pipefunc/pipefunc issues and pull requests

#534 - BUG: Fix scope for `NestedPipeFunc`

Pull Request - State: closed - Opened by basnijholt about 1 month ago - 2 comments

#533 - MAINT: Extend `.gitignore`

Pull Request - State: closed - Opened by basnijholt about 1 month ago - 2 comments

#532 - ENH: Allow setting `NestedPipeFunc(..., function_name="customname")`

Pull Request - State: closed - Opened by basnijholt about 1 month ago - 2 comments

#531 - BUG: Fix `combine_mapspecs` in `NestedPipeFunc`

Pull Request - State: closed - Opened by basnijholt about 1 month ago - 2 comments

#530 - BUG: Set `internal_shape` for `NestedPipeFunc`

Pull Request - State: closed - Opened by basnijholt about 1 month ago - 1 comment

#529 - CI: Set `timeout-minutes: 10` in pytest jobs to prevent 6hr hanging jobs

Pull Request - State: closed - Opened by basnijholt about 1 month ago - 2 comments

#528 - BUG: Fix error message about using `map_async` with Slurm

Pull Request - State: closed - Opened by basnijholt about 1 month ago - 2 comments

#527 - Kill executor on task.cancel()

Pull Request - State: open - Opened by basnijholt about 1 month ago - 3 comments
Labels: invalid-title

#526 - ENH: Add `VariantPipelines.from_pipelines` classmethod

Pull Request - State: closed - Opened by basnijholt about 1 month ago - 2 comments

#525 - BUG: Fix case where bound and default are set for same parameter

Pull Request - State: closed - Opened by basnijholt about 1 month ago - 2 comments

#524 - DOC: Fix FAQ `VariantPipeline` example

Pull Request - State: closed - Opened by basnijholt about 1 month ago - 2 comments

#523 - ENH: Support Zarr v3

Pull Request - State: open - Opened by basnijholt about 1 month ago - 1 comment

#522 - ⬆️ Update zarr to v3

Pull Request - State: open - Opened by renovate[bot] about 1 month ago - 1 comment
Labels: dependencies, no-stale

#521 - MAINT: Pin `zarr>=2,<3`

Pull Request - State: closed - Opened by basnijholt about 1 month ago - 2 comments

#520 - DOC: Add example with non-unique variant names across `PipeFunc`s

Pull Request - State: closed - Opened by basnijholt about 1 month ago - 2 comments

#519 - Use Python 3.13 in CI where possible

Pull Request - State: closed - Opened by basnijholt about 1 month ago - 2 comments

#518 - ENH: Add `VariantPipeline` that can generate multiple `Pipeline` variants

Pull Request - State: closed - Opened by basnijholt about 1 month ago - 2 comments

#517 - Add pipeline variants

Issue - State: closed - Opened by basnijholt about 1 month ago - 1 comment

#516 - ⬆️ Update ghcr.io/astral-sh/uv Docker tag to v0.5.16

Pull Request - State: closed - Opened by renovate[bot] about 1 month ago - 2 comments
Labels: dependencies, no-stale

#515 - ENH: Use `__pipefunc_hash__` of function to determine the cache key

Pull Request - State: closed - Opened by basnijholt about 1 month ago - 4 comments

#514 - ⬆️ Update ghcr.io/astral-sh/uv Docker tag to v0.5.15

Pull Request - State: closed - Opened by renovate[bot] about 1 month ago - 2 comments
Labels: dependencies, no-stale

#513 - 1.0 features

Issue - State: open - Opened by basnijholt about 1 month ago

#512 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 month ago - 2 comments

#511 - ⬆️ Update ghcr.io/astral-sh/uv Docker tag to v0.5.14

Pull Request - State: closed - Opened by renovate[bot] about 1 month ago - 2 comments
Labels: dependencies, no-stale

#510 - Stateful callable output caching

Issue - State: closed - Opened by egorchakov about 1 month ago - 4 comments
Labels: enhancement

#509 - Update Discord invite link README.md

Pull Request - State: closed - Opened by basnijholt about 1 month ago - 2 comments

#508 - ⬆️ Update ghcr.io/astral-sh/uv Docker tag to v0.5.13

Pull Request - State: closed - Opened by renovate[bot] about 2 months ago - 2 comments
Labels: dependencies, no-stale

#507 - ⬆️ Update ghcr.io/astral-sh/uv Docker tag to v0.5.12

Pull Request - State: closed - Opened by renovate[bot] about 2 months ago - 2 comments
Labels: dependencies, no-stale

#506 - DOC: Update number of required dependencies in README.md

Pull Request - State: closed - Opened by basnijholt about 2 months ago - 2 comments

#505 - ENH: Add auto-chunksize heuristic

Pull Request - State: closed - Opened by basnijholt about 2 months ago - 4 comments

#504 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 2 months ago - 2 comments

#503 - DOC: Autoformat Markdown in FAQ and README

Pull Request - State: closed - Opened by basnijholt about 2 months ago - 2 comments

#502 - DOC: Add comparison section with Hamilton

Pull Request - State: open - Opened by basnijholt about 2 months ago - 2 comments

#501 - DOC: Add comparison with Snakemake

Pull Request - State: closed - Opened by basnijholt about 2 months ago - 2 comments

#500 - CI: Revert `pull_request_target:`

Pull Request - State: closed - Opened by basnijholt about 2 months ago - 2 comments

#499 - TST: Explicitly set reason in `skipif`

Pull Request - State: closed - Opened by basnijholt about 2 months ago - 1 comment

#498 - TST: Skip shared memory test in CI on nogil Python (3.13t)

Pull Request - State: closed - Opened by basnijholt about 2 months ago - 2 comments

#497 - ENH: Allow providing an int to `chunksizes`

Pull Request - State: closed - Opened by basnijholt about 2 months ago - 7 comments

#496 - Test CI

Pull Request - State: closed - Opened by basnijholt about 2 months ago - 2 comments

#495 - CI: Revert `pull_request_target:` for CodSpeed

Pull Request - State: closed - Opened by basnijholt about 2 months ago - 2 comments

#494 - CI: Use `pull_request_target:` to trigger CI on fork

Pull Request - State: closed - Opened by basnijholt about 2 months ago

#493 - ENH: Add `chunksizes` argument to `Pipeline.map` and `Pipeline.map_async`

Pull Request - State: closed - Opened by LennartGevers about 2 months ago - 3 comments

#492 - DOC: Mention HPC vs cloud based running

Pull Request - State: closed - Opened by basnijholt about 2 months ago - 1 comment

#491 - DOC: How is this different from Dask, AiiDA, Luigi, Prefect, Kedro, Apache Airflow, etc.?

Pull Request - State: closed - Opened by basnijholt about 2 months ago - 2 comments

#490 - DOC: Add Discord shield

Pull Request - State: closed - Opened by basnijholt about 2 months ago - 2 comments

#489 - ENH: Add function source caching

Pull Request - State: open - Opened by basnijholt about 2 months ago - 2 comments

#488 - Implement progress bar per 'subpipeline' or category for better viz

Issue - State: open - Opened by basnijholt about 2 months ago
Labels: enhancement

#487 - NestedPipeFunction in graph show wrong datatype

Issue - State: closed - Opened by basnijholt about 2 months ago
Labels: bug

#486 - ENH: Add `size_per_learner` for `SlurmExecutor`

Pull Request - State: closed - Opened by basnijholt about 2 months ago - 2 comments

#485 - Allow reusing data from old map run, to e.g., increase resolution

Issue - State: open - Opened by basnijholt about 2 months ago
Labels: enhancement

#484 - Proposal: Reduce Pipeline.map's IPC overhead with chunking

Issue - State: closed - Opened by LennartGevers about 2 months ago - 5 comments

#483 - ⬆️ Update astral-sh/setup-uv action to v5

Pull Request - State: closed - Opened by renovate[bot] about 2 months ago - 2 comments
Labels: dependencies, github_actions, no-stale

#482 - ⬆️ Update ghcr.io/astral-sh/uv Docker tag to v0.5.11

Pull Request - State: closed - Opened by renovate[bot] about 2 months ago - 2 comments
Labels: dependencies, no-stale

#481 - ENH: Add `helpers.get_attribute_factory`

Pull Request - State: closed - Opened by basnijholt about 2 months ago - 2 comments

#480 - Add helpers.getattr

Issue - State: closed - Opened by basnijholt about 2 months ago

#479 - DOC: Set Python version to 3.13 in README `opennb` example

Pull Request - State: closed - Opened by marcellaholm about 2 months ago - 2 comments

#478 - DOC: Fix header level of "Dynamic Output Shapes and `internal_shapes`"

Pull Request - State: closed - Opened by basnijholt about 2 months ago - 2 comments

#477 - DOC: Small formatting fix in example in doc-string

Pull Request - State: closed - Opened by basnijholt about 2 months ago - 1 comment

#476 - ENH: Add `Pipeline._repr_mimebundle_`

Pull Request - State: closed - Opened by basnijholt about 2 months ago - 2 comments

#475 - ENH: Allow printing rich-formatted table with `pipeline.info()`

Pull Request - State: closed - Opened by basnijholt about 2 months ago - 2 comments

#474 - DOC: Update documentation about dynamic `internal_shapes`

Pull Request - State: closed - Opened by basnijholt about 2 months ago - 2 comments

#473 - ENH: Add a `.devcontainer` for VS Code based on `uv`

Pull Request - State: closed - Opened by basnijholt about 2 months ago - 2 comments

#472 - Make results numpy array optional

Issue - State: open - Opened by basnijholt about 2 months ago
Labels: enhancement

#471 - ENH: Enable `show_progress` when using dynamic shapes

Pull Request - State: closed - Opened by basnijholt about 2 months ago - 2 comments

#470 - DOC: Add workaround for multiple returns with different sizes

Pull Request - State: closed - Opened by basnijholt about 2 months ago - 2 comments

#469 - BUG: Ensure to resolve shapes for all arrays in `_update_array` and fix `internal_shape` calculation

Pull Request - State: closed - Opened by basnijholt about 2 months ago - 2 comments

#468 - DOC: Enable `jupyterlite-sphinx`

Pull Request - State: open - Opened by basnijholt about 2 months ago - 2 comments

#467 - BUG: Fix case where there is no size

Pull Request - State: closed - Opened by basnijholt about 2 months ago - 2 comments

#466 - BUG: Fix case where first dim is "?"

Pull Request - State: closed - Opened by basnijholt about 2 months ago - 2 comments

#465 - BUG: Fix autogenerated `mapspec` issue with mismatching dims check

Pull Request - State: closed - Opened by basnijholt about 2 months ago - 2 comments

#464 - DOC: Add `opennb` tip

Pull Request - State: closed - Opened by basnijholt about 2 months ago - 2 comments

#463 - ENH: Automatically set `internal_shape=("?", ...)`

Pull Request - State: closed - Opened by basnijholt about 2 months ago - 2 comments

#462 - ENH: Add `Pipeline.info()` that returns input and output info

Pull Request - State: closed - Opened by basnijholt about 2 months ago - 2 comments

#461 - ENH: Allow `pipeline.root_args(None)` (default) that returns all inputs

Pull Request - State: closed - Opened by basnijholt about 2 months ago - 2 comments

#460 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 2 months ago - 2 comments

#459 - TST: Use `pytest-timeout` plugin to prevent handing tests

Pull Request - State: closed - Opened by basnijholt 2 months ago - 2 comments

#458 - BUG: Only use the cache when `cache=True` instead of always in `pipeline.map`

Pull Request - State: closed - Opened by basnijholt 2 months ago - 2 comments

#457 - ENH: Add `pipefunc.helpers.collect_kwargs` helper function

Pull Request - State: closed - Opened by basnijholt 2 months ago - 2 comments

#456 - Aggregating function outputs into a `dict`?

Issue - State: closed - Opened by egorchakov 2 months ago - 5 comments

#455 - BUG: Fix `internal_shapes` coming from `PipeFunc` constructor and `cleanup=False`

Pull Request - State: closed - Opened by basnijholt 2 months ago - 2 comments

#454 - BUG: Fix case with multiple output then iterate over single axis

Pull Request - State: closed - Opened by basnijholt 2 months ago - 2 comments

#453 - MAINT: Small formatting changes and tiny refactors (from #448)

Pull Request - State: closed - Opened by basnijholt 2 months ago - 2 comments

#452 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 2 months ago - 2 comments

#451 - Convert a pipeline to GP regressor

Issue - State: open - Opened by basnijholt 2 months ago
Labels: enhancement

#450 - Explore Array API

Issue - State: open - Opened by basnijholt 2 months ago
Labels: enhancement

#449 - Add .ruff_cache to .gitignore

Pull Request - State: closed - Opened by basnijholt 2 months ago - 2 comments

#448 - ENH: Automatically set `internal_shape`

Pull Request - State: closed - Opened by basnijholt 2 months ago - 2 comments

#447 - Add different routes in graph, so depending on some condition (e.g., result) it choses a different node route (`filter`)

Issue - State: open - Opened by basnijholt 2 months ago
Labels: enhancement

#447 - Add different routes in graph, so depending on some condition (e.g., result) it choses a different node route (`filter`)

Issue - State: open - Opened by basnijholt 2 months ago
Labels: enhancement

GitHub / pipefunc/pipefunc issues and pull requests