Ecosyste.ms: Issues

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GitHub / plger/pipecomp issues and pull requests

#51 - Prepare for upcoming Seurat v5 release

Issue - State: open - Opened by saketkc about 1 year ago

#50 - Metadata names

Issue - State: closed - Opened by cindyfang70 almost 4 years ago - 7 comments

#49 - Issue with doubletmethod in runPipeline()

Issue - State: closed - Opened by cindyfang70 almost 4 years ago - 3 comments

#48 - issue with wrapper add_meta()

Issue - State: closed - Opened by drhochbaum about 4 years ago - 1 comment

#47 - porting master changes to the R 3.6 version

Pull Request - State: closed - Opened by plger about 4 years ago

#46 - Re-add .dsMergeResults

Pull Request - State: closed - Opened by ansonrel about 4 years ago

#45 - Create LICENSE

Pull Request - State: closed - Opened by plger about 4 years ago

#44 - Bugfix that prevented the vignette to be built

Pull Request - State: closed - Opened by ansonrel over 4 years ago

#43 - port back master to devel

Pull Request - State: closed - Opened by plger over 4 years ago

#42 - fixed missing import, updated news

Pull Request - State: closed - Opened by plger over 4 years ago

#41 - Porting devel changes to master

Pull Request - State: closed - Opened by plger over 4 years ago

#40 - Update scVI wrappers and add latent space model

Pull Request - State: closed - Opened by ansonrel over 4 years ago

#39 - added overall plot function for scrna_pipeline

Pull Request - State: closed - Opened by plger over 4 years ago

#38 - various bug fixes with more recent scater/seurat/dplyr versions

Pull Request - State: closed - Opened by plger over 4 years ago

#37 - version bump

Pull Request - State: closed - Opened by plger over 4 years ago

#36 - version bump

Pull Request - State: closed - Opened by plger over 4 years ago

#35 - port master changes to 3.6

Pull Request - State: closed - Opened by plger over 4 years ago

#34 - version bump

Pull Request - State: closed - Opened by plger over 4 years ago

#33 - Devel

Pull Request - State: closed - Opened by plger over 4 years ago

#32 - Devel

Pull Request - State: closed - Opened by plger over 4 years ago

#31 - port master changes to devel

Pull Request - State: closed - Opened by plger over 4 years ago

#30 - bioctyle changes

Pull Request - State: closed - Opened by plger over 4 years ago

#29 - port master changes to R3.6 version

Pull Request - State: closed - Opened by plger over 4 years ago

#28 - Devel

Pull Request - State: closed - Opened by plger over 4 years ago

#27 - enabled splitting by expression in heatmaps

Pull Request - State: closed - Opened by plger over 4 years ago

#26 - porting master changes to devel

Pull Request - State: closed - Opened by plger over 4 years ago

#25 - How to install with R 3.6

Issue - State: closed - Opened by yuGithuuub over 4 years ago - 2 comments

#24 - Merge pull request #23 from plger/master

Pull Request - State: closed - Opened by plger over 4 years ago

#23 - port new documentation to devel

Pull Request - State: closed - Opened by plger over 4 years ago

#22 - Merge pull request #21 from plger/master

Pull Request - State: closed - Opened by plger over 4 years ago

#21 - port master changes to devel

Pull Request - State: closed - Opened by plger over 4 years ago

#20 - Devel

Pull Request - State: closed - Opened by plger over 4 years ago

#19 - Misc fixes.

Pull Request - State: closed - Opened by ansonrel over 4 years ago

#18 - fixed non-imported dependencies, added documentation

Pull Request - State: closed - Opened by plger over 4 years ago

#17 - Devel

Pull Request - State: closed - Opened by plger over 4 years ago

#16 - Solve Bioc warnings

Pull Request - State: closed - Opened by ansonrel over 4 years ago

#15 - Devel

Pull Request - State: closed - Opened by plger over 4 years ago

#14 - Add some infos to the documentation of `srna_pipeline` and `runPipeline`

Pull Request - State: closed - Opened by ansonrel over 4 years ago

#13 - Devel

Pull Request - State: closed - Opened by plger over 4 years ago

#12 - Devel

Pull Request - State: closed - Opened by ansonrel over 4 years ago

#11 - fixed aggregateDR bug with single dimensionality

Pull Request - State: closed - Opened by plger over 4 years ago

#10 - Adapt `scrna_alternatives` and `scrna_pipeline` to `sce` class

Pull Request - State: closed - Opened by ansonrel over 4 years ago

#9 - Devel

Pull Request - State: closed - Opened by plger over 4 years ago

#8 - corrected "@" accessions in seurat objects

Pull Request - State: closed - Opened by ansonrel over 4 years ago

#7 - correct reducedDim call for new scater version

Pull Request - State: closed - Opened by ansonrel almost 5 years ago

#6 - @reducedDims not found in scater>1.14.5

Issue - State: closed - Opened by ansonrel almost 5 years ago - 2 comments

#5 - 'unknwon nbcolors' in scrna_evalPlot_clustAtTrueK

Issue - State: closed - Opened by ansonrel almost 5 years ago - 2 comments

#4 - 'incorrect number of dimensions' in scrna_evalPlot_DR

Issue - State: closed - Opened by ansonrel almost 5 years ago - 6 comments

#3 - correct imputation wrappers sourcing

Pull Request - State: closed - Opened by ansonrel almost 5 years ago

#2 - broken sourcing paths for imputation scripts

Issue - State: closed - Opened by plger almost 5 years ago

#1 - add imputation wrapper/ script

Pull Request - State: closed - Opened by ansonrel almost 5 years ago