Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / polarityjam/polarityjam issues and pull requests

#162 - symmetry

Pull Request - State: open - Opened by jpalbrecht 24 days ago

#161 - add-feret-diameter

Issue - State: open - Opened by wgiese about 1 month ago

#160 - load and safe a collection

Issue - State: open - Opened by jpalbrecht about 2 months ago

#159 - Rename major to minor ratio

Pull Request - State: closed - Opened by jpalbrecht about 2 months ago

#158 - additional cellpose parameter: iteration

Pull Request - State: closed - Opened by jpalbrecht 3 months ago

#157 - fix import error, fix microsam plotting problem

Pull Request - State: closed - Opened by jpalbrecht 3 months ago

#156 - safe dataset when crashing

Issue - State: open - Opened by jpalbrecht 3 months ago

#155 - Asymmetry

Pull Request - State: closed - Opened by jpalbrecht 4 months ago

#149 - fix cell partition bug when cue_direction != 0

Pull Request - State: closed - Opened by jpalbrecht 7 months ago

#147 - user error in marker_cue_directional_intensity_ratio

Issue - State: open - Opened by wgiese 7 months ago

#146 - version 0.2.1

Pull Request - State: closed - Opened by jpalbrecht 8 months ago

#145 - update cellpose default param

Pull Request - State: closed - Opened by jpalbrecht 8 months ago

#144 - Plugin structure

Pull Request - State: closed - Opened by jpalbrecht 8 months ago

#141 - Suggestion : why not use Cellpose3 for segmentation ?

Issue - State: open - Opened by RossezA 8 months ago - 2 comments

#140 - 122 self trained model error

Pull Request - State: closed - Opened by wgiese 8 months ago

#139 - complete correlation analysis documentation

Issue - State: open - Opened by wgiese 8 months ago

#138 - Issue : no .csv files output & warnings

Issue - State: open - Opened by RossezA 9 months ago - 6 comments

#137 - fix minor wording

Pull Request - State: closed - Opened by jpalbrecht 10 months ago

#136 - Update README.md

Pull Request - State: closed - Opened by jpalbrecht 10 months ago

#135 - add citation information to solution

Pull Request - State: closed - Opened by jpalbrecht 10 months ago

#134 - Using polygons as input

Issue - State: open - Opened by pakiessling 10 months ago - 1 comment

#133 - Fix solution

Pull Request - State: closed - Opened by jpalbrecht 10 months ago

#132 - fix colors for golgi segmentation plot

Pull Request - State: closed - Opened by jpalbrecht 10 months ago

#131 - readthedocs integration

Pull Request - State: closed - Opened by jpalbrecht 10 months ago

#130 - add readthedocs configuration

Pull Request - State: closed - Opened by jpalbrecht 10 months ago

#129 - version 0.2.0

Pull Request - State: closed - Opened by jpalbrecht 10 months ago

#128 - Version 0.2.0

Pull Request - State: closed - Opened by jpalbrecht 10 months ago

#127 - update citation information

Pull Request - State: closed - Opened by jpalbrecht 10 months ago

#125 - PyYAML installation issue on mac

Issue - State: open - Opened by jpalbrecht 10 months ago

#124 - 121 plot junction features

Pull Request - State: closed - Opened by jpalbrecht 10 months ago - 1 comment

#123 - add option to set a manual threshold for junction intensity masks

Pull Request - State: closed - Opened by jpalbrecht 10 months ago - 1 comment

#122 - self_trained_model_error

Issue - State: closed - Opened by wgiese 10 months ago - 1 comment

#121 - plot_junction_features

Issue - State: closed - Opened by wgiese 10 months ago - 1 comment

#120 - 114 generalize circular statistics computation and output

Pull Request - State: closed - Opened by wgiese 11 months ago

#119 - 64 mandatory junction channel

Pull Request - State: closed - Opened by jpalbrecht 11 months ago

#118 - multiple marker channel

Issue - State: open - Opened by jpalbrecht 11 months ago

#117 - fix faulty polygon sorting

Pull Request - State: closed - Opened by jpalbrecht about 1 year ago

#116 - Improve visualization

Pull Request - State: closed - Opened by jpalbrecht about 1 year ago

#115 - Deep cell extra params

Pull Request - State: closed - Opened by Scaramir about 1 year ago

#114 - generalize circular statistics computation and output

Issue - State: closed - Opened by wgiese about 1 year ago

#113 - 111 compute polarity index for each image

Pull Request - State: closed - Opened by wgiese about 1 year ago

#112 - 110 add computation of ratio nuc to cytosol intensity and mem to cytosol

Pull Request - State: closed - Opened by wgiese about 1 year ago

#111 - compute_polarity_index_for_each_image

Issue - State: closed - Opened by wgiese about 1 year ago - 1 comment

#109 - Dev

Pull Request - State: closed - Opened by wgiese about 1 year ago

#108 - 107 add zenodo citation

Pull Request - State: closed - Opened by wgiese about 1 year ago

#107 - add zenodo citation

Issue - State: closed - Opened by wgiese about 1 year ago

#106 - Improve segmentation api

Pull Request - State: closed - Opened by jpalbrecht about 1 year ago

#105 - changes from issue 103

Pull Request - State: closed - Opened by wgiese about 1 year ago

#104 - 103 rename estimated cell diameter nucleus to estimated nucleus diameter

Pull Request - State: closed - Opened by wgiese about 1 year ago

#103 - Rename estimated_cell_diameter_nucleus to estimated_nucleus_diameter

Issue - State: closed - Opened by wgiese about 1 year ago - 1 comment

#102 - update dev branch

Pull Request - State: closed - Opened by wgiese about 1 year ago

#101 - 94 implement circularity and shape index

Pull Request - State: closed - Opened by wgiese about 1 year ago

#100 - throw error if collection is empty

Issue - State: closed - Opened by wgiese about 1 year ago - 1 comment

#99 - adapt example paramter file

Issue - State: closed - Opened by wgiese about 1 year ago - 1 comment

#98 - 94 implement circularity and shape index

Pull Request - State: closed - Opened by wgiese over 1 year ago

#97 - 93 specify columns for key file conditions in parameter file

Pull Request - State: closed - Opened by wgiese over 1 year ago

#96 - add jupyter notebook to requirements

Issue - State: closed - Opened by jpalbrecht over 1 year ago - 1 comment

#95 - Create possibility to select computed features

Issue - State: open - Opened by wgiese over 1 year ago

#94 - implement circularity and shape index

Issue - State: closed - Opened by wgiese over 1 year ago - 1 comment

#93 - specify columns for key file conditions in parameter file

Issue - State: closed - Opened by wgiese over 1 year ago - 1 comment

#92 - Merge pull request #91 from polarityjam/dev

Pull Request - State: closed - Opened by wgiese over 1 year ago

#91 - fix SAM segmentation plugin

Pull Request - State: closed - Opened by jpalbrecht over 1 year ago

#90 - Fix sam segment

Pull Request - State: closed - Opened by jpalbrecht over 1 year ago

#89 - fix import structure

Pull Request - State: closed - Opened by jpalbrecht over 1 year ago

#88 - fix test import structure

Pull Request - State: closed - Opened by jpalbrecht over 1 year ago

#87 - Version 0.1.5

Pull Request - State: closed - Opened by jpalbrecht over 1 year ago

#86 - optional channel normalization

Pull Request - State: closed - Opened by jpalbrecht over 1 year ago

#85 - move remove small object and clear borders outside segmentation algorithm

Issue - State: closed - Opened by jpalbrecht over 1 year ago - 1 comment

#84 - 79 user defined deactivate graph computation

Pull Request - State: closed - Opened by wgiese over 1 year ago

#83 - partition_single_cell_mask produces rare error

Issue - State: open - Opened by wgiese over 1 year ago

#82 - Web app panel A docu

Pull Request - State: closed - Opened by wgiese over 1 year ago

#81 - Improved nuclei segmentation and sc centering

Pull Request - State: closed - Opened by jpalbrecht over 1 year ago

#80 - Make removal of isolated cells optional

Issue - State: closed - Opened by jpalbrecht over 1 year ago - 1 comment

#79 - User defined deactivate graph computation

Issue - State: closed - Opened by wgiese over 1 year ago - 1 comment

#78 - Dev

Pull Request - State: closed - Opened by jpalbrecht over 1 year ago

#77 - Fix nuc displacement plot

Pull Request - State: closed - Opened by jpalbrecht over 1 year ago

#76 - UserWarning: The weights matrix is not fully connected:

Issue - State: open - Opened by jpalbrecht over 1 year ago - 1 comment

#75 - Error in manual installation of the app

Issue - State: closed - Opened by marieouarne over 1 year ago - 1 comment

#74 - mesmer deepcell segmentation support

Issue - State: closed - Opened by jpalbrecht over 1 year ago - 1 comment

#73 - Dev

Pull Request - State: closed - Opened by jpalbrecht over 1 year ago

#72 - fix parameters docs

Pull Request - State: closed - Opened by jpalbrecht over 1 year ago

#71 - fix docs

Pull Request - State: closed - Opened by jpalbrecht over 1 year ago

#70 - fix note box

Pull Request - State: closed - Opened by jpalbrecht over 1 year ago

#69 - version 0.1.3

Pull Request - State: closed - Opened by jpalbrecht over 1 year ago

#68 - enable workflows for the dev branch

Pull Request - State: closed - Opened by jpalbrecht over 1 year ago

#67 - fix parameters from yml, update docu, adapt tests, improve typing

Pull Request - State: closed - Opened by jpalbrecht over 1 year ago

#66 - Update solution

Pull Request - State: closed - Opened by jpalbrecht over 1 year ago

#65 - lif stack file integration

Issue - State: open - Opened by jpalbrecht over 1 year ago

#64 - mandatory junction channel

Issue - State: closed - Opened by jpalbrecht over 1 year ago - 2 comments

#63 - bump version 0.1.2

Pull Request - State: closed - Opened by jpalbrecht over 1 year ago

#62 - include package data

Pull Request - State: closed - Opened by jpalbrecht over 1 year ago

#61 - bump version 0.1.1

Pull Request - State: closed - Opened by jpalbrecht over 1 year ago

#60 - Fix pypi packaging

Pull Request - State: closed - Opened by jpalbrecht over 1 year ago

#59 - fix pypi packaging

Pull Request - State: closed - Opened by jpalbrecht over 1 year ago

#58 - Album solution

Pull Request - State: closed - Opened by jpalbrecht over 1 year ago

#57 - fix homepage

Pull Request - State: closed - Opened by jpalbrecht almost 2 years ago