planteome/plant-experimental-conditions-ontology issues and pull requests

#138 - PECO not being processed by OLS

Issue - State: closed - Opened by haideriqbal 6 months ago - 2 comments

#137 - [BUG] purls don't resolve (correctly)

Issue - State: open - Opened by Hannah-Doerpholz 7 months ago - 1 comment

#136 - make release

Pull Request - State: closed - Opened by marieALaporte about 1 year ago

#135 - Issue 130 to add axioms for chemicals

Pull Request - State: closed - Opened by cooperl09 about 1 year ago

#134 - New Term Request: Knop's solution

Issue - State: closed - Opened by kdumschott about 1 year ago - 1 comment

#133 - Update to Plant Environment Ontology on identifiers.org

Issue - State: closed - Opened by renatocjn almost 2 years ago - 2 comments

#132 - Request for less specific 'stratification exposure' definition or additional subclass of 'physical plant exposure'

Issue - State: open - Opened by kristenpeach almost 2 years ago - 3 comments

#131 - Map part_of to RO relation in OWL parser.

Pull Request - State: closed - Opened by balhoff about 2 years ago

#130 - Connecting the plant nutrient exposure subclasses to the ChEBI chemicals / atoms they reference?

Issue - State: closed - Opened by ddooley about 2 years ago

#129 - Obtain updated owl file of the PECO ontology

Issue - State: closed - Opened by baptisteImbert about 2 years ago - 1 comment

#128 - Add aeroponic term

Issue - State: closed - Opened by baptisteImbert about 2 years ago - 1 comment

#127 - Update references for curators

Pull Request - State: closed - Opened by cthoyt over 2 years ago - 1 comment

#126 - Standardize NCBITaxon CURIEs

Pull Request - State: closed - Opened by cthoyt over 2 years ago

#125 - Create LICENSE

Pull Request - State: closed - Opened by cthoyt over 2 years ago

#124 - Add obofoundry topic to repo metadata

Issue - State: closed - Opened by cthoyt over 3 years ago - 1 comment

#123 - NTR Zymoseptoria tritici exposure

Issue - State: closed - Opened by richardostler almost 4 years ago - 1 comment

#122 - make release

Pull Request - State: closed - Opened by marieALaporte over 4 years ago - 1 comment

#121 - Soil Environment

Issue - State: open - Opened by cooperl09 about 5 years ago

#120 - NTR: Rhizobium leguminosarum exposure

Issue - State: closed - Opened by richardostler about 5 years ago - 1 comment

#119 - NTR: liming exposure

Issue - State: closed - Opened by richardostler about 5 years ago - 2 comments

#118 - Using PECO vs AGRO for field experiment treatments

Issue - State: open - Opened by richardostler over 5 years ago - 2 comments

#117 - NTR: rapeseed meal exposure

Issue - State: closed - Opened by richardostler over 5 years ago - 3 comments

#116 - NTR: green manure exposure

Issue - State: closed - Opened by richardostler over 5 years ago - 2 comments

#115 - NTR: castor meal exposure

Issue - State: closed - Opened by richardostler over 5 years ago - 5 comments

#114 - Fix patterns to uncomment name/definition fields in pattern files

Pull Request - State: closed - Opened by DoctorBud almost 6 years ago

#113 - new term: nematicide exposure

Issue - State: closed - Opened by richardostler about 6 years ago - 2 comments

#112 - new term: potassium fertilizer exposure

Issue - State: closed - Opened by richardostler about 6 years ago - 2 comments

#111 - Do not trigger rebuild of mirror or imports when source changes

Pull Request - State: closed - Opened by cmungall over 6 years ago

#110 - adding docker and updating the travis file #109

Pull Request - State: closed - Opened by marieALaporte over 6 years ago - 1 comment

#109 - Update travis.yml to latest odk version

Issue - State: closed - Opened by cmungall over 6 years ago - 3 comments

#108 - purl redirection failing

Issue - State: closed - Opened by cooperl09 over 6 years ago - 1 comment

#107 - renaming treatment to exposure

Pull Request - State: closed - Opened by cmungall over 6 years ago - 1 comment

#106 - [WIP] Add imports to import modules and patterns

Pull Request - State: closed - Opened by cmungall almost 7 years ago - 2 comments

#105 - Repo reorganization

Pull Request - State: closed - Opened by marieALaporte about 7 years ago - 1 comment

#104 - Repo reorganization

Pull Request - State: closed - Opened by marieALaporte about 7 years ago

#103 - Repo reorganization

Pull Request - State: closed - Opened by marieALaporte about 7 years ago

#102 - EO term request: paper growth medium?

Issue - State: closed - Opened by elsadebecker over 7 years ago - 2 comments

#101 - terms to add the the exposure-x.csv files

Issue - State: open - Opened by marieALaporte over 7 years ago - 2 comments

#100 - Travis checks need to be added to the repo

Issue - State: open - Opened by marieALaporte over 7 years ago - 3 comments

#99 - add treatment at the end of every treatment classes except the regimen ones

Pull Request - State: closed - Opened by marieALaporte over 7 years ago - 3 comments

#98 - CHEBI roles

Issue - State: open - Opened by marieALaporte over 7 years ago - 4 comments

#98 - CHEBI roles

Issue - State: open - Opened by marieALaporte over 7 years ago - 5 comments

#97 - Add logical definitions for seasons

Issue - State: open - Opened by cmungall over 7 years ago

#97 - Add logical definitions for seasons

Issue - State: open - Opened by cmungall over 7 years ago

#96 - Ready to merge: Lexically derived csvs

Pull Request - State: closed - Opened by cmungall over 7 years ago

#95 - Change ID space to PECO

Issue - State: open - Opened by cmungall over 7 years ago - 2 comments

#94 - Renaming upper level: "plant exposure" from "plant treatment"

Issue - State: open - Opened by austinmeier over 7 years ago - 7 comments

#93 - Proposed design patterns: for study type and it's children

Issue - State: open - Opened by cmungall over 7 years ago - 4 comments

#92 - Adding design patterns to EO

Pull Request - State: closed - Opened by cmungall over 7 years ago - 6 comments

#92 - Adding design patterns to EO

Pull Request - State: closed - Opened by cmungall over 7 years ago - 6 comments

#91 - append treatment to the abiotic plant treatment subclasses

Pull Request - State: closed - Opened by marieALaporte over 7 years ago

#90 - Need terms for rooftop green houses gardens so as for shipping container garden and greenhouse.

Issue - State: closed - Opened by cooperl09 about 8 years ago
Labels: Request: New ontology term

#89 - Align plant environmental conditions to Agrovoc

Issue - State: open - Opened by cmungall over 8 years ago

#88 - EO term for "untreated Control" in osmotic stress RNA seq expt

Issue - State: closed - Opened by planteome-user over 10 years ago - 5 comments
Labels: sourceforge, Plant Treatment

#87 - Terms for PEG and NaOH treatments

Issue - State: closed - Opened by planteome-user over 10 years ago - 6 comments
Labels: sourceforge, low priority, Plant Treatment, new terms

#86 - water environment (EO:0007198)

Issue - State: closed - Opened by planteome-user almost 11 years ago
Labels: sourceforge, Plant Treatment, high priority

#85 - gaseous plant treatment (EO:0007023) and child terms

Issue - State: closed - Opened by planteome-user almost 11 years ago
Labels: sourceforge, Plant Treatment, high priority

#84 - plant nutrient treatment (EO:0007241) and child terms

Issue - State: closed - Opened by planteome-user almost 11 years ago
Labels: sourceforge, Plant Treatment, high priority

#83 - seasonal environment (EO:0007027) and child terms

Issue - State: closed - Opened by planteome-user almost 11 years ago - 1 comment
Labels: sourceforge, Plant Treatment, high priority

#82 - unknown treatment (EO:0007403)

Issue - State: closed - Opened by planteome-user almost 11 years ago
Labels: sourceforge, Plant Treatment, high priority

#81 - plant growth medium (EO:0007147)

Issue - State: closed - Opened by planteome-user almost 11 years ago
Labels: sourceforge, Plant Treatment, high priority

#80 - study type (EO:0007231) and child terms

Issue - State: open - Opened by planteome-user almost 11 years ago
Labels: sourceforge, high priority, Study Type

#80 - study type (EO:0007231) and child terms

Issue - State: open - Opened by planteome-user almost 11 years ago
Labels: sourceforge, high priority, Study Type

#79 - ecological environment (EO:0007064)

Issue - State: open - Opened by planteome-user almost 11 years ago
Labels: sourceforge, Plant Treatment, high priority

#78 - biotic plant treatment (EO:0007357)

Issue - State: closed - Opened by planteome-user almost 11 years ago
Labels: sourceforge, Plant Treatment, revised name and definition

#77 - physical treatment (EO:0007316)

Issue - State: closed - Opened by planteome-user almost 11 years ago
Labels: sourceforge, Plant Treatment, high priority

#76 - salt treatment and children

Issue - State: closed - Opened by planteome-user almost 11 years ago
Labels: sourceforge, Plant Treatment

#75 - benzothiadiazole treatment

Issue - State: closed - Opened by planteome-user almost 11 years ago
Labels: sourceforge, Plant Treatment

#74 - Children of herbicide treatment

Issue - State: closed - Opened by planteome-user almost 11 years ago
Labels: sourceforge, Plant Treatment

#73 - pesticide treatment and children

Issue - State: closed - Opened by planteome-user almost 11 years ago - 2 comments
Labels: sourceforge, Plant Treatment

#72 - peroxide treatment and children

Issue - State: closed - Opened by planteome-user almost 11 years ago
Labels: sourceforge, Plant Treatment

#71 - growth hormone treatment

Issue - State: closed - Opened by planteome-user almost 11 years ago - 3 comments
Labels: sourceforge, Plant Treatment

#70 - fungal elicitor treatment and children

Issue - State: closed - Opened by planteome-user almost 11 years ago
Labels: sourceforge, Plant Treatment

#69 - antibiotic treatment

Issue - State: closed - Opened by planteome-user almost 11 years ago - 1 comment
Labels: sourceforge, Plant Treatment, high priority

#68 - arbuscular mycorrhizal fungal inoculation

Issue - State: closed - Opened by planteome-user over 11 years ago - 3 comments
Labels: sourceforge, Plant Treatment, Request: New ontology term

#67 - rhizobial inoculation

Issue - State: closed - Opened by planteome-user over 11 years ago
Labels: sourceforge, Plant Treatment, Request: New ontology term

#66 - inorganic gas treatment

Issue - State: closed - Opened by planteome-user over 11 years ago
Labels: sourceforge, Plant Treatment, Request: New ontology term, high priority

#65 - in vitro growth medium (EO:0007266)

Issue - State: closed - Opened by planteome-user over 11 years ago - 4 comments
Labels: sourceforge, low priority, Plant Treatment, Request: New ontology term

#65 - in vitro growth medium (EO:0007266)

Issue - State: closed - Opened by planteome-user over 11 years ago - 4 comments
Labels: sourceforge, low priority, Plant Treatment, Request: New ontology term

#64 - chemical stress treatment (EO:0001036)

Issue - State: closed - Opened by planteome-user over 11 years ago
Labels: sourceforge, Plant Treatment, Request: New ontology term, high priority