Ecosyste.ms: Issues

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GitHub / plantinformatics/pretzel-input-generator issues and pull requests

#38 - Features appearing multiple times in generated JSON

Issue - State: open - Opened by rsuchecki almost 4 years ago

#37 - Features orientations

Issue - State: open - Opened by rsuchecki about 4 years ago

#36 - Confusing data set version labels

Issue - State: open - Opened by rsuchecki over 4 years ago

#35 - Consistent namespace for placed markers datasets

Issue - State: closed - Opened by rsuchecki almost 5 years ago

#34 - Feature/streamline inputs

Pull Request - State: closed - Opened by rsuchecki about 5 years ago

#33 - Add input config validation

Issue - State: open - Opened by rsuchecki about 5 years ago

#32 - How to generate the aliase file with local files?

Issue - State: closed - Opened by xiaoaozqd about 5 years ago - 4 comments

#31 - Failed with multiple errors, see `details` for more information.

Issue - State: closed - Opened by xiaoaozqd about 5 years ago - 3 comments

#30 - Meta should include tag/type field

Issue - State: closed - Opened by rsuchecki about 5 years ago
Labels: enhancement

#28 - Indicate if marker genetically mapped

Issue - State: open - Opened by rsuchecki over 5 years ago

#27 - Earlier Chinese Spring assemblies on Ref 1.0 and 2.0

Issue - State: open - Opened by rsuchecki over 5 years ago

#26 - 90k markers on all genomes

Issue - State: closed - Opened by rsuchecki over 5 years ago - 1 comment

#25 - Redundant alisases

Issue - State: closed - Opened by rsuchecki over 5 years ago - 1 comment
Labels: question

#24 - Allow alternative annotations for a given genome

Issue - State: closed - Opened by rsuchecki over 5 years ago - 1 comment

#23 - Generated results summary

Issue - State: closed - Opened by rsuchecki over 5 years ago - 1 comment

#22 - Choose longest transcript if no indication of representative

Issue - State: closed - Opened by rsuchecki almost 6 years ago - 1 comment

#21 - Dynamic resource scaling

Issue - State: open - Opened by rsuchecki almost 6 years ago
Labels: enhancement

#20 - Feature/busco

Pull Request - State: closed - Opened by rsuchecki about 6 years ago

#19 - Unplaced scaffolds in JSON

Issue - State: closed - Opened by rsuchecki about 6 years ago - 1 comment

#18 - More species, more data

Issue - State: closed - Opened by rsuchecki about 6 years ago - 4 comments

#17 - Add CI

Issue - State: closed - Opened by rsuchecki about 6 years ago - 1 comment

#16 - Generated data sets should be public by default?

Issue - State: closed - Opened by rsuchecki about 6 years ago - 1 comment

#15 - Consistently use `value` property name in place of `range`

Issue - State: closed - Opened by rsuchecki over 6 years ago - 1 comment

#14 - test profiles

Issue - State: closed - Opened by rsuchecki over 6 years ago - 1 comment

#13 - reduce number of aliases until filtering can be appiled by pretzel

Issue - State: closed - Opened by rsuchecki over 6 years ago - 1 comment

#13 - reduce number of aliases until filtering can be appiled by pretzel

Issue - State: closed - Opened by rsuchecki over 6 years ago - 1 comment

#12 - Separate High Confidence from Low Confidence genes

Issue - State: closed - Opened by rsuchecki over 6 years ago - 2 comments

#12 - Separate High Confidence from Low Confidence genes

Issue - State: closed - Opened by rsuchecki over 6 years ago - 2 comments

#11 - off by one if pep seq terminated with asterisk

Issue - State: open - Opened by rsuchecki over 6 years ago
Labels: bug, low priority

#11 - off by one if pep seq terminated with asterisk

Issue - State: open - Opened by rsuchecki over 6 years ago
Labels: bug, low priority

#10 - compress aliases JSON, update curl instructions

Issue - State: closed - Opened by rsuchecki over 6 years ago - 1 comment

#9 - Alias evidence

Issue - State: closed - Opened by rsuchecki over 6 years ago - 3 comments

#9 - Alias evidence

Issue - State: closed - Opened by rsuchecki over 6 years ago - 3 comments

#8 - Ensembl plants input specification

Issue - State: closed - Opened by rsuchecki over 6 years ago

#7 - More metadata

Issue - State: closed - Opened by rsuchecki over 6 years ago - 3 comments

#6 - Update to ensembl plants release 40

Issue - State: closed - Opened by rsuchecki over 6 years ago - 2 comments

#5 - JSON generation update

Issue - State: closed - Opened by rsuchecki over 6 years ago - 1 comment

#5 - JSON generation update

Issue - State: closed - Opened by rsuchecki over 6 years ago - 1 comment

#4 - A results alisaes file overwritten if multiple subgenomes

Issue - State: closed - Opened by rsuchecki over 6 years ago - 1 comment
Labels: bug

#4 - A results alisaes file overwritten if multiple subgenomes

Issue - State: closed - Opened by rsuchecki over 6 years ago - 1 comment
Labels: bug

#3 - generated JSON does not always produce links in pretzel (some datasets)

Issue - State: closed - Opened by rsuchecki over 6 years ago
Labels: bug

#3 - generated JSON does not always produce links in pretzel (some datasets)

Issue - State: closed - Opened by rsuchecki over 6 years ago
Labels: bug

#2 - flexible local or remote input

Issue - State: closed - Opened by rsuchecki over 6 years ago - 1 comment
Labels: enhancement

#1 - more links to be generated from protein alignments, specify evidence

Issue - State: closed - Opened by rsuchecki over 6 years ago - 3 comments
Labels: enhancement

#1 - more links to be generated from protein alignments, specify evidence

Issue - State: closed - Opened by rsuchecki over 6 years ago - 3 comments
Labels: enhancement