Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / pipitone/qbatch issues and pull requests

#222 - Add github testing actions

Pull Request - State: open - Opened by gdevenyi over 1 year ago

#221 - List comprehension to drop lines starting with comment

Pull Request - State: open - Opened by gdevenyi over 1 year ago

#220 - remove unused vars

Pull Request - State: closed - Opened by joshunrau over 1 year ago - 1 comment

#219 - Ignore comment lines in job files

Issue - State: open - Opened by gdevenyi over 1 year ago

#218 - Add option to control SCRIPT_FOLDER

Issue - State: open - Opened by gdevenyi almost 3 years ago

#217 - Make --system local a bit more usable

Issue - State: open - Opened by gdevenyi almost 3 years ago

#216 - Add a date/timestamp to default job name if not provided

Issue - State: open - Opened by gdevenyi almost 3 years ago

#214 - Improve parallel call to avoid empty logfiles

Pull Request - State: closed - Opened by gdevenyi almost 3 years ago

#213 - Added --block option for blocking job submission

Pull Request - State: closed - Opened by Gab-D-G almost 3 years ago - 2 comments

#212 - Cannot set multiple default scheduler options via `QBATCH_OPTIONS`

Issue - State: closed - Opened by mjclarke94 about 3 years ago - 3 comments

#211 - Fix task_list referenced before assigned error

Pull Request - State: closed - Opened by cfhammill about 3 years ago - 1 comment

#210 - Fix some missing UTF-8 handling for text in script file

Pull Request - State: closed - Opened by gdevenyi about 4 years ago

#209 - Handle walltime units uniformly.

Issue - State: open - Opened by gdevenyi about 4 years ago - 1 comment

#208 - Non-ASCII characters in a filename

Issue - State: closed - Opened by Marina-Blmz about 4 years ago - 1 comment

#207 - Merge v2.2

Pull Request - State: closed - Opened by gdevenyi over 4 years ago - 2 comments

#206 - V2.2

Pull Request - State: closed - Opened by gdevenyi over 4 years ago

#205 - Implement container wrapper mode for docker/singularity

Pull Request - State: closed - Opened by gdevenyi over 4 years ago

#204 - [WIP] Container wrapper mode

Pull Request - State: closed - Opened by gdevenyi over 4 years ago

#203 - Add a CITATION file to make it clear how to cite this project

Issue - State: closed - Opened by pipitone over 4 years ago - 1 comment

#202 - Add --prefix-commands option

Issue - State: open - Opened by gdevenyi over 4 years ago

#201 - Way to use qbatch efficently on pbs torque ?

Issue - State: closed - Opened by rajiv03 almost 5 years ago - 2 comments

#200 - remove --compress and add --keep-order to parallel call

Issue - State: closed - Opened by gdevenyi almost 5 years ago - 1 comment

#198 - Adjust THREADS_PER_COMMAND for underpacked jobs

Issue - State: open - Opened by gdevenyi almost 5 years ago

#197 - Fix naming of logfile for non array slurm jobs

Pull Request - State: closed - Opened by gdevenyi almost 5 years ago

#196 - Older SLURM used --workdir instead of --chdir

Issue - State: closed - Opened by gdevenyi almost 5 years ago - 2 comments

#195 - Fix slurm_find_jobs returning a list when no jobs found

Pull Request - State: closed - Opened by gdevenyi about 5 years ago

#194 - slurm_find_jobs incorrect return on empty joblist

Issue - State: closed - Opened by gdevenyi about 5 years ago

#193 - Update more unicode python2 things

Pull Request - State: closed - Opened by gdevenyi about 5 years ago

#192 - Enable use of None for memory to account for slurm's 0 for whole-node memory

Pull Request - State: closed - Opened by gdevenyi about 5 years ago - 1 comment

#190 - Tweak chunk size to allow for unlimited size jobs

Pull Request - State: closed - Opened by gdevenyi about 5 years ago - 1 comment

#189 - Fix SLURM dependency embedding having an errant quote

Pull Request - State: closed - Opened by gdevenyi about 5 years ago

#188 - Cleanup missing command checks

Pull Request - State: closed - Opened by gdevenyi about 5 years ago

#187 - Explicitly embed the launch shell in PBS and SGE commands

Pull Request - State: closed - Opened by gdevenyi about 5 years ago

#184 - Update travis to xenial, remove python 3.3 support, add pypy

Pull Request - State: closed - Opened by gdevenyi over 5 years ago

#183 - Tell travis to only deploy once

Pull Request - State: closed - Opened by gdevenyi over 5 years ago

#181 - Add install depends, bump version number

Pull Request - State: closed - Opened by gdevenyi over 5 years ago - 1 comment

#180 - Checks presence of queue binary before submitting jobs

Pull Request - State: closed - Opened by gdevenyi over 5 years ago

#175 - Selectively name job logs for slurm based on individual or array

Pull Request - State: closed - Opened by gdevenyi almost 6 years ago

#174 - Embed full qbatch command into jobfile

Issue - State: open - Opened by gdevenyi almost 6 years ago

#173 - Embed threads per command in local runjob

Pull Request - State: closed - Opened by gdevenyi almost 6 years ago

#172 - Update slurm job dependency searching

Pull Request - State: closed - Opened by gdevenyi about 6 years ago

#171 - Futurize python

Pull Request - State: closed - Opened by gdevenyi about 6 years ago

#167 - Fix error checking, reformat errors

Pull Request - State: closed - Opened by gdevenyi about 6 years ago

#166 - Fix broken indentation from moving template string blocks into function

Pull Request - State: closed - Opened by gdevenyi about 6 years ago - 1 comment

#165 - Need option for unlimited chunk size

Issue - State: closed - Opened by gdevenyi about 6 years ago - 1 comment

#164 - Add single command support

Pull Request - State: closed - Opened by gdevenyi about 6 years ago

#163 - What should the pythonic interface return?

Issue - State: open - Opened by gdevenyi about 6 years ago

#161 - Fork of Minimum Effort Python API

Pull Request - State: closed - Opened by gdevenyi about 6 years ago

#156 - Add --parsable option

Issue - State: open - Opened by gdevenyi about 6 years ago - 5 comments

#155 - Implement gnu parallel joblog functionality

Issue - State: open - Opened by gdevenyi about 6 years ago

#154 - Implement --min-chunksize

Issue - State: open - Opened by gdevenyi about 6 years ago - 2 comments

#153 - Ask parallel to compress logfiles during run

Pull Request - State: closed - Opened by gdevenyi about 6 years ago

#152 - Need alternative way to specify no memory request

Issue - State: open - Opened by gdevenyi about 6 years ago - 1 comment

#151 - Properly capture return code on local run

Pull Request - State: closed - Opened by gdevenyi about 6 years ago

#145 - Add transformation of memory input parameters

Issue - State: open - Opened by gdevenyi over 6 years ago - 12 comments

#138 - Avoid issues with redefinition of ppj on SGE systems

Pull Request - State: closed - Opened by gdevenyi over 7 years ago

#136 - Add environment variable for QBATCH_OPTIONS

Pull Request - State: closed - Opened by gdevenyi over 7 years ago - 1 comment

#135 - Detect batch system with environment variables

Pull Request - State: closed - Opened by gdevenyi over 7 years ago

#134 - Update parallel to fix odd race condition in testing

Pull Request - State: closed - Opened by gdevenyi over 7 years ago - 1 comment

#132 - Adds --version argument (#122)

Pull Request - State: closed - Opened by pipitone almost 8 years ago

#129 - Fix string formatting for warning

Pull Request - State: closed - Opened by gdevenyi almost 8 years ago - 1 comment

#126 - Generalize scinet highmem to a pbs nodes spec line

Pull Request - State: closed - Opened by gdevenyi almost 8 years ago

#125 - Add bash check for parallel

Pull Request - State: closed - Opened by gdevenyi almost 8 years ago

#123 - Enable tagged line buffer for continuous logging

Pull Request - State: closed - Opened by gdevenyi almost 8 years ago - 1 comment

#120 - afterany dependency support

Issue - State: open - Opened by pipitone almost 8 years ago - 3 comments

#115 - Return two empty strings if qstat is blank

Pull Request - State: closed - Opened by gdevenyi about 8 years ago

#113 - Add long option for verbose

Pull Request - State: closed - Opened by gdevenyi about 8 years ago

#112 - Cleanup dependencies implementation, allow dependencies on JobID explicitly

Pull Request - State: closed - Opened by gdevenyi about 8 years ago - 2 comments

#111 - Expose shell as an option and ENV var

Pull Request - State: closed - Opened by gdevenyi about 8 years ago - 4 comments

#110 - Implement batch vs saved environment processing

Pull Request - State: closed - Opened by gdevenyi about 8 years ago

#109 - Add option to provide footer at end of jobs

Pull Request - State: closed - Opened by gdevenyi about 8 years ago

#107 - Improve dry run docs

Pull Request - State: closed - Opened by gdevenyi about 8 years ago

#103 - --block option to block until jobs have finished

Issue - State: closed - Opened by pipitone about 8 years ago - 10 comments

#101 - Verbose flag needed for single command chattiness

Pull Request - State: closed - Opened by pipitone about 8 years ago

#93 - Implement --header-file and --footer-file

Issue - State: closed - Opened by gdevenyi about 8 years ago - 4 comments

#86 - Check for output from qstat before parsing XML

Pull Request - State: closed - Opened by gdevenyi about 8 years ago

#83 - chunk_size and cores default to ppj

Pull Request - State: closed - Opened by pipitone about 8 years ago - 4 comments

#72 - Handle cases of number of commands less than chunks, and single commands

Pull Request - State: closed - Opened by gdevenyi about 8 years ago

#69 - Increase verbosity of dry run

Pull Request - State: closed - Opened by gdevenyi over 8 years ago

#66 - Really fix SGE walltime this time

Pull Request - State: closed - Opened by gdevenyi over 8 years ago

#55 - Attempt python3 compliance/tests

Pull Request - State: closed - Opened by gdevenyi over 8 years ago - 4 comments

#54 - Add preflight check for required programs

Pull Request - State: closed - Opened by gdevenyi over 8 years ago - 4 comments

#53 - Fix list expansion of SGE -hold_jid

Pull Request - State: closed - Opened by gdevenyi over 8 years ago - 1 comment

#52 - Fix doubled prefix for SGE walltime specification

Pull Request - State: closed - Opened by gdevenyi over 8 years ago

#44 - Enable verbose parallel

Pull Request - State: closed - Opened by gdevenyi over 8 years ago - 7 comments

#43 - Fix exit codes

Pull Request - State: closed - Opened by gdevenyi over 8 years ago

#23 - Generalize free-form options to allow for headers in job files

Pull Request - State: closed - Opened by gdevenyi over 8 years ago - 4 comments

#22 - Update documentation and help, more examples!

Pull Request - State: closed - Opened by gdevenyi over 8 years ago - 4 comments

#19 - Generate and run local jobfile using parallel, includes logging

Pull Request - State: closed - Opened by gdevenyi over 8 years ago - 11 comments

#18 - Add job name setting (for STDIN or override)

Pull Request - State: closed - Opened by gdevenyi over 8 years ago

#17 - Cast ppn as string so that this actually works

Pull Request - State: closed - Opened by gdevenyi over 8 years ago - 1 comment

#16 - Count jobs, if zero, exit with warning to stderr

Pull Request - State: closed - Opened by gdevenyi over 8 years ago - 4 comments

#15 - Fix missing error type import on script dir creation

Pull Request - State: closed - Opened by gdevenyi over 8 years ago

#14 - Fix chmod on job scripts

Pull Request - State: closed - Opened by gdevenyi over 8 years ago

#12 - Fix up some bugs in afterok

Pull Request - State: closed - Opened by gdevenyi over 8 years ago - 1 comment

#4 - Add option to submit to high memory nodes

Pull Request - State: closed - Opened by gdevenyi over 8 years ago - 2 comments