question of implementing a hypergeometric projection method
Issue -
State: closed - Opened by isaacovercast about 6 years ago
- 6 comments
Labels: enhancement
#6 - Guidance on pronunciation
Issue -
State: closed - Opened by isaacovercast about 6 years ago
- 3 comments
#5 - Be specific about where to find OpenMP-enabled clang in OSX installation instructions
Pull Request -
State: closed - Opened by thomas-a-neil over 6 years ago
- 1 comment
#4 - Installation using conda
Issue -
State: closed - Opened by yss1 over 6 years ago
- 9 comments
#3 - Inconsistent log likelihood
Issue -
State: closed - Opened by chanjed over 6 years ago
- 1 comment
#2 - No valid SNPs read
Issue -
State: closed - Opened by aylwyn over 6 years ago
- 7 comments
#1 - py3k support
Pull Request -
State: closed - Opened by terhorst almost 9 years ago
- 2 comments