point-cloud-radar/bird-cloud-gnn issues and pull requests

#142 - Release v0.1.0

Pull Request - State: closed - Opened by lyashevska about 1 year ago - 1 comment

#141 - Add the software to research software directory

Issue - State: open - Opened by lyashevska about 1 year ago

#140 - Fix readthedocs build

Issue - State: closed - Opened by lyashevska over 1 year ago - 1 comment

#139 - Fix test_gnn_model failing test

Issue - State: closed - Opened by lyashevska over 1 year ago - 1 comment
Labels: bug

#138 - Dynamic layers

Pull Request - State: closed - Opened by lyashevska over 1 year ago - 1 comment

#137 - Dynamic amount of layers

Issue - State: open - Opened by lyashevska over 1 year ago

#136 - Check weights for graph conv

Issue - State: open - Opened by bart1 over 1 year ago

#135 - tracking hyper parameters

Issue - State: open - Opened by bart1 over 1 year ago

#134 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: open - Opened by pre-commit-ci[bot] over 1 year ago - 1 comment

#133 - shuffle in dataloader

Pull Request - State: closed - Opened by bart1 over 1 year ago

#132 - Shuffling in dataloader

Issue - State: closed - Opened by bart1 over 1 year ago - 1 comment

#131 - Omit files for more correct progress bar

Issue - State: open - Opened by bart1 over 1 year ago

#130 - Skip cache

Pull Request - State: closed - Opened by bart1 over 1 year ago - 2 comments

#129 - Implement scheduler to change learning rate

Pull Request - State: closed - Opened by abelsiqueira over 1 year ago - 2 comments

#128 - Add oneline_description for model and dataset

Pull Request - State: closed - Opened by abelsiqueira over 1 year ago - 1 comment

#127 - Log run naming

Issue - State: open - Opened by abelsiqueira over 1 year ago

#126 - Update cross_validation.py

Pull Request - State: closed - Opened by bart1 over 1 year ago - 1 comment

#125 - Add option to connect all nodes to poi

Pull Request - State: closed - Opened by abelsiqueira over 1 year ago - 1 comment

#124 - Implement missing indicator features

Pull Request - State: closed - Opened by abelsiqueira over 1 year ago - 5 comments

#123 - make points_of interest option

Pull Request - State: closed - Opened by bart1 over 1 year ago - 1 comment

#122 - Add histograms and rates to tensorboard and generale output function

Pull Request - State: closed - Opened by bart1 over 1 year ago - 1 comment

#121 - Don't use the tree when num_nodes equals 1

Pull Request - State: closed - Opened by abelsiqueira over 1 year ago - 1 comment

#120 - Using num_nodes=1 raises error

Issue - State: closed - Opened by abelsiqueira over 1 year ago
Labels: bug

#119 - Rename num_neighbours to num_nodes

Pull Request - State: closed - Opened by abelsiqueira over 1 year ago - 1 comment

#118 - forward arguments for naming #117

Pull Request - State: closed - Opened by bart1 over 1 year ago - 2 comments

#117 - Add proper label to tensorboard

Issue - State: closed - Opened by abelsiqueira over 1 year ago - 1 comment

#116 - Consider using feature embedding

Issue - State: open - Opened by abelsiqueira over 1 year ago - 1 comment

#115 - Fix random seed everywhere

Issue - State: closed - Opened by abelsiqueira over 1 year ago - 2 comments

#114 - Check whether random initialization is in place

Issue - State: open - Opened by abelsiqueira over 1 year ago

#113 - Track more info on tensorboard

Issue - State: closed - Opened by abelsiqueira over 1 year ago - 2 comments

#112 - Implement fit_and_evaluate and callbacks

Pull Request - State: closed - Opened by abelsiqueira over 1 year ago - 1 comment

#111 - Add progress bar to RadarDataset

Pull Request - State: closed - Opened by abelsiqueira over 1 year ago - 2 comments

#110 - Add progress bar to radar dataset creation from folder

Issue - State: closed - Opened by abelsiqueira over 1 year ago

#109 - Skip files that don't have enough points to create a neighbourhood

Pull Request - State: closed - Opened by abelsiqueira over 1 year ago - 3 comments

#108 - Bug: Skip files that have less than `num_neighbours` neighbours

Issue - State: closed - Opened by abelsiqueira over 1 year ago - 1 comment
Labels: bug

#107 - Label specific point or full subgraph

Issue - State: open - Opened by bart1 over 1 year ago - 1 comment

#106 - add inference method

Pull Request - State: closed - Opened by bart1 over 1 year ago - 1 comment

#105 - Remove n_splits (int, optional) arg

Issue - State: open - Opened by lyashevska over 1 year ago

#104 - Should we add pyarrow as dependency

Issue - State: open - Opened by abelsiqueira over 1 year ago
Labels: question

#103 - Accept empty datasets

Pull Request - State: closed - Opened by abelsiqueira over 1 year ago - 1 comment

#102 - Save and load model

Issue - State: open - Opened by lyashevska over 1 year ago
Labels: data-pipeline

#101 - Add Leave one origin out cross validation

Pull Request - State: closed - Opened by abelsiqueira over 1 year ago - 1 comment

#100 - Fix random_state for RadarDataset

Issue - State: open - Opened by abelsiqueira over 1 year ago

#99 - Failure to generate dataset for `NLDHL_pvol_20200322T1900_6234.h5.csv.gz`

Issue - State: closed - Opened by bart1 over 1 year ago - 1 comment

#98 - Add origin and max_edge_distance to RadarDataset cache

Pull Request - State: closed - Opened by abelsiqueira over 1 year ago - 1 comment

#97 - Save and load origin on cache

Issue - State: closed - Opened by abelsiqueira over 1 year ago
Labels: data-pipeline

#96 - Implement kfold function

Pull Request - State: closed - Opened by abelsiqueira over 1 year ago - 1 comment

#95 - add origin tracking

Pull Request - State: closed - Opened by bart1 over 1 year ago - 1 comment

#94 - Keep track of which file generated which graph and/or vice-versa

Issue - State: closed - Opened by abelsiqueira over 1 year ago
Labels: enhancement, data-pipeline

#93 - Changes definition of point of interest and limits the number of POIs

Pull Request - State: closed - Opened by abelsiqueira over 1 year ago - 1 comment

#92 - add the option to calculate centered x y features

Pull Request - State: closed - Opened by bart1 over 1 year ago - 1 comment

#91 - Change POI definition and limit maximum POI per label

Issue - State: closed - Opened by abelsiqueira over 1 year ago
Labels: data-pipeline

#90 - Implement k-fold CV on graphs

Issue - State: closed - Opened by lyashevska over 1 year ago

#89 - Implement leave-one-out CV on polar volumes/file

Issue - State: closed - Opened by lyashevska over 1 year ago - 1 comment

#88 - For classification make sure all points can be labeled

Issue - State: closed - Opened by bart1 almost 2 years ago - 1 comment
Labels: question

#87 - Should `x` and `y` be centered over the POI?

Issue - State: closed - Opened by bart1 almost 2 years ago - 2 comments

#86 - import from single file and pandas

Pull Request - State: closed - Opened by bart1 almost 2 years ago - 6 comments

#85 - Speed improvements to RadarDataset

Pull Request - State: closed - Opened by abelsiqueira almost 2 years ago - 2 comments

#84 - Evaluate the use of multithreading and concurrency

Issue - State: open - Opened by lyashevska almost 2 years ago
Labels: discovery

#83 - Add logging to radar_dataset.py

Issue - State: open - Opened by lyashevska almost 2 years ago
Labels: enhancement

#82 - Add logging to the package

Pull Request - State: closed - Opened by lyashevska almost 2 years ago - 2 comments

#81 - Fix indexing of points of interest in RadarDataset

Pull Request - State: closed - Opened by abelsiqueira almost 2 years ago - 1 comment

#80 - Differentiate number of neighbours and number of nodes

Issue - State: closed - Opened by abelsiqueira almost 2 years ago
Labels: tech-debt

#79 - Test that POI are being selected correctly

Issue - State: closed - Opened by abelsiqueira almost 2 years ago - 1 comment

#78 - Add logging to the package

Issue - State: open - Opened by abelsiqueira almost 2 years ago - 2 comments
Labels: enhancement

#77 - Consider converting from raw data (h5) directly to a format supported by the DB

Issue - State: open - Opened by abelsiqueira almost 2 years ago

#76 - Evaluate PostGIS

Issue - State: closed - Opened by abelsiqueira almost 2 years ago - 2 comments
Labels: discovery

#75 - Evaluate MongoDB

Issue - State: closed - Opened by abelsiqueira almost 2 years ago - 2 comments
Labels: discovery

#74 - Identified slow parts of the code

Issue - State: open - Opened by abelsiqueira almost 2 years ago

#73 - Create RadarDataset from a single file

Issue - State: closed - Opened by abelsiqueira almost 2 years ago - 8 comments
Labels: enhancement

#72 - Evaluate DuckDB

Issue - State: closed - Opened by abelsiqueira almost 2 years ago - 1 comment
Labels: discovery

#71 - Implements reading .csv.gz by RadarDataset and test

Pull Request - State: closed - Opened by abelsiqueira almost 2 years ago - 1 comment

#70 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] almost 2 years ago - 1 comment

#69 - [WIP] Workflow

Pull Request - State: closed - Opened by abelsiqueira almost 2 years ago - 2 comments

#68 - Summary of dataset

Issue - State: open - Opened by bart1 almost 2 years ago

#67 - RadarDataset should read .csv.gz as well as .csv

Issue - State: closed - Opened by abelsiqueira almost 2 years ago - 1 comment
Labels: bug

#66 - Draw a diagram of the pipeline and add to the repo

Issue - State: open - Opened by abelsiqueira almost 2 years ago - 3 comments
Labels: gnn-theory, data-pipeline

#65 - Consider changing from sphinx/read-the-docs to mkdocs/github-pages

Issue - State: open - Opened by abelsiqueira almost 2 years ago
Labels: tech-debt

#64 - Explore the effect of `max_edge_distance`

Issue - State: open - Opened by bart1 almost 2 years ago - 1 comment
Labels: gnn-theory, data-pipeline, discovery

#63 - Iteratively increase `max_distance` in radar_dataset

Issue - State: closed - Opened by bart1 almost 2 years ago - 5 comments
Labels: question

#62 - Reduce number of points of interest for testing

Issue - State: closed - Opened by bart1 almost 2 years ago - 2 comments
Labels: discovery

#61 - Add prospector and isort to pre-commit.ci skip, since they are being run already

Pull Request - State: closed - Opened by abelsiqueira almost 2 years ago - 2 comments

#60 - Investigate loading large amounts of annotated data

Issue - State: open - Opened by abelsiqueira almost 2 years ago - 1 comment
Labels: data-pipeline, discovery

#59 - Build GNN models with annotated data

Issue - State: open - Opened by abelsiqueira almost 2 years ago - 1 comment
Labels: discovery

#57 - Add linter/formatter for yaml and markdown

Issue - State: open - Opened by abelsiqueira almost 2 years ago
Labels: tech-debt

#55 - Better separate tests in test_radar_dataset

Issue - State: open - Opened by abelsiqueira almost 2 years ago
Labels: tech-debt

#54 - Add skip to pre-commit.ci

Issue - State: closed - Opened by abelsiqueira almost 2 years ago - 1 comment

#52 - Check whether `tmp_path` in test_gnn_model and test_radar_dataset are the same

Issue - State: closed - Opened by lyashevska almost 2 years ago - 2 comments

#51 - Use dataset fixture in other test

Issue - State: open - Opened by lyashevska almost 2 years ago
Labels: tech-debt

#50 - Consider adding type hints everywhere

Issue - State: open - Opened by abelsiqueira almost 2 years ago
Labels: tech-debt

#49 - Check whether nodes can be aggregated

Issue - State: open - Opened by lyashevska almost 2 years ago - 1 comment
Labels: data-pipeline, discovery

#48 - Check if random subsampling of nodes is feasible

Issue - State: closed - Opened by lyashevska almost 2 years ago - 4 comments
Labels: gnn-theory, data-pipeline, discovery

#46 - Generate large number of graphs with smaller number of nodes

Issue - State: open - Opened by lyashevska almost 2 years ago - 3 comments
Labels: gnn-theory, data-pipeline, discovery

#45 - Check whether all graphs need to have same number of nodes

Issue - State: open - Opened by lyashevska almost 2 years ago - 2 comments
Labels: gnn-theory

#44 - Create edge if distance is less than r

Issue - State: closed - Opened by lyashevska almost 2 years ago - 1 comment

#42 - Implement a better way to fill missing data in the features

Issue - State: open - Opened by abelsiqueira almost 2 years ago
Labels: data-pipeline

#35 - Add user documentation

Issue - State: open - Opened by lyashevska almost 2 years ago
Labels: tech-debt

#33 - Test GNN class with Radar dataset class

Issue - State: closed - Opened by lyashevska almost 2 years ago - 2 comments

#32 - Add radar dataset class

Pull Request - State: closed - Opened by lyashevska almost 2 years ago - 3 comments

#24 - First release and related tasks

Issue - State: open - Opened by abelsiqueira almost 2 years ago
Labels: tech-debt

GitHub / point-cloud-radar/bird-cloud-gnn issues and pull requests