pints-team/pints issues and pull requests

#1045 - Generalised HMC with neural networks

Issue - State: closed - Opened by ben18785 almost 5 years ago - 2 comments
Labels: new method

#1044 - Coupled HMC

Issue - State: closed - Opened by ben18785 almost 5 years ago
Labels: new method

#1041 - Multi-objective optimisation?

Issue - State: closed - Opened by MichaelClerx almost 5 years ago - 2 comments
Labels: science!

#1040 - Adversarial neural network MCMC

Issue - State: closed - Opened by ben18785 almost 5 years ago - 2 comments
Labels: new method

#1039 - Add one-electron transfer electrochemistry toy problem

Issue - State: closed - Opened by rccreswell almost 5 years ago - 12 comments
Labels: feature

#1009 - Look at hyperparameter optimisation

Issue - State: closed - Opened by MichaelClerx about 5 years ago - 2 comments
Labels: science!

#1008 - Look at CasADi tool for optimisation & auto diff

Issue - State: closed - Opened by MichaelClerx about 5 years ago
Labels: science!

#1002 - Example showing interface with Julia

Issue - State: closed - Opened by ben18785 over 5 years ago - 4 comments
Labels: documentation

#1001 - Implement NUTS with multinomial sampling and generalised U-Turn criterion

Issue - State: closed - Opened by ben18785 over 5 years ago
Labels: new method

#999 - Implement adaptive covariance method targeting multiple modes

Issue - State: closed - Opened by ben18785 over 5 years ago - 1 comment
Labels: new method

#994 - Make MALA allow repeated ask()

Pull Request - State: open - Opened by MichaelClerx over 5 years ago - 5 comments

#964 - Investigate wormhole Hamiltonian Monte Carlo

Issue - State: closed - Opened by ben18785 over 5 years ago
Labels: science!

#958 - Add mass matrix as hyperparameter to HMC

Issue - State: closed - Opened by ben18785 over 5 years ago
Labels: feature

#956 - Implement continuously tempered HMC

Issue - State: closed - Opened by ben18785 over 5 years ago
Labels: new method

#955 - Investigate HMC coupled with neural nets

Issue - State: closed - Opened by ben18785 over 5 years ago
Labels: science!

#954 - Implement HMC without detailed balance

Issue - State: closed - Opened by ben18785 over 5 years ago
Labels: new method

#952 - Implement magnetic Hamiltonian Monte Carlo

Issue - State: closed - Opened by ben18785 over 5 years ago
Labels: new method

#951 - Implement hug and hop algorithm

Issue - State: closed - Opened by ben18785 over 5 years ago
Labels: new method

#950 - Investigate high-order Langevin dynamics

Issue - State: closed - Opened by ben18785 over 5 years ago
Labels: science!

#949 - Investigate nested transition path sampling

Issue - State: closed - Opened by ben18785 over 5 years ago
Labels: science!

#948 - Implement irreversible Metropolis, MALA and others

Issue - State: closed - Opened by ben18785 over 5 years ago
Labels: new method

#947 - Investigate perturbed underdamped Langevin dynamics

Issue - State: closed - Opened by ben18785 over 5 years ago
Labels: new method

#946 - Implement mix and match HMC

Issue - State: closed - Opened by ben18785 over 5 years ago
Labels: new method

#945 - Implement SOL-HMC algorithm

Issue - State: closed - Opened by ben18785 over 5 years ago - 2 comments
Labels: new method

#937 - Add `max_evaluations` stopping criteria

Issue - State: closed - Opened by MichaelClerx over 5 years ago - 1 comment
Labels: feature, priority, good first issue

#936 - Have a look at trust-region local optimisers

Issue - State: closed - Opened by MichaelClerx over 5 years ago
Labels: new method

#934 - Add Levenberg-Marquardt optimiser (requires sensitivities)

Issue - State: closed - Opened by MichaelClerx over 5 years ago - 1 comment
Labels: new method

#932 - Investigate optimiser stopping criteria

Issue - State: closed - Opened by MichaelClerx over 5 years ago
Labels: feature

#931 - Add differential evolution optimiser

Issue - State: closed - Opened by MichaelClerx over 5 years ago
Labels: new method

#929 - Do some kind of profiling / performance testing of the problem/model bits

Issue - State: closed - Opened by MichaelClerx over 5 years ago
Labels: code and design

#917 - Sampler roadmap / overview

Issue - State: closed - Opened by MichaelClerx over 5 years ago - 4 comments
Labels: priority

#916 - Bayesian optimisation

Issue - State: closed - Opened by MichaelClerx over 5 years ago
Labels: question, new method

#915 - Add IGO-CMA Optimiser

Issue - State: closed - Opened by MichaelClerx over 5 years ago - 3 comments
Labels: new method

#909 - Tentative optimiser classification

Issue - State: closed - Opened by MichaelClerx over 5 years ago

#900 - Integrate Slice Sampling: Generalised Elliptical.

Pull Request - State: open - Opened by lorcandelaney over 5 years ago - 2 comments

#896 - Integrate Slice Sampling: Covariance Matching MCMC

Pull Request - State: open - Opened by lorcandelaney over 5 years ago - 3 comments
Labels: new method

#895 - Integrate Slice Sampling: Hyperrectangles-based Methods.

Pull Request - State: open - Opened by lorcandelaney over 5 years ago - 2 comments
Labels: new method

#890 - Stochastic toy problems for ABC

Issue - State: closed - Opened by ben18785 over 5 years ago - 3 comments
Labels: feature

#889 - Exact and approximate simulation methods for stochastic models

Issue - State: closed - Opened by ben18785 over 5 years ago - 6 comments
Labels: science!

#888 - Create Wasserstein metric for ABC discrepancy measures

Issue - State: closed - Opened by ben18785 over 5 years ago - 4 comments
Labels: feature

#887 - Include lazy ABC

Issue - State: closed - Opened by ben18785 over 5 years ago
Labels: new method

#885 - Look at likelihood-free nested sampling

Issue - State: closed - Opened by MichaelClerx over 5 years ago
Labels: new method

#883 - Add modified Nelder-Mead optimiser

Issue - State: closed - Opened by MichaelClerx over 5 years ago - 1 comment
Labels: new method

#868 - Look at saCeSS global optimiser

Issue - State: closed - Opened by MichaelClerx over 5 years ago - 1 comment
Labels: feature

#856 - Efficient Amortised Bayesian Inference for Hierarchical and Nonlinear Dynamical Systems

Issue - State: closed - Opened by MichaelClerx over 5 years ago - 3 comments
Labels: science!

#855 - Visualising (unnormalised) posterior functions

Issue - State: closed - Opened by MichaelClerx over 5 years ago
Labels: feature

#852 - Link to salib for sensitivity analysis

Issue - State: closed - Opened by MichaelClerx over 5 years ago - 2 comments
Labels: feature

#850 - Look at Bayes Non parametric learning

Issue - State: closed - Opened by MichaelClerx over 5 years ago - 8 comments
Labels: feature, science!

#834 - Have a look at "Conditional Robust Calibration (CRC)"

Issue - State: closed - Opened by MichaelClerx over 5 years ago
Labels: feature

#830 - Update Pints website text

Issue - State: closed - Opened by MichaelClerx over 5 years ago - 3 comments
Labels: priority, documentation

#809 - Investigate Anglican

Issue - State: closed - Opened by ben18785 almost 6 years ago - 1 comment
Labels: science!

#768 - Add repo with example using Pints with Chaste

Issue - State: closed - Opened by MichaelClerx almost 6 years ago - 1 comment
Labels: documentation

#749 - Add SMC sampler

Pull Request - State: closed - Opened by MichaelClerx almost 6 years ago - 8 comments

#733 - Look into ARIMA noise models

Issue - State: closed - Opened by MichaelClerx almost 6 years ago
Labels: feature

#730 - Make HMC/MALA compatible with population MCMC

Issue - State: closed - Opened by ben18785 almost 6 years ago - 1 comment
Labels: code and design

#713 - Kalman filter log-likelihood

Pull Request - State: open - Opened by MichaelClerx almost 6 years ago - 4 comments

#697 - Add function to allow a lower divergent iteration threshold in HMC

Issue - State: closed - Opened by ben18785 almost 6 years ago
Labels: feature

#693 - Add more difficult eggbox example

Issue - State: closed - Opened by ben18785 almost 6 years ago
Labels: feature

#684 - Add more optimisers

Issue - State: closed - Opened by MichaelClerx almost 6 years ago - 9 comments
Labels: new method

#682 - Add note saying we won't have discrete parameters in PINTS

Issue - State: open - Opened by ben18785 almost 6 years ago - 4 comments
Labels: documentation

#612 - Toy models call() accept more than one input vector

Issue - State: closed - Opened by chonlei about 6 years ago - 1 comment
Labels: bug

#589 - Add plots based on seaborn?

Issue - State: closed - Opened by MichaelClerx about 6 years ago - 4 comments
Labels: feature, infrastructure, student-project

#579 - Check out travis windows support

Issue - State: closed - Opened by MichaelClerx about 6 years ago - 8 comments
Labels: testing, infrastructure

#575 - Add plots using `corner.py`

Issue - State: open - Opened by MichaelClerx about 6 years ago - 2 comments
Labels: feature

#557 - Master-Develop-Issues branch structure

Issue - State: closed - Opened by MichaelClerx about 6 years ago - 18 comments
Labels: infrastructure

#551 - Rename `_dimension` variables to `_n_parameters`

Issue - State: closed - Opened by MichaelClerx about 6 years ago
Labels: code and design, priority, good first issue

#533 - rhat_all_params fails when ony 1 chain is given

Issue - State: open - Opened by MichaelClerx over 6 years ago - 1 comment
Labels: bug

#487 - Add option to allow tempering rather than mixing for SMC and population MCMC

Issue - State: open - Opened by ben18785 over 6 years ago - 3 comments
Labels: new method

#469 - State-space sampler evaluation (Pints 2.0)

Issue - State: open - Opened by ben18785 over 6 years ago
Labels: science!, new method

#458 - Rewrite argparser for test running script

Issue - State: closed - Opened by MichaelClerx over 6 years ago - 1 comment
Labels: code and design, priority, infrastructure

#433 - Kalman filter log-likelihood

Issue - State: open - Opened by martinjrobins over 6 years ago
Labels: new method

#332 - Add example notebook of wrapping C++ (with PyBoost?)

Issue - State: closed - Opened by MichaelClerx almost 7 years ago - 2 comments
Labels: documentation

#307 - Allow separate parameters or blocks of them to use different samplers

Issue - State: open - Opened by ben18785 almost 7 years ago - 2 comments
Labels: new method

#298 - implement gradients/sensitivities for toy problems

Issue - State: closed - Opened by martinjrobins almost 7 years ago - 26 comments
Labels: feature, code and design, priority

#280 - Options for SMC samplers

Issue - State: open - Opened by ben18785 almost 7 years ago - 1 comment
Labels: new method

#260 - Have a look at Daisy

Issue - State: closed - Opened by MichaelClerx almost 7 years ago - 2 comments
Labels: science!

#229 - Comparison matrix of models versus optimisers versus inference methods

Issue - State: open - Opened by martinjrobins almost 7 years ago - 7 comments

#165 - Investigate rPython and/or reticulate R packages

Issue - State: closed - Opened by ben18785 about 7 years ago - 4 comments
Labels: science!

#152 - Add diffusive nested sampling

Issue - State: open - Opened by ben18785 about 7 years ago
Labels: new method

#120 - Add sequential MC (SMC)

Issue - State: closed - Opened by MichaelClerx about 7 years ago - 8 comments
Labels: priority, new method

#96 - Add ABC routine

Issue - State: closed - Opened by MichaelClerx about 7 years ago - 6 comments
Labels: new method

#82 - Compare PINTS samplers with Stan for a range of models

Issue - State: open - Opened by ben18785 about 7 years ago - 12 comments
Labels: science!, student-project

#57 - Have a look at non-reversible samplers

Issue - State: open - Opened by MichaelClerx over 7 years ago - 2 comments
Labels: science!

#45 - Add Model wrapper that uses Gaussian processes to evaluate

Issue - State: open - Opened by MichaelClerx over 7 years ago - 8 comments
Labels: new method

#22 - Gradient Matching (fitting the slopes rather than absolute values)

Issue - State: closed - Opened by MichaelClerx over 7 years ago - 4 comments
Labels: science!

#21 - Add brute-force samplers (for uniform priors)

Issue - State: closed - Opened by MichaelClerx over 7 years ago - 10 comments
Labels: new method

GitHub / pints-team/pints issues and pull requests