pmlmodelling/ersem issues and pull requests

#140 - ersem.com expired

Issue - State: open - Opened by jornbr 5 months ago

#139 - Adding minimum and maximum values to get_parameters in ERSEM

Pull Request - State: closed - Opened by wathen 6 months ago

#138 - Invalid options

Issue - State: closed - Opened by wathen 6 months ago

#137 - Merge from private

Pull Request - State: closed - Opened by wathen 7 months ago

#136 - changed default alkalinity to prognostic in main setup only

Pull Request - State: closed - Opened by glessin 8 months ago - 2 comments

#136 - changed default alkalinity to prognostic in main setup only

Pull Request - State: open - Opened by glessin 8 months ago

#135 - Remove unused params in oxygen module for iswO2

Pull Request - State: closed - Opened by wathen 8 months ago - 4 comments

#134 - Adding `fcheck=all` to tests

Pull Request - State: closed - Opened by wathen 8 months ago - 1 comment

#133 - Adding `fcheck=all` to test

Pull Request - State: closed - Opened by wathen 8 months ago

#133 - Adding `fcheck=all` to test

Pull Request - State: closed - Opened by wathen 8 months ago

#132 - Fixing PON and POP units

Pull Request - State: closed - Opened by wathen 8 months ago - 1 comment

#131 - Stopping sinking rate 'flux' term from being negative

Pull Request - State: closed - Opened by wathen 8 months ago - 2 comments

#130 - Fixing colourmap in pyfabm tutorial

Pull Request - State: closed - Opened by wathen 9 months ago

#129 - pyfabm tutoriail failing

Issue - State: closed - Opened by wathen 9 months ago
Labels: bug

#129 - pyfabm tutoriail failing

Issue - State: closed - Opened by wathen 9 months ago
Labels: bug

#128 - Updating read the docs yml file for buld os

Pull Request - State: closed - Opened by wathen 9 months ago

#127 - Fixing github tests badge in readme

Pull Request - State: open - Opened by wathen 9 months ago

#127 - Fixing github tests badge in readme

Pull Request - State: closed - Opened by wathen 9 months ago

#126 - Docs failing to build

Issue - State: closed - Opened by wathen 9 months ago
Labels: bug, documentation

#126 - Docs failing to build

Issue - State: closed - Opened by wathen 9 months ago
Labels: bug, documentation

#125 - Test badge

Issue - State: closed - Opened by wathen 9 months ago
Labels: bug

#124 - replace add_dependencies with target_link_libraries to support parallel ninja builds

Pull Request - State: closed - Opened by jornbr 9 months ago - 1 comment

#123 - Updating trigged actions in yml file

Pull Request - State: closed - Opened by wathen 9 months ago - 1 comment

#122 - Github actions not running

Issue - State: closed - Opened by wathen 9 months ago - 1 comment
Labels: bug

#121 - Change rm parameter name in primary_producer.F90

Issue - State: closed - Opened by hpowley 12 months ago - 2 comments

#120 - Protect against positive (upwards) deposition values

Issue - State: closed - Opened by hpowley 12 months ago

#119 - Prognostic alkalinity as default option

Issue - State: closed - Opened by glessin about 1 year ago
Labels: enhancement

#118 - Add calculation of euphotic layer depth diagnostic

Issue - State: open - Opened by glessin about 1 year ago

#117 - Updating gotm version in tests

Pull Request - State: closed - Opened by wathen about 1 year ago

#116 - GOTM version

Issue - State: closed - Opened by wathen about 1 year ago

#115 - added initialization to all variables

Pull Request - State: closed - Opened by glessin over 1 year ago

#114 - Methane

Issue - State: closed - Opened by glessin over 1 year ago - 1 comment
Labels: enhancement

#113 - correct background value composition in fabm.yaml

Issue - State: open - Opened by glessin over 1 year ago

#112 - bacteria uptake of POM incorrect units

Issue - State: closed - Opened by r-millington over 1 year ago

#111 - removed double declaration and assignment

Pull Request - State: closed - Opened by yutiPML over 1 year ago - 1 comment

#110 - double diagnostic in nitrification.F90

Issue - State: closed - Opened by yutiPML over 1 year ago
Labels: invalid

#109 - added excretion to diagnostic of flux from benthic fauna to POC

Pull Request - State: closed - Opened by r-millington over 1 year ago

#108 - benthic fauna contribution to POC incomplete in diagnostic

Issue - State: closed - Opened by r-millington over 1 year ago

#107 - added diagnostic for benthic burial flux

Pull Request - State: closed - Opened by r-millington over 1 year ago

#106 - burial_flux missing as diagnostic

Issue - State: closed - Opened by r-millington over 1 year ago
Labels: good first issue

#105 - Merge private to public

Pull Request - State: closed - Opened by wathen over 1 year ago

#104 - added minimum value to state variable registration except when non-ne…

Pull Request - State: closed - Opened by yutiPML almost 2 years ago

#103 - benthic dissolved matter without minimum

Issue - State: closed - Opened by yutiPML almost 2 years ago
Labels: bug

#102 - fixes oxygen consumption if denit=T

Pull Request - State: closed - Opened by glessin about 2 years ago

#101 - fix oxygen consumption if denit = True

Issue - State: closed - Opened by glessin about 2 years ago
Labels: bug

#100 - update configuration file names in line with version number

Issue - State: closed - Opened by glessin about 2 years ago - 2 comments

#99 - Test cases have require_initialization set but lack some initial values

Issue - State: closed - Opened by jornbr about 2 years ago - 2 comments

#98 - moved getting om_cal only if ISWCAL not equal to 0

Pull Request - State: open - Opened by yutiPML about 2 years ago - 1 comment
Labels: bug

#97 - Update troubleshooting link in GOTM installation instructions

Pull Request - State: closed - Opened by wathen about 2 years ago

#96 - Broken `tips and tricks/troubleshooting` link in docs

Issue - State: closed - Opened by wathen about 2 years ago
Labels: bug, documentation

#95 - code breaks if iswcal=0

Issue - State: open - Opened by yutiPML about 2 years ago
Labels: bug

#94 - compile with -fcheck=all

Issue - State: closed - Opened by yutiPML about 2 years ago

#93 - Typos/formatting errors on ERSEM areas model page

Issue - State: closed - Opened by hpowley over 2 years ago - 1 comment

#92 - Move support docs to readme

Pull Request - State: closed - Opened by wathen over 2 years ago

#91 - ERSEM support

Issue - State: closed - Opened by wathen over 2 years ago
Labels: documentation

#90 - Adding PR template and issue closing docs

Pull Request - State: closed - Opened by wathen over 2 years ago - 1 comment

#89 - PR template

Issue - State: closed - Opened by wathen over 2 years ago - 1 comment

#88 - Merge dev to public

Pull Request - State: closed - Opened by wathen over 2 years ago

#87 - units of total alkalinity and bioalkalinity have been changed from um…

Pull Request - State: closed - Opened by yutiPML over 2 years ago - 1 comment

#86 - 73 new alkalinity formulation

Pull Request - State: closed - Opened by yutiPML over 2 years ago - 1 comment

#85 - Fix bug in pyfabm plot by switching axes

Pull Request - State: closed - Opened by hpowley over 2 years ago - 2 comments

#84 - added option to impose a first order kinetic decay to the pelagic bas…

Pull Request - State: closed - Opened by yutiPML over 2 years ago

#83 - adding first order kinetics to pelagic_base

Issue - State: closed - Opened by yutiPML over 2 years ago - 1 comment
Labels: enhancement

#82 - 70 nemo1d

Pull Request - State: closed - Opened by glessin over 2 years ago - 1 comment
Labels: documentation

#81 - Fixing profile test args

Pull Request - State: closed - Opened by wathen over 2 years ago

#80 - Profiling tests are failing

Issue - State: closed - Opened by wathen over 2 years ago
Labels: bug

#79 - Updating github actions branch env

Pull Request - State: closed - Opened by wathen over 2 years ago - 1 comment

#78 - Github actions checking out wrong branch

Issue - State: closed - Opened by wathen over 2 years ago
Labels: bug

#77 - fixed bgeff diagnostics

Pull Request - State: closed - Opened by glessin over 2 years ago

#76 - 63-bge

Pull Request - State: closed - Opened by glessin over 2 years ago

#75 - Terrestrial DOC

Issue - State: open - Opened by glessin over 2 years ago - 1 comment
Labels: enhancement

#74 - Benthic iron

Issue - State: open - Opened by glessin over 2 years ago - 1 comment
Labels: enhancement

#73 - Merge new alkalinity formulation

Issue - State: closed - Opened by glessin over 2 years ago
Labels: enhancement

#72 - Nitrous oxide

Issue - State: closed - Opened by glessin over 2 years ago - 1 comment
Labels: enhancement

#71 - Pelagic denitrification

Issue - State: closed - Opened by glessin over 2 years ago - 1 comment
Labels: enhancement

#70 - NEMO-ERSEM 1D tutorial

Issue - State: closed - Opened by glessin over 2 years ago - 2 comments
Labels: documentation

#69 - Adding ERSEM workflow docs

Pull Request - State: closed - Opened by wathen over 2 years ago

#68 - Error in plot in pyfabm tutorial

Issue - State: closed - Opened by hpowley over 2 years ago - 1 comment
Labels: bug

#67 - Merging ERSEM-edge

Pull Request - State: closed - Opened by wathen almost 3 years ago

#66 - Fixing tests

Pull Request - State: closed - Opened by wathen almost 3 years ago

#65 - `fabm0d` and profiling test failing

Issue - State: closed - Opened by wathen almost 3 years ago - 1 comment
Labels: bug

#64 - NEMO-ERSEM tutorial

Pull Request - State: closed - Opened by wathen almost 3 years ago - 6 comments

#63 - BGE in bacteria_docdyn.F90

Issue - State: closed - Opened by glessin almost 3 years ago - 2 comments
Labels: question

#62 - Add a description of workflow for feature development and merging to the main code

Issue - State: closed - Opened by glessin almost 3 years ago
Labels: documentation

#61 - Fixing git clone in docs

Pull Request - State: closed - Opened by wathen about 3 years ago

#60 - Docs not rendering FVCOM files correctly

Issue - State: closed - Opened by wathen about 3 years ago

#59 - NEMO tutorial

Issue - State: closed - Opened by wathen about 3 years ago - 1 comment

#58 - Skipping timing tests

Pull Request - State: closed - Opened by wathen over 3 years ago

#57 - Make timing test optional

Issue - State: closed - Opened by wathen over 3 years ago

#56 - Adding basic profiling tests

Pull Request - State: closed - Opened by wathen over 3 years ago

#55 - Basic profiling tests

Issue - State: closed - Opened by wathen over 3 years ago

#54 - Adding basic FVCOM example

Pull Request - State: closed - Opened by wathen over 3 years ago - 2 comments

#53 - Checking for invalid switch selections?

Issue - State: open - Opened by jimc101 over 3 years ago - 2 comments

#52 - Optimisation recommendation - order of switches

Issue - State: open - Opened by jimc101 over 3 years ago

#51 - The description of the oxygen parameter iswO2 is incorrect

Issue - State: closed - Opened by jimc101 over 3 years ago

#50 - FVCOM example

Issue - State: closed - Opened by wathen over 3 years ago
Labels: documentation

#49 - Adding basic gotm state var tests

Pull Request - State: closed - Opened by wathen over 3 years ago - 2 comments

#48 - `zenith_angle.F90` docstring

Issue - State: open - Opened by wathen over 3 years ago
Labels: documentation

#47 - `shared.F90` docstring

Issue - State: open - Opened by wathen over 3 years ago
Labels: documentation

#46 - `primary_producer.F90` docstring

Issue - State: open - Opened by wathen over 3 years ago
Labels: documentation

GitHub / pmlmodelling/ersem issues and pull requests