Ecosyste.ms: Issues

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GitHub / pnnl/leapr issues and pull requests

#42 - Revert "Fix enrichment in groups sohi"

Pull Request - State: closed - Opened by sgosline almost 2 years ago

#41 - Fix enrichment in groups sohi

Pull Request - State: closed - Opened by HarkiratSohi almost 2 years ago

#40 - Update enrichment_in_groups.R

Pull Request - State: closed - Opened by CamiloPosso about 2 years ago

#35 - Fix Enrichment_in_sets - (Bug)

Issue - State: open - Opened by jjacobson95 over 2 years ago

#32 - Primary vs Secondary column update - (Documentation)

Issue - State: open - Opened by jjacobson95 over 2 years ago

#31 - Create a Experiment Flowchart - (Documentation)

Issue - State: open - Opened by jjacobson95 over 2 years ago

#30 - Build in t-test to Enrichment in Order - (Enhancement)

Issue - State: open - Opened by jjacobson95 over 2 years ago

#29 - Enhanced handling of multi-omics results

Issue - State: open - Opened by biodataganache over 2 years ago
Labels: enhancement

#28 - Fixed min_p_threshold in enrichment_in_abundance

Pull Request - State: closed - Opened by muktapalshikar over 2 years ago

#27 - Add n barplot visualization for terms/pathways

Issue - State: open - Opened by sgosline over 2 years ago

#26 - vignette error/warning messages

Issue - State: closed - Opened by Itallia about 3 years ago - 1 comment

#25 - Bacterial pathway database

Issue - State: open - Opened by biodataganache about 3 years ago
Labels: enhancement

#24 - Pathway details

Issue - State: open - Opened by biodataganache over 3 years ago

#23 - Empirical p-value calculation

Issue - State: open - Opened by biodataganache over 3 years ago

#22 - updated kinase substrates

Pull Request - State: closed - Opened by sgosline almost 4 years ago - 1 comment

#21 - latest trelliscopejs rmd

Pull Request - State: closed - Opened by godi678 about 4 years ago

#20 - added rough draft of trelliscopejs function

Pull Request - State: closed - Opened by godi678 about 4 years ago

#19 - Documentation not available in Rstudio

Issue - State: closed - Opened by biodataganache about 4 years ago

#18 - Cluster_enrichment doesn't work as intended

Issue - State: closed - Opened by sgosline about 4 years ago - 1 comment

#17 - Updated vignette, altered arguments to cluster

Pull Request - State: closed - Opened by sgosline about 4 years ago

#16 - Vignette, when built upon install, doesn't include code

Issue - State: closed - Opened by sgosline about 4 years ago

#15 - Add multi-omics data to vignette

Issue - State: closed - Opened by biodataganache about 4 years ago - 1 comment

#14 - Update vignette to include phosphoproteomics examples

Issue - State: closed - Opened by biodataganache about 4 years ago - 1 comment

#12 - attempted fix for README

Pull Request - State: closed - Opened by sgosline about 4 years ago - 1 comment

#11 - Vignette loading not working

Issue - State: closed - Opened by biodataganache about 4 years ago - 1 comment
Labels: bug

#10 - Update inline documentation for leapR function

Issue - State: closed - Opened by biodataganache about 4 years ago - 1 comment

#9 - Sara doc merges

Pull Request - State: closed - Opened by sgosline about 4 years ago

#8 - added data.R

Pull Request - State: closed - Opened by sgosline about 4 years ago

#7 - Update background in manuscript

Issue - State: closed - Opened by biodataganache about 4 years ago - 1 comment

#6 - Update manuscript

Issue - State: closed - Opened by biodataganache about 4 years ago - 1 comment

#5 - Update inline documentation

Issue - State: closed - Opened by sgosline about 4 years ago - 1 comment

#4 - Update vignette to more clearly describe what people can do with data

Issue - State: closed - Opened by sgosline about 4 years ago - 2 comments
Labels: documentation

#3 - Update README to tell people how to install

Issue - State: closed - Opened by sgosline about 4 years ago - 1 comment

#2 - Rename wrapper script to leapR

Issue - State: closed - Opened by sgosline about 4 years ago - 1 comment

#1 - updated documentation removed excess files

Pull Request - State: closed - Opened by sgosline about 4 years ago